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Information:
Fel:
ID
40239
Beskrivning
The ISBER Biospecimen Science Working Group has developed a SPREC that identifies and records the main pre-analytical factors that may have impact on the integrity of sampled clinical fluids and solid biospecimens and their simple derivatives during collection, processing and storage. SPREC comprises seven elements for both fluid and solid samples, defining the sample and primary container type, periods of cold and warm ischemia, and subsequent handling steps including speed and temperature of centrifugation and final storage temperature. This form contains information about solid samples. More detailed information can be found at https://www.isber.org/page/SPREC
Länk
https://www.isber.org/page/SPREC
Nyckelord
Versioner (3)
- 2019-10-08 2019-10-08 -
- 2020-03-24 2020-03-24 -
- 2020-03-24 2020-03-24 -
Rättsinnehavare
ISBER
Uppladdad den
24 mars 2020
DOI
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Licens
Creative Commons BY-NC 4.0
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SPREC V2.0
Similar models
Solid samples
- StudyEvent: ODM
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
CL Item
Fresh cells from non blood specimen type (e.g. biopsy) (CEN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Cells from non blood specimen type (e.g. dissociated tissue), viable (CLN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Cells from fine needle aspirate (FNA)
(Comment:en)
CL Item
Hair (HAR)
(Comment:en)
CL Item
Cells from laser capture microdissected tissue (LCM)
(Comment:en)
CL Item
Cells from non blood specimen type (e.g. dissociated tissue), non viable (PEN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Placenta (PLC)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Solid tissue (TIS)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Disrupted tissue, non-viable (TCM)
(Comment:en)
CL Item
Other ZZZ (Other ZZZ)
(Comment:en)
CL Item
Fine needle aspirate (FNA)
(Comment:en)
CL Item
Autopsy < 6 h post-mortem (A06)
CL Item
Autopsy 6-12 h post-mortem (A12)
CL Item
Autopsy 12-24 h post-mortem (A24)
CL Item
Autopsy 24-48 h post-mortem (A48)
CL Item
Autopsy 48-72 h post-mortem (A72)
CL Item
Biopsy in culture media (BCM)
CL Item
Biopsy (BPS)
CL Item
Biopsy in normal saline or phosphate buffered saline (BSL)
CL Item
Biopsy in tissue low temperature transport media (BTM)
CL Item
Punction (PUN)
(Comment:en)
CL Item
Surgical excision in culture media (SCM)
(Comment:en)
CL Item
Surgical excision (SRG)
(Comment:en)
CL Item
Surgical excision in normal saline or phosphate buffered saline (SSL)
(Comment:en)
CL Item
Surgical excision in tissue low temperature transport media (STM)
(Comment:en)
CL Item
Surgical excision in vacuum container (VAC)
(Comment:en)
CL Item
Swab (SWB)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Other (ZZZ)
(Comment:en)
CL Item
< 2 min (A)
CL Item
2 to 10 min (B)
CL Item
10 to 20 min (C)
CL Item
20 to 30 min (D)
CL Item
30 to 60 min (E)
CL Item
>60 min (F)
CL Item
Unknown (X)
CL Item
Not applicable (e.g. biopsy) (N)
CL Item
Other (Z)
CL Item
< 2 min (A)
CL Item
2 to 10 min (B)
CL Item
10 to 20 min (C)
CL Item
20 to 30 min (D)
CL Item
30 to 60 min (E)
CL Item
>60 min (F)
CL Item
Unknown (X)
CL Item
Not applicable (e.g. biopsy) (N)
CL Item
Other (Z)
Item
Fixation / stabilization type
text
C1293130 (UMLS CUI [1])
C0185023 (UMLS CUI [2])
C0185023 (UMLS CUI [2])
CL Item
Non-aldehyde with acetic acid (ACA)
(Comment:en)
CL Item
Aldehyde-based (ALD)
(Comment:en)
CL Item
Allprotect ® tissue reagent (ALL)
(Comment:en)
CL Item
Alcohol-based (ETH)
(Comment:en)
CL Item
Non-buffered formalin (FOR)
(Comment:en)
CL Item
Heat stabilization (HST)
(Comment:en)
CL Item
Snap freezing (SNP)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Non-aldehyde based without acetic acid (NAA)
(Comment:en)
CL Item
Neutral buffered formalin (NBF)
(Comment:en)
CL Item
Optimum cutting temperature medium (OCT)
(Comment:en)
CL Item
PAXgene® tissue (PXT)
(Comment:en)
CL Item
RNA Later® (RNL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Unknown (XXX)
(Comment:en)
CL Item
Other (ZZZ)
(Comment:en)
CL Item
<15 min (A)
CL Item
15 min to 1 h (B)
CL Item
1 to 4 h (C)
CL Item
4 to 8 h (D)
CL Item
8 to 24 h (E)
CL Item
24 to 48 h (F)
CL Item
48 to 72 h (G)
CL Item
Not applicable (N)
CL Item
Unknown (X)
CL Item
Other (Z)
CL Item
PP tube 0.5- to 2-mL** (-85) to (-60) °C (A)
CL Item
PP tube 0.5- to 2-mL (-35) to (-18) °C (B)
CL Item
Cryotube 1- to 2-mL Liquid nitrogen*** (C)
CL Item
Cryotube 1- to 2-mL (-85) to (-60) °C (D)
CL Item
Cryotube 1- to 2-mL Programmable freezing to <-135 °C (E)
CL Item
Plastic cryostraw Liquid nitrogen (F)
CL Item
Straw (-85) to (-60) °C (G)
CL Item
Cryotube 1- to 2-mL LN*** after temporary (-85) to (-60) °C (N)
CL Item
Unknown (X)
CL Item
Other (Z)
CL Item
PP tube 0.5- to 2-mL <-135 ° C (V)
CL Item
Straw (-35) to (-18) °C (H)
CL Item
Straw Programmable freezing to <-135 °C (I)
CL Item
PP tube ≥ 5 mL (-85) to (-60) °C (J)
CL Item
PP tube ≥ 5 mL (-35) to (-18) °C (K)
CL Item
Microplate (-85) to (-60) °C (L)
CL Item
Microplate (-35) to (-18) °C (M)
CL Item
Straw LN*** after temporary (-85) to (-60) °C (O)
CL Item
Paraffin block RT or 2 to 10°C (P)
CL Item
Bag LN*** (Q)
CL Item
Dry technology medium RT (R)
CL Item
PP tube 40 to 500L (-85) to (-60) °C (S)
CL Item
PP tube 40 to 500L (-35) to (-18) °C (T)
CL Item
PP tube 40- to 500-L <-135 ° C (W)
CL Item
Original primary container (-35)-(-18) °C or (-85)-(-60) °C (Y)