0 Ratings
ID

44974

Description

Principal Investigator: Gonçalo R. Abecasis, University of Michigan School of Public Health, Ann Arbor, MI, USA MeSH: Psoriasis,Psoriatic Arthritis https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000019 The goal of this collaborative study is to combine the resources and expertise of three groups with long-standing studies of psoriasis genetics in order to identify new genetic susceptibility factors for psoriasis, a common inflammatory skin disease that affects over 4 million Americans. *Consent groups and participant set* - General research use (GRU): 1677 (950 cases, 692 controls, 35 others) - Autoimmune disease (AD): 1198 (449 cases, 734 controls, 15 others)

Link

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000019

Keywords

Versions (4)
  1. 5/12/22 5/12/22 - Martin Dugas
  2. 5/20/22 5/20/22 - Dr. Christian Niklas
  3. 6/3/22 6/3/22 - Dr. Christian Niklas
  4. 10/12/22 10/12/22 - Adrian Schulz
Copyright Holder

Gonçalo R. Abecasis, University of Michigan School of Public Health, Ann Arbor, MI, USA

Uploaded on

June 3, 2022

DOI

To request one please log in.

License

Creative Commons BY 4.0
Model comments :

You can comment on the data model here. Via the speech bubbles at the itemgroups and items you can add comments to those specificially.

Back to model comments
Itemgroup comments for :

Item comments for :

  • Newest
  • Oldest
  • Popular
  • Newest
    • Newest
    • Oldest
    • Popular

    No comments

    In order to download data models you must be logged in. Please log in or register for free.

    44967_dbGaP phs000019 Collaborative Association Study of Psoriasis

    English

    Diagnostic interview and genetic analysis of subjects affected with psoriasis and psoriatic arthritis

    5 forms  
    pht000063
    Description

    pht000063

    Age for cases
    Description

    AGE

    Data type

    integer

    Measurement units
    • Years
    Alias
    UMLS CUI [1,1]
    C3274647 (True Case Status)
    UMLS CUI [1,2]
    C0001779 (Age)
    SNOMED
    424144002
    LOINC
    LP28815-6
    Years
    Age at onset
    Description

    AGE_ONSET

    Data type

    string

    Measurement units
    • Years
    Alias
    UMLS CUI [1,1]
    C0206132 (Age of Onset)
    Years
    Severity of erythema
    Description

    ERYTHEMA

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C1319166 (Symptom severity (finding))
    SNOMED
    162465004
    UMLS CUI [1,2]
    C0041834 (Erythema)
    SNOMED
    444827008
    LOINC
    LA7433-1
    Family history of psoriasis
    Description

    FAMILY_PSORIASIS

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0455439 (FH: Psoriasis)
    SNOMED
    160408009
    Sex for cases
    Description

    GENDER

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C3274647 (True Case Status)
    UMLS CUI [1,2]
    C0079399 (Gender)
    SNOMED
    263495000
    LOINC
    LP61312-2
    Evidence of psoriasis in head, scalp, ears or neck
    Description

    HEAD_INVOLVEMENT

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0332120 (Evidence of (contextual qualifier))
    SNOMED
    18669006
    UMLS CUI [1,2]
    C0033860 (Psoriasis)
    SNOMED
    9014002
    LOINC
    LA15165-6
    UMLS CUI [1,3]
    C0018670 (Head)
    SNOMED
    69536005
    LOINC
    LP7281-1
    UMLS CUI [2,1]
    C0332120 (Evidence of (contextual qualifier))
    SNOMED
    18669006
    UMLS CUI [2,2]
    C0033860 (Psoriasis)
    SNOMED
    9014002
    LOINC
    LA15165-6
    UMLS CUI [2,3]
    C0036270 (Scalp structure)
    SNOMED
    41695006
    LOINC
    LP30549-7
    UMLS CUI [3,1]
    C0332120 (Evidence of (contextual qualifier))
    SNOMED
    18669006
    UMLS CUI [3,2]
    C0033860 (Psoriasis)
    SNOMED
    9014002
    LOINC
    LA15165-6
    UMLS CUI [3,3]
    C0013443 (Ear structure)
    SNOMED
    117590005
    LOINC
    LP7188-8
    UMLS CUI [4,1]
    C0332120 (Evidence of (contextual qualifier))
    SNOMED
    18669006
    UMLS CUI [4,2]
    C0033860 (Psoriasis)
    SNOMED
    9014002
    LOINC
    LA15165-6
    UMLS CUI [4,3]
    C0027530 (Neck)
    SNOMED
    45048000
    LOINC
    LP7440-3
    Patient has IBD or Crohn's disease
    Description

