ID

28732

Description

HICDEP stands for HIV Cohorts Data Exchange Protocol. The HIV Cohorts Data Exchange Protocol (HICDEP) is a protocol that allows for simple sharing of data from HIV cohorts by providing a standard format for datasets. It is used by several major HIV Cohort Collaborations such as CASCADE, COHERE, EuroSIDA, PENTA, EPPICC ART-CC and D:A:D. Its first version was presented at the 7th International Workshop on HIV Observational Databases in March 29–30, 2003, Fiuggi, Italy, and a summary was published in Antiviral Therapy. The specification currently consists of 27 tables in a relational structure which cover most medical aspects of HIV patient histories used in clinical research, including pediatric aspects. Subform Descriptions: -tblCEP - Clinical Events and Procedures: holds type and date of adverse events including serious non-AIDS conditions -tblART- Antiretroviral treatment: holds type of antiretroviral drug, start and stop dates and reason for stopping -tblBAS - Basic clinical, background and demographic information: holds basic information such as demographics, basic clinical information, date of AIDS diagnosis, death and drop-out information -tblDELIVERY_CHILD - Delivery information related to the child(ren): This table holds information about a delivery specific to a child. Mother-specific data is kept in tblDELIVERY_MUM. -tblDELIVERY_MUM - Delivery information related to the mother: This table contains information about the delivery specific to the mother. Child-specific information is recorded in tblDELIVERY_CHILD instead. -tblDIS - Opportunistic infections: holds type and date of CDC-C diseases. -tblLAB - Laboratory values: holds type, date, value and unit of laboratory tests -tblLAB_BP - Laboratory values - Blood pressure: holds date, diastolic and systolic values and unit of blood pressure measurements. -tblLAB_CD4 - Laboratory values: holds date and value of CD4 measurements. -tblLAB_RNA - Laboratory values: holds date, value, detection limit and type of viral assay. -tblLAB_RES - Resistance testing: holds background information on the resistance test, laboratory, library, kit, software and type of test -tblLAB_RES_LVL_1 - Nucleotide sequences (PRO, RT, GP41, GP120): holds nucleoside sequence for the PRO and RT sequences. No entry is made if the test was a phenotype test. -tblLAB_RES_LVL_2 - Mutations: holds mutations and positions of PRO and RT sequences. -tblLAB_RES_LVL_3 - Resistance test result: holds resistance result in relation to antiretroviral drug. tblLAB_VIRO - Laboratory values - viro-/serology: holds test results for viro-/serological tests (hepatitis etc.) -tblLTFU - Death and drop-out: holds data in death and drop-out -tblMED - Other medication: holds type, start and stop dates for other medication/treatments. -tblNEWBORN - Newborn: holds information related to newborns -tblNEWBORN_ABNORM - Abnormalities: Abnormalities in newborns are recorded here, one abnormality per row. The absence of a record is to be interpreted as "unknown whether the abnormality existed" since most cohorts only record positive events. -tblOVERLAP - Cross-cohort identification: holds information on the patient's participation in other cohorts -tblPREG - Pregnancy: holds general pregnancy-related information -tblPREG_OBS - Obstetrical problems during pregnancy: This table describes problems during a pregnancy. Abnormalities in newborns are recorded in tblNEWBORN_ABNORM instead. -tblPREG_OUT - Pregnancy outcome: This table describes outcomes of pregnancies described in tblPREG. -tblREFILL - Prescription refill data: holds drug, refill date and supply of prescriptions -tblSAMPLES - Blood Samples: This table contains information on the storage of blood, urine and other samples stored in a laboratory. -tblVIS - Basic follow-up/visit related data: holds visit related information such as weight, wasting, smoking, occupational status etc.

Keywords

  1. 1/29/18 1/29/18 -
  2. 1/29/18 1/29/18 -
Copyright Holder

HICDEP

Uploaded on

January 29, 2018

DOI

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License

Creative Commons BY-NC 3.0

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HICDEP

Resistance testing (tblLAB_RES)

Resistance testing
Description

Resistance testing

Alias
UMLS CUI-1
C1138797
UMLS CUI-2
C0151521
UMLS CUI-3
C0039593
UMLS CUI-4
C0019682
Patient ID
Description

PATIENT

Data type

text

Alias
UMLS CUI [1]
C2348585
An arbitrary value identifying a resistance test result
Description

TEST_ID

Data type

text

Alias
UMLS CUI [1]
C1138797
Date of the actual sample taken (NOT the test date)
Description

