ID

38289

Beschreibung

The ISBER Biospecimen Science Working Group has developed a SPREC that identifies and records the main pre-analytical factors that may have impact on the integrity of sampled clinical fluids and solid biospecimens and their simple derivatives during collection, processing and storage. SPREC comprises seven elements for both fluid and solid samples, defining the sample and primary container type, periods of cold and warm ischemia, and subsequent handling steps including speed and temperature of centrifugation and final storage temperature. This form contains information about fluid samples. More detailed information can be found at https://www.isber.org/page/SPREC

Link

https://www.isber.org/page/SPREC

Stichworte

Versionen (3)
  1. 08.10.19 08.10.19 -
  2. 24.03.20 24.03.20 -
  3. 24.03.20 24.03.20 -
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ISBER

Hochgeladen am

8. Oktober 2019

DOI

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Creative Commons BY-NC 3.0
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SPREC V2.0

Englisch

Fluid samples

1 Formulare  
  1. StudyEvent: ODM
    1. Fluid samples
Type of sample
Beschreibung

Type of sample

Alias
UMLS CUI-1
C2347029
Type of sample
Beschreibung

Type of sample

Datentyp

text

Alias
UMLS CUI [1,1]
C2347029
UMLS CUI [1,2]
C1704353
Type of primary container
Beschreibung

Type of primary container

Datentyp

text

Alias
UMLS CUI [1,1]
C0180098
UMLS CUI [1,2]
C0332307
Pre-centrifugation (delay between collection and processing)
Beschreibung

*RT, room temperature: 18 to 28 °C

Datentyp

text

Alias
UMLS CUI [1,1]
C2985752
UMLS CUI [1,2]
C1516698
UMLS CUI [1,3]
C1709694
Centrifugation
Beschreibung

Centrifugation

Datentyp

text

Alias
UMLS CUI [1]
C0007703
Second Centrifugation
Beschreibung

Second Centrifugation

Datentyp

text

Alias
UMLS CUI [1]
C0007703
Post-centrifugation delay
Beschreibung

Post-centrifugation delay

Datentyp

text

Alias
UMLS CUI [1,1]
C0032756
UMLS CUI [1,2]
C0007703
UMLS CUI [1,3]
C0205421
Long-term storage
Beschreibung

**PP, polypropylene ***LN, liquid nitrogen, referring to either vapor- or liquid-phase (this information being documented in the biobank’s SOPs)

Datentyp

text

Alias
UMLS CUI [1,1]
C0443252
UMLS CUI [1,2]
C1698986
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Ähnliche Modelle