    IBDORCROHNS

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0010346 (Crohn Disease)
    SNOMED
    34000006
    UMLS CUI [2,1]
    C0021390 (Inflammatory Bowel Diseases)
    SNOMED
    24526004
    Severity of induration
    Description

    INDURATION

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C1319166 (Symptom severity (finding))
    SNOMED
    162465004
    UMLS CUI [1,2]
    C0332534 (Induration)
    SNOMED
    45147008
    Evidence of psoriasis in legs, knees or feet
    Description

    LOWER_LIMB_INVOLVEMENT

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0332120 (Evidence of (contextual qualifier))
    SNOMED
    18669006
    UMLS CUI [1,2]
    C0033860 (Psoriasis)
    SNOMED
    9014002
    LOINC
    LA15165-6
    UMLS CUI [1,3]
    C1140621 (Leg)
    SNOMED
    30021000
    LOINC
    LP30098-5
    UMLS CUI [2,1]
    C0332120 (Evidence of (contextual qualifier))
    SNOMED
    18669006
    UMLS CUI [2,2]
    C0033860 (Psoriasis)
    SNOMED
    9014002
    LOINC
    LA15165-6
    UMLS CUI [2,3]
    C0022742 (Knee)
    SNOMED
    304679005
    LOINC
    LP7381-9
    UMLS CUI [3,1]
    C0332120 (Evidence of (contextual qualifier))
    SNOMED
    18669006
    UMLS CUI [3,2]
    C0033860 (Psoriasis)
    SNOMED
    9014002
    LOINC
    LA15165-6
    UMLS CUI [3,3]
    C0016504 (Foot)
    SNOMED
    56459004
    LOINC
    LP7245-6
    Nails affected by psoriasis
    Description

    NAIL_INVOLVEMENT

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0406322 (Psoriasis of nail)
    SNOMED
    238604005
    Patient has other autoimmune disease
    Description

    OTHERAUTOIMMUNE

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0004364 (Autoimmune Diseases)
    SNOMED
    85828009
    UMLS CUI [1,2]
    C0205394 (Other)
    SNOMED
    74964007
    LOINC
    LP21049-9
    Percentage of body surface affected by psoriasis
    Description

    PERCENT_BODY_SURFACE_AT_EXAM

    Data type

    integer

    Measurement units
    • %
    Alias
    UMLS CUI [1,1]
    C0445175 (Percent of body surface)
    SNOMED
    264905007
    UMLS CUI [1,2]
    C0033860 (Psoriasis)
    SNOMED
    9014002
    LOINC
    LA15165-6
    UMLS CUI [1,3]
    C0392760 (Affecting)
    SNOMED
    247591002
    %
    Psoriatic arthritis
    Description

    PSORIATIC_ARTHRITIS

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0003872 (Arthritis, Psoriatic)
    SNOMED
    156370009
    Severity of scaling
    Description

    SCALE

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C1319166 (Symptom severity (finding))
    SNOMED
    162465004
    UMLS CUI [1,2]
    C0237849 (Peeling of skin)
    SNOMED
    14411002
    Affection status for cases
    Description

    STATUS

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C3274647 (True Case Status)
    Identifier within Collaborative Association Study of Psoriasis for cases
    Description

    STUDY_ID

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C3274647 (True Case Status)
    UMLS CUI [1,2]
    C2348585 (Clinical Trial Subject Unique Identifier)
    Evidence of psoriasis in the trunk area
    Description

    TRUNK_INVOLVEMENT

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0332120 (Evidence of (contextual qualifier))
    SNOMED
    18669006
    UMLS CUI [1,2]
    C0033860 (Psoriasis)
    SNOMED
    9014002
    LOINC
    LA15165-6
    UMLS CUI [1,3]
    C0460005 (Trunk structure)
    SNOMED
    22943007
    LOINC
    LP7660-6
    Evidence of psoriasis in arms, elbows or hands
    Description

