ID

44987

Beschrijving

Principal Investigator: Judith H. Greenberg, PhD, National Institute of General Medical Sciences, National Institutes of Health, Bethesda, MD, USA MeSH: Chromosome Disorders https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000269 As part of an effort to correlate molecular copy number variation determinations with state of the art karyotype analyses, 716 samples derived from 697 individuals from the Chromosomal Aberrations and Inherited Disorders collections of the NIGMS Human Genetic Cell Repository were genotyped and analyzed for CNV determination by the Microarray Center at the Coriell Institute for Medical Research. Karyotyping is performed on all cell cultures in the Repository with reported chromosome abnormalities. The samples chosen for genotyping in this study are intended to represent a diverse set of copy number variants, but the selection was also weighted to over-sample commonly manifested types of aberrations. When available, the ISCN description of the sample based on G-banding and FISH analysis is included in the phenotypic data. Karyotypes for these cells can be viewed in the online Repository catalog (http://ccr.coriell.org/Sections/Collections/NIGMS/?SsId=8).

Link

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000269

Trefwoorden

  1. 20-06-22 20-06-22 - Dr. Christian Niklas
  2. 12-10-22 12-10-22 - Adrian Schulz
Houder van rechten

Judith H. Greenberg, PhD

Geüploaded op

20 juni 2022

DOI

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Licentie

Creative Commons BY 4.0

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dbGaP phs000269 Genotyping NIGMS Chromosomal Aberration and Inherited Disorder Samples

Demographic data and diagnosis of participants with chromosomal aberrations.

pht001498
Beschrijving

pht001498

Sample ID
Beschrijving

SAMPID

Datatype

string

Alias
UMLS CUI [1,1]
C1299222
Gender of participant
Beschrijving

SEX

Datatype

text

Alias
UMLS CUI [1,1]
C0079399
Age at time of sample collection
Beschrijving

AGE

Datatype

text

Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [1,2]
C0011008
UMLS CUI [1,3]
C0870078
Age units
Beschrijving

AGE_UNIT

Datatype

text

Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [1,2]
C1519795
NIGMS source collection for sample [chromosomal aberrations, inherited disorders]
Beschrijving

COLLECTION

Datatype

string

Alias
UMLS CUI [1,1]
C0449416
UMLS CUI [1,2]
C0200345
UMLS CUI [1,3]
C0008625
UMLS CUI [1,4]
C0019247
Name of diagnosed disease or category of aberration
Beschrijving

DESCRIPTION

Datatype

string

Alias
UMLS CUI [1,1]
C0027365
UMLS CUI [1,2]
C0012634
UMLS CUI [2,1]
C0683312
UMLS CUI [2,2]
C0008625
International System for Human Cytogenetic Nomenclature description; the majority do not contain the array results
Beschrijving

ISCN

Datatype

string

Alias
UMLS CUI [1,1]
C4745320

Similar models

Demographic data and diagnosis of participants with chromosomal aberrations.

Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht001498
SAMPID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
Item
Gender of participant
text
C0079399 (UMLS CUI [1,1])
Code List
Gender of participant
CL Item
Male (1)
CL Item
Female (2)
CL Item
Ambiguous Gender (3)
AGE
Item
Age at time of sample collection
text
C0001779 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0870078 (UMLS CUI [1,3])
Item
Age units
text
C0001779 (UMLS CUI [1,1])
C1519795 (UMLS CUI [1,2])
Code List
Age units
CL Item
Days (DA)
C0439228 (UMLS CUI [1,1])
CL Item
Fetal Weeks (FW)
C0521457 (UMLS CUI [1,1])
C0439230 (UMLS CUI [1,2])
CL Item
Months (MO)
C0439231 (UMLS CUI [1,1])
CL Item
Weeks (WK)
C0439230 (UMLS CUI [1,1])
CL Item
Years (YR)
C0439234 (UMLS CUI [1,1])
COLLECTION
Item
NIGMS source collection for sample [chromosomal aberrations, inherited disorders]
string
C0449416 (UMLS CUI [1,1])
C0200345 (UMLS CUI [1,2])
C0008625 (UMLS CUI [1,3])
C0019247 (UMLS CUI [1,4])
DESCRIPTION
Item
Name of diagnosed disease or category of aberration
string
C0027365 (UMLS CUI [1,1])
C0012634 (UMLS CUI [1,2])
C0683312 (UMLS CUI [2,1])
C0008625 (UMLS CUI [2,2])
ISCN
Item
International System for Human Cytogenetic Nomenclature description; the majority do not contain the array results
string
C4745320 (UMLS CUI [1,1])

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