Fluid samples

1 Formulare
  1. StudyEvent: ODM
    1. Fluid samples
Name
Typ
Description | Question | Decode (Coded Value)
Datentyp
Alias
Item Group
Type of sample
C2347029 (UMLS CUI-1)
Item
Type of sample
text
C2347029 (UMLS CUI [1,1])
C1704353 (UMLS CUI [1,2])
Type of sample
Code List
Type of sample
CL Item
Ascites fluid (ASC)
(Comment:en)
CL Item
Amniotic fluid (AMN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Bronchoalveolar lavage (BAL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Blood (whole) (BLD)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Bone marrow aspirate (BMA)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Breast milk (BMK)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Buccal cells (BUC)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Unficolled buffy coat, non-viable (BFF)
(Comment:en)
CL Item
Ficoll mononuclear cells, viable (CEL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Fresh cells from non-blood specimen type (CEN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Cells from non blood specimen type(e.g. ascites, amniotic), viable (CLN)
(Comment:en)
CL Item
Cord blood (CRD)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Cerebrospinal fluid (CSF)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Dried whole blood (e.g. Guthrie cards) (DWB)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Nasal washing (NAS)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Ficoll mononuclear cells, non viable (PEL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Cells from non blood specimen type (e.g. ascites, amniotic), non-viable (PEN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Pleural fluid (PFL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Plasma, single spun (PL1)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Plasma, double spun (PL2)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Red blood cells (RBC)
(Comment:en)
CL Item
Saliva (SAL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Semen (SEM)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Serum (SER)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Sputum (SPT)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Stool (STL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Synovial fluid (SYN)
(Comment:en)
CL Item
Tears (TER)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
24 h urine (U24)
(Comment:en)
CL Item
Urine, random (“spot”) (URN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Urine, first morning (URM)
(Comment:en)
CL Item
Urine, timed (URT)
(Comment:en)
CL Item
Other (ZZZ)
(Comment:en)
CL Item
Unficolled buffy coat, viable (BUF)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
Item
Type of primary container
text
C0180098 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
Type of primary container
Code List
Type of primary container
CL Item
Acid citrate dextrose  (ACD)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Additives (ADD)
(Comment:en)
CL Item
Serum tube without clot activator (CAT)
(Comment:en)
CL Item
Citrate phosphate dextrose (CPD)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Cell Preparation Tube® (CPT)
(Comment:en)
CL Item
EDTA and gel (EDG)
(Comment:en)
CL Item
Lithium heparin (HEP)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Hirudin (HIR)
(Comment:en)
CL Item
Lithium heparin and gel  (LHG)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Oragene collection container or equivalent  (ORG)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
PAXgene® blood RNA+  (PAX)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Potassium EDTA  (PED)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Polyethylene tube sterile  (PET)
(Comment:en)
CL Item
S8820 protease inhibitor tablets or equivalent  (PI1)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Protease inhibitors  (PIX)
(Comment:en)
CL Item
Polypropylene tube sterile  (PPS)
(Comment:en)
CL Item
PAXgene® blood DNA  (PXD)
(Comment:en)
CL Item
PAXgene® bone marrow RNA  (PXR)
(Comment:en)
CL Item
Sodium citrate  (SCI)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Sodium EDTA  (SED)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Sodium heparin  (SHP)
(Comment:en)
CL Item
Sodium fluoride/potassium oxalate  (SPO)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Serum separator tube with clot activator  (SST)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Tempus® tube  (TEM)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Trace elements tube  (TRC)