SAMPLE_D

Data type

date

Alias
UMLS CUI [1]
C1302413
Date and time when the sequencing was performed
Description

SEQ_DT

Data type

date

Alias
UMLS CUI [1,1]
C1138797
UMLS CUI [1,2]
C0011008
Name of laboratory where the test was performed
Description

LAB

Data type

text

Alias
UMLS CUI [1]
C3258037
Library/algorithm used to identify resistance mutations
Description

LIBRARY

Data type

text

Alias
UMLS CUI [1,1]
C0002045
UMLS CUI [1,2]
C0026882
UMLS CUI [1,3]
C1138797
Name/identifier of reference stain used to find mutations
Description

REFSEQ

Data type

text

Alias
UMLS CUI [1,1]
C0038128
UMLS CUI [1,2]
C0026882
UMLS CUI [1,3]
C1138797
Vendor and version/name of the kit used for the test
Description

KIT

Data type

text

Alias
UMLS CUI [1]
C2981406
Software and version used to determine resistance
Description

SOFTWARE

Data type

text

Alias
UMLS CUI [1,1]
C3827995
UMLS CUI [1,2]
C1138797
Type of test
Description

TESTTYPE

Data type

integer

Alias
UMLS CUI [1,1]
C0086143
UMLS CUI [1,2]
C0332307
Type of Virus
Description

VIRUSTYPE

Data type

integer

Alias
UMLS CUI [1,1]
C0042776
UMLS CUI [1,2]
C0332307
UMLS CUI [2]
C0019682
UMLS CUI [3]
C0220847
Subtype of HIV- or HCV-RNA
Description

SUBTYPE

Data type

text

Alias
UMLS CUI [1,1]
C0449560
UMLS CUI [1,2]
C0019682
UMLS CUI [2]
C0220847
The assigned sample ID at the lab where the resistance test is preformed.
Description

SAMP_LAB

Data type

text

Alias
UMLS CUI [1,1]
C1299222
UMLS CUI [1,2]
C0022877
The assigned sample ID from the centre.
Description

SAMP_INT

Data type

text

Alias
UMLS CUI [1,1]
C1299222
UMLS CUI [1,2]
C0018704

Similar models

Resistance testing (tblLAB_RES)

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Resistance testing
C1138797 (UMLS CUI-1)
C0151521 (UMLS CUI-2)
C0039593 (UMLS CUI-3)
C0019682 (UMLS CUI-4)
PATIENT
Item
Patient ID
text
C2348585 (UMLS CUI [1])
TEST_ID
Item
An arbitrary value identifying a resistance test result
text
C1138797 (UMLS CUI [1])
SAMPLE_D
Item
Date of the actual sample taken (NOT the test date)
date
C1302413 (UMLS CUI [1])
SEQ_DT
Item
Date and time when the sequencing was performed
date
C1138797 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
LAB
Item
Name of laboratory where the test was performed
text
C3258037 (UMLS CUI [1])
LIBRARY
Item
Library/algorithm used to identify resistance mutations
text
C0002045 (UMLS CUI [1,1])
C0026882 (UMLS CUI [1,2])
C1138797 (UMLS CUI [1,3])
REFSEQ
Item
Name/identifier of reference stain used to find mutations
text
C0038128 (UMLS CUI [1,1])
C0026882 (UMLS CUI [1,2])
C1138797 (UMLS CUI [1,3])
KIT
Item
Vendor and version/name of the kit used for the test
text
C2981406 (UMLS CUI [1])
SOFTWARE
Item
Software and version used to determine resistance
text
C3827995 (UMLS CUI [1,1])
C1138797 (UMLS CUI [1,2])
Item
Type of test
integer
C0086143 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
Code List
Type of test
CL Item
Genotype (1)
CL Item
Phenotype (2)
CL Item
Other (9)
Item
Type of Virus
integer
C0042776 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
C0019682 (UMLS CUI [2])
C0220847 (UMLS CUI [3])
Code List
Type of Virus
CL Item
HIV (1)
CL Item
HCV (2)
SUBTYPE
Item
Subtype of HIV- or HCV-RNA
text
C0449560 (UMLS CUI [1,1])
C0019682 (UMLS CUI [1,2])
C0220847 (UMLS CUI [2])
SAMP_LAB
Item
The assigned sample ID at the lab where the resistance test is preformed.
text
C1299222 (UMLS CUI [1,1])
C0022877 (UMLS CUI [1,2])
SAMP_INT
Item
The assigned sample ID from the centre.
text
C1299222 (UMLS CUI [1,1])
C0018704 (UMLS CUI [1,2])

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