    UPPER_LIMB_INVOLVEMENT

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0332120 (Evidence of (contextual qualifier))
    SNOMED
    18669006
    UMLS CUI [1,2]
    C0033860 (Psoriasis)
    SNOMED
    9014002
    LOINC
    LA15165-6
    UMLS CUI [1,3]
    C1140618 (Upper Extremity)
    SNOMED
    53120007
    LOINC
    LP207499-7
    UMLS CUI [2,1]
    C0332120 (Evidence of (contextual qualifier))
    SNOMED
    18669006
    UMLS CUI [2,2]
    C0033860 (Psoriasis)
    SNOMED
    9014002
    LOINC
    LA15165-6
    UMLS CUI [2,3]
    C0013769 (Elbow)
    SNOMED
    127949000
    LOINC
    LP7196-1
    UMLS CUI [3,1]
    C0332120 (Evidence of (contextual qualifier))
    SNOMED
    18669006
    UMLS CUI [3,2]
    C0033860 (Psoriasis)
    SNOMED
    9014002
    LOINC
    LA15165-6
    UMLS CUI [3,3]
    C0018563 (Hand)
    LOINC
    LP7279-5
    Back to the top of the page

    Similar models

    Diagnostic interview and genetic analysis of subjects affected with psoriasis and psoriatic arthritis

