This sample attributes table contains sample IDs, body site, analyte type, bacterial species (n=7 variables; salmonella, campylobacter, enteroaggregative E. coli, diffusely adherent E. coli, atypical enteropathic E. coli, enteroinvasive E. coli, and enterotoxigenic E. coli), norovirus genotypes G1 and G2, astrovirus, adenovirus, and name of the center which conducted sequencing.

pht006054
Beschrijving

pht006054

Alias
UMLS CUI [1,1]
C3846158
Sample ID
Beschrijving

SAMPLE_ID

Datatype

text

Alias
UMLS CUI [1,1]
C1299222
Body Site
Beschrijving

BODY_SITE

Datatype

string

Alias
UMLS CUI [1,1]
C1515974
Analyte Type
Beschrijving

ANALYTE_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C4744818
Salmonella
Beschrijving

SALM

Datatype

text

Alias
UMLS CUI [1,1]
C0036111
Campylobacter
Beschrijving

CAMP

Datatype

text

Alias
UMLS CUI [1,1]
C0006813
Enteroaggregative E. coli
Beschrijving

EAEC

Datatype

text

Alias
UMLS CUI [1,1]
C0872165
Diffusely adherent E. coli
Beschrijving

DAEC

Datatype

text

Alias
UMLS CUI [1,1]
C1562804
Atypical Enteropathic E. coli
Beschrijving

AEPEC

Datatype

text

Alias
UMLS CUI [1,1]
C0856436
UMLS CUI [1,2]
C0205182
Enteroinvasive E. coli
Beschrijving

EIEC

Datatype

text

Alias
UMLS CUI [1,1]
C0580795
Enterotoxigenic E. coli
Beschrijving

ETEC

Datatype

text

Alias
UMLS CUI [1,1]
C0580797
Norovirus Genotype G1
Beschrijving

NOROVIRUS_G1

Datatype

text

Alias
UMLS CUI [1,1]
C2709163
Norovirus Genotype G2
Beschrijving

NOROVIRUS_G2

Datatype

text

Alias
UMLS CUI [1,1]
C2709164
Astrovirus
Beschrijving

ASTROVIRUS

Datatype

text

Alias
UMLS CUI [1,1]
C0004120
Adenovirus
Beschrijving

ADENOVIRUS

Datatype

text

Alias
UMLS CUI [1,1]
C0001483
Sequencing Center
Beschrijving

SEQUENCING_CENTER

Datatype

string

Alias
UMLS CUI [1,1]
C5667250

Similar models

This sample attributes table contains sample IDs, body site, analyte type, bacterial species (n=7 variables; salmonella, campylobacter, enteroaggregative E. coli, diffusely adherent E. coli, atypical enteropathic E. coli, enteroinvasive E. coli, and enterotoxigenic E. coli), norovirus genotypes G1 and G2, astrovirus, adenovirus, and name of the center which conducted sequencing.

Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht006054
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
Sample ID
text
C1299222 (UMLS CUI [1,1])
BODY_SITE
Item
Body Site
string
C1515974 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Salmonella
text
C0036111 (UMLS CUI [1,1])
Code List
Salmonella
CL Item
Negative (0)
CL Item
Positive (1)
Item
Campylobacter
text
C0006813 (UMLS CUI [1,1])
Code List
Campylobacter
CL Item
Negative (0)
CL Item
Positive (1)
Item
Enteroaggregative E. coli
text
C0872165 (UMLS CUI [1,1])
Code List
Enteroaggregative E. coli
CL Item
Negative (0)
CL Item
Positive (1)
Item
Diffusely adherent E. coli
text
C1562804 (UMLS CUI [1,1])
Code List
Diffusely adherent E. coli
CL Item
Negative (0)
CL Item
Positive (1)
Item
Atypical Enteropathic E. coli
text
C0856436 (UMLS CUI [1,1])
C0205182 (UMLS CUI [1,2])
Code List
Atypical Enteropathic E. coli
CL Item
Negative (0)
CL Item
Positive (1)
Item
Enteroinvasive E. coli
text
C0580795 (UMLS CUI [1,1])
Code List
Enteroinvasive E. coli
CL Item
Negative (0)
CL Item
Positive (1)
Item
Enterotoxigenic E. coli
text
C0580797 (UMLS CUI [1,1])
Code List
Enterotoxigenic E. coli
CL Item
Negative (0)
CL Item
Positive (1)
Item
Norovirus Genotype G1
text
C2709163 (UMLS CUI [1,1])
Code List
Norovirus Genotype G1
CL Item
Negative (0)
CL Item
Positive (1)
Item
Norovirus Genotype G2
text
C2709164 (UMLS CUI [1,1])
Code List
Norovirus Genotype G2
CL Item
Negative (0)
CL Item
Positive (1)
Item
Astrovirus
text
C0004120 (UMLS CUI [1,1])
Code List
Astrovirus
CL Item
Negative (0)
CL Item
Positive (1)
Item
Adenovirus
text
C0001483 (UMLS CUI [1,1])
Code List
Adenovirus
CL Item
Negative (0)
CL Item
Positive (1)
SEQUENCING_CENTER
Item
Sequencing Center
string
C5667250 (UMLS CUI [1,1])