ID

44987

Description

Principal Investigator: Judith H. Greenberg, PhD, National Institute of General Medical Sciences, National Institutes of Health, Bethesda, MD, USA MeSH: Chromosome Disorders https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000269 As part of an effort to correlate molecular copy number variation determinations with state of the art karyotype analyses, 716 samples derived from 697 individuals from the Chromosomal Aberrations and Inherited Disorders collections of the NIGMS Human Genetic Cell Repository were genotyped and analyzed for CNV determination by the Microarray Center at the Coriell Institute for Medical Research. Karyotyping is performed on all cell cultures in the Repository with reported chromosome abnormalities. The samples chosen for genotyping in this study are intended to represent a diverse set of copy number variants, but the selection was also weighted to over-sample commonly manifested types of aberrations. When available, the ISCN description of the sample based on G-banding and FISH analysis is included in the phenotypic data. Karyotypes for these cells can be viewed in the online Repository catalog (http://ccr.coriell.org/Sections/Collections/NIGMS/?SsId=8).

Link

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000269

Keywords

  1. 6/20/22 6/20/22 - Dr. Christian Niklas
  2. 10/12/22 10/12/22 - Adrian Schulz
Copyright Holder

Judith H. Greenberg, PhD

Uploaded on

June 20, 2022

DOI

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License

Creative Commons BY 4.0

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dbGaP phs000269 Genotyping NIGMS Chromosomal Aberration and Inherited Disorder Samples

Demographic data and diagnosis of participants with chromosomal aberrations.

pht001498
Description

pht001498

Sample ID
Description

SAMPID

Data type

string

Alias
UMLS CUI [1,1]
C1299222
Gender of participant
Description

SEX

Data type

text

Alias
UMLS CUI [1,1]
C0079399
Age at time of sample collection
Description

AGE

Data type

text

Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [1,2]
C0011008
UMLS CUI [1,3]
C0870078
Age units
Description

AGE_UNIT

Data type

text

Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [1,2]
C1519795
NIGMS source collection for sample [chromosomal aberrations, inherited disorders]
Description

COLLECTION

Data type

string

Alias
UMLS CUI [1,1]
C0449416
UMLS CUI [1,2]
C0200345
UMLS CUI [1,3]
C0008625
UMLS CUI [1,4]
C0019247
Name of diagnosed disease or category of aberration
Description

DESCRIPTION

Data type

string

Alias
UMLS CUI [1,1]
C0027365
UMLS CUI [1,2]
C0012634
UMLS CUI [2,1]
C0683312
UMLS CUI [2,2]
C0008625
International System for Human Cytogenetic Nomenclature description; the majority do not contain the array results
Description

ISCN

Data type

string

Alias
UMLS CUI [1,1]
C4745320

Similar models

Demographic data and diagnosis of participants with chromosomal aberrations.

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht001498
SAMPID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
Item
Gender of participant
text
C0079399 (UMLS CUI [1,1])
Code List
Gender of participant
CL Item
Male (1)
CL Item
Female (2)
CL Item
Ambiguous Gender (3)
AGE
Item
Age at time of sample collection
text
C0001779 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0870078 (UMLS CUI [1,3])
Item
Age units
text
C0001779 (UMLS CUI [1,1])
C1519795 (UMLS CUI [1,2])
Code List
Age units
CL Item
Days (DA)
C0439228 (UMLS CUI [1,1])
CL Item
Fetal Weeks (FW)
C0521457 (UMLS CUI [1,1])
C0439230 (UMLS CUI [1,2])
CL Item
Months (MO)
C0439231 (UMLS CUI [1,1])
CL Item
Weeks (WK)
C0439230 (UMLS CUI [1,1])
CL Item
Years (YR)
C0439234 (UMLS CUI [1,1])
COLLECTION
Item
NIGMS source collection for sample [chromosomal aberrations, inherited disorders]
string
C0449416 (UMLS CUI [1,1])
C0200345 (UMLS CUI [1,2])
C0008625 (UMLS CUI [1,3])
C0019247 (UMLS CUI [1,4])
DESCRIPTION
Item
Name of diagnosed disease or category of aberration
string
C0027365 (UMLS CUI [1,1])
C0012634 (UMLS CUI [1,2])
C0683312 (UMLS CUI [2,1])
C0008625 (UMLS CUI [2,2])
ISCN
Item
International System for Human Cytogenetic Nomenclature description; the majority do not contain the array results
string
C4745320 (UMLS CUI [1,1])

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