    5 forms
    Name
    Type
    Description | Question | Decode (Coded Value)
    Data type
    Alias
    Item Group
    pht000063
    AGE
    Item
    Age for cases
    integer
    C3274647 (UMLS CUI [1,1])
    C0001779 (UMLS CUI [1,2])
    AGE_ONSET
    Item
    Age at onset
    string
    C0206132 (UMLS CUI [1,1])
    Item
    Severity of erythema
    string
    C1319166 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    ERYTHEMA
    Code List
    Severity of erythema
    CL Item
    Not applicable (NA)
    C1272460 (UMLS CUI [1,1])
    CL Item
    The University of Michigan severity scale 0 (UM-0)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 1 (UM-1)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 2 (UM-2)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 3 (UM-3)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 4 (UM-4)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 5 (UM-5)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 6 (UM-6)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 0 (UU-0)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 1 (UU-1)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 2 (UU-2)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 3 (UU-3)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 4 (UU-4)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 5 (UU-5)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The Washington University severity scale - mild (WU-Mild)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The Washington University severity scale - moderate (WU-Moderate)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    CL Item
    The Washington University severity scale - severe (WU-Severe)
    C0457451 (UMLS CUI [1,1])
    C0041834 (UMLS CUI [1,2])
    FAMILY_PSORIASIS
    Item
    Family history of psoriasis
    string
    C0455439 (UMLS CUI [1,1])
    Item
    Sex for cases
    string
    C3274647 (UMLS CUI [1,1])
    C0079399 (UMLS CUI [1,2])
    GENDER
    Code List
    Sex for cases
    CL Item
    Female (F)
    C0086287 (UMLS CUI [1,1])
    CL Item
    Male (M)
    C0086582 (UMLS CUI [1,1])
    CL Item
    Not applicable (NA)
    C1272460 (UMLS CUI [1,1])
    HEAD_INVOLVEMENT
    Item
    Evidence of psoriasis in head, scalp, ears or neck
    string
    C0332120 (UMLS CUI [1,1])
    C0033860 (UMLS CUI [1,2])
    C0018670 (UMLS CUI [1,3])
    C0332120 (UMLS CUI [2,1])
    C0033860 (UMLS CUI [2,2])
    C0036270 (UMLS CUI [2,3])
    C0332120 (UMLS CUI [3,1])
    C0033860 (UMLS CUI [3,2])
    C0013443 (UMLS CUI [3,3])
    C0332120 (UMLS CUI [4,1])
    C0033860 (UMLS CUI [4,2])
    C0027530 (UMLS CUI [4,3])
    IBDORCROHNS
    Item
    Patient has IBD or Crohn's disease
    string
    C0010346 (UMLS CUI [1,1])
    C0021390 (UMLS CUI [2,1])
    Item
    Severity of induration
    string
    C1319166 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    INDURATION
    Code List
    Severity of induration
    CL Item
    Not applicable (NA)
    C1272460 (UMLS CUI [1,1])
    CL Item
    The University of Michigan severity scale 0 (UM-0)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 1 (UM-1)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 2 (UM-2)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 3 (UM-3)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 4 (UM-4)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 5 (UM-5)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 6 (UM-6)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 0 (UU-0)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 1 (UU-1)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 2 (UU-2)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 3 (UU-3)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 4 (UU-4)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 5 (UU-5)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The Washington University severity scale - mild (WU-Mild)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The Washington University severity scale - moderate (WU-Moderate)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    CL Item
    The Washington University severity scale - severe, pending (WU-Severe)
    C0457451 (UMLS CUI [1,1])
    C0332534 (UMLS CUI [1,2])
    LOWER_LIMB_INVOLVEMENT
    Item
    Evidence of psoriasis in legs, knees or feet
    string
    C0332120 (UMLS CUI [1,1])
    C0033860 (UMLS CUI [1,2])
    C1140621 (UMLS CUI [1,3])
    C0332120 (UMLS CUI [2,1])
    C0033860 (UMLS CUI [2,2])
    C0022742 (UMLS CUI [2,3])
    C0332120 (UMLS CUI [3,1])
    C0033860 (UMLS CUI [3,2])
    C0016504 (UMLS CUI [3,3])
    NAIL_INVOLVEMENT
    Item
    Nails affected by psoriasis
    string
    C0406322 (UMLS CUI [1,1])
    OTHERAUTOIMMUNE
    Item
    Patient has other autoimmune disease
    string
    C0004364 (UMLS CUI [1,1])
    C0205394 (UMLS CUI [1,2])
    PERCENT_BODY_SURFACE_AT_EXAM
    Item
    Percentage of body surface affected by psoriasis
    integer
    C0445175 (UMLS CUI [1,1])
    C0033860 (UMLS CUI [1,2])
    C0392760 (UMLS CUI [1,3])
    PSORIATIC_ARTHRITIS
    Item
    Psoriatic arthritis
    string
    C0003872 (UMLS CUI [1,1])
    Item
    Severity of scaling
    string
    C1319166 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    SCALE
    Code List
    Severity of scaling
    CL Item
    Not applicable (NA)
    C1272460 (UMLS CUI [1,1])
    CL Item
    The University of Michigan severity scale 0 (UM-0)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 1 (UM-1)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 2 (UM-2)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 3 (UM-3)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 4 (UM-4)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 5 (UM-5)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The University of Michigan severity scale 6 (UM-6)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 0 (UU-0)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 1 (UU-1)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 2 (UU-2)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 3 (UU-3)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 4 (UU-4)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The University of Utah severity scale 5 (UU-5)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The Washington University severity scale - mild (WU-Mild)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The Washington University severity scale - moderate (WU-Moderate)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    CL Item
    The Washington University severity scale - severe (WU-Severe)
    C0457451 (UMLS CUI [1,1])
    C0237849 (UMLS CUI [1,2])
    STATUS
    Item
    Affection status for cases
    string
    C3274647 (UMLS CUI [1,1])
    STUDY_ID
    Item
    Identifier within Collaborative Association Study of Psoriasis for cases
    string
    C3274647 (UMLS CUI [1,1])
    C2348585 (UMLS CUI [1,2])
    TRUNK_INVOLVEMENT
    Item
    Evidence of psoriasis in the trunk area
    string
    C0332120 (UMLS CUI [1,1])
    C0033860 (UMLS CUI [1,2])
    C0460005 (UMLS CUI [1,3])
    UPPER_LIMB_INVOLVEMENT
    Item
    Evidence of psoriasis in arms, elbows or hands
    string
    C0332120 (UMLS CUI [1,1])
    C0033860 (UMLS CUI [1,2])
    C1140618 (UMLS CUI [1,3])
    C0332120 (UMLS CUI [2,1])
    C0033860 (UMLS CUI [2,2])
    C0013769 (UMLS CUI [2,3])
    C0332120 (UMLS CUI [3,1])
    C0033860 (UMLS CUI [3,2])
    C0018563 (UMLS CUI [3,3])
    Back to the top of the page 

    Help

    Do you need help on how to use the search function? Please watch the corresponding tutorial video for more details and learn how to use the search function most efficiently.

    Watch Tutorial