(Comment:en)
CL Item
Unknown  (XXX)
(Comment:en)
CL Item
Other  (ZZZ)
(Comment:en)
Item
Pre-centrifugation (delay between collection and processing)
text
C2985752 (UMLS CUI [1,1])
C1516698 (UMLS CUI [1,2])
C1709694 (UMLS CUI [1,3])
Pre-centrifugation (delay between collection and processing)
Code List
Pre-centrifugation (delay between collection and processing)
CL Item
RT* <2 h  (A)
CL Item
2 to 10 °C <2 h  (B)
CL Item
RT 2-4 h  (C)
CL Item
2 to 10 °C 2-4 h  (D)
CL Item
RT 4-8 h  (E)
CL Item
2 to 10 °C 4-8 h  (F)
CL Item
RT 8-12 h  (G)
CL Item
2 to 10 °C 8-12 h  (H)
CL Item
RT 12-24 h  (I)
CL Item
2 to 10 °C 12-24 h  (J)
CL Item
RT 24-48 h  (K)
CL Item
2 to 10 °C 24-48 h  (L)
CL Item
RT >48 h  (M)
CL Item
2 to 10 °C >48 h  (N)
CL Item
35 to 38 °C <2 h  (O)
CL Item
Unknown  (X)
CL Item
Other  (Z)
Item
Centrifugation
text
C0007703 (UMLS CUI [1])
Centrifugation
Code List
Centrifugation
CL Item
RT 10 to 15 min <3000 g no braking  (A)
CL Item
RT 10 to 15 min <3000 g with braking  (B)
CL Item
2 to 10 °C 10 to 15 min <3000 g no braking  (C)
CL Item
2 to 10 °C 10 to 15 min <3000 g with braking  (D)
CL Item
RT 10 to 15 min 3000 g to 6000 g with braking  (E)
CL Item
2 to 10 °C 10 to 15 min 3000 g to 6000 g with braking  (F)
CL Item
RT 10 to 15 min 6000 g to 10000 g with braking  (G)
CL Item
2 to 10 °C 10 to 15 min 6000 g to 10000 g with braking  (H)
CL Item
RT 10 to 15 min >10000 g with braking  (I)
CL Item
2 to 10 °C 10 to 15 min >10000 g with braking  (J)
CL Item
RT 30 min <1000 g no braking  (M)
CL Item
No centrifugation  (N)
CL Item
Unknown  (X)
CL Item
Other  (Z)
Item
Second Centrifugation
text
C0007703 (UMLS CUI [1])
Centrifugation
Code List
Second Centrifugation
CL Item
RT 10 to 15 min <3000 g no braking  (A)
CL Item
RT 10 to 15 min <3000 g with braking  (B)
CL Item
2 to 10 °C 10 to 15 min <3000 g no braking  (C)
CL Item
2 to 10 °C 10 to 15 min <3000 g with braking  (D)
CL Item
RT 10 to 15 min 3000 g to 6000 g with braking  (E)
CL Item
2 to 10 °C 10 to 15 min 3000 g to 6000 g with braking  (F)
CL Item
RT 10 to 15 min 6000 g to 10000 g with braking  (G)
CL Item
2 to 10 °C 10 to 15 min 6000 g to 10000 g with braking  (H)
CL Item
RT 10 to 15 min >10000 g with braking  (I)
CL Item
2 to 10 °C 10 to 15 min >10000 g with braking  (J)
CL Item
RT 30 min <1000 g no braking  (M)
CL Item
No centrifugation  (N)
CL Item
Unknown  (X)
CL Item
Other  (Z)
Item
Post-centrifugation delay
text
C0032756 (UMLS CUI [1,1])
C0007703 (UMLS CUI [1,2])
C0205421 (UMLS CUI [1,3])
Post-centrifugation delay
Code List
Post-centrifugation delay
CL Item
<1 h 2 to 10 °C  (A)
CL Item
<1 h RT  (B)
CL Item
1 to 2 h 2 to 10 °C  (C)
CL Item
1 to 2 h RT  (D)
CL Item
2 to 8 h 2 to 10 °C  (E)
CL Item
2 to 8 h RT  (F)
CL Item
8 to 24 h 2 to 10 °C  (G)
CL Item
8 to 24 h RT  (H)
CL Item
>24 h 2 to 10 °C  (I)
CL Item
>24 h RT  (J)
CL Item
Not applicable  (N)
CL Item
Unknown  (X)
CL Item
Other  (Z)
Item
Long-term storage
text
C0443252 (UMLS CUI [1,1])
C1698986 (UMLS CUI [1,2])
Long-term storage
Code List
Long-term storage
CL Item
PP tube 0.5- to 2-mL** (-85) to (-60) ° C  (A)
CL Item
PP tube 0.5- to 2-mL (-35) to (-18) °C  (B)
CL Item
PP tube 0.5- to 2-mL <-135 °C  (V)
CL Item
Cryotube 1- to 2-mL LN***  (C)
CL Item
Cryotube 1- to 2-mL (-85) to (-60) °C  (D)
CL Item
Cryotube 1- to 2-mL Programmable freezing to <-135 °C  (E)
CL Item
Plastic cryo straw LN***  (F)
CL Item
Straw (-85) to (-60) °C  (G)
CL Item
Straw (-35) to (-18) °C  (H)
CL Item
Straw Programmable freezing to <-135 °C  (I)
CL Item
PP tube ≥ 5 mL (-85) to (-60) °C  (J)
CL Item
PP tube ≥ 5 mL (-35) to (-18) °C  (K)
CL Item
Microplate (-85) to (-60) °C  (L)
CL Item
Microplate (-35) to (-18) °C  (M)
CL Item
Cryotube 1- to 2-mL LN*** after temporary (-85) to (-60) °C  (N)
CL Item
Plastic cryo straw LN*** after temporary (-85) to (-60) °C  (O)
CL Item
Paraffin block RT or 2 to 10 °C  (P)
CL Item
Bag LN***  (Q)
CL Item
Dry technology medium RT  (R)
CL Item
PP tube 40- to 500-L (-85) to (-60) °C  (S)
CL Item
PP tube 40- to 500-L (-35) to (-18) °C  (T)
CL Item
PP tube 40- to 500-L <-135 ° C  (W)
CL Item
Original primary container (-35) to (-18) °C or (-85) to (-60) °C  (Y)
CL Item
Unknown  (X)
CL Item
Other  (Z)
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