English

This sample attributes table contains sample IDs, body site, analyte type, bacterial species (n=7 variables; salmonella, campylobacter, enteroaggregative E. coli, diffusely adherent E. coli, atypical enteropathic E. coli, enteroinvasive E. coli, and enterotoxigenic E. coli), norovirus genotypes G1 and G2, astrovirus, adenovirus, and name of the center which conducted sequencing.

5 forms  
pht006054
Description

pht006054

Alias
UMLS CUI [1,1]
C3846158
Sample ID
Description

SAMPLE_ID

Data type

text

Alias
UMLS CUI [1,1]
C1299222
Body Site
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C1515974
Analyte Type
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
Salmonella
Description

SALM

Data type

text

Alias
UMLS CUI [1,1]
C0036111
Campylobacter
Description

CAMP

Data type

text

Alias
UMLS CUI [1,1]
C0006813
Enteroaggregative E. coli
Description

EAEC

Data type

text

Alias
UMLS CUI [1,1]
C0872165
Diffusely adherent E. coli
Description

DAEC

Data type

text

Alias
UMLS CUI [1,1]
C1562804
Atypical Enteropathic E. coli
Description

AEPEC

Data type

text

Alias
UMLS CUI [1,1]
C0856436
UMLS CUI [1,2]
C0205182
Enteroinvasive E. coli
Description

EIEC

Data type

text

Alias
UMLS CUI [1,1]
C0580795
Enterotoxigenic E. coli
Description

ETEC

Data type

text

Alias
UMLS CUI [1,1]
C0580797
Norovirus Genotype G1
Description

NOROVIRUS_G1

Data type

text

Alias
UMLS CUI [1,1]
C2709163
Norovirus Genotype G2
Description

NOROVIRUS_G2

Data type

text

Alias
UMLS CUI [1,1]
C2709164
Astrovirus
Description

ASTROVIRUS

Data type

text

Alias
UMLS CUI [1,1]
C0004120
Adenovirus
Description

ADENOVIRUS

Data type

text

Alias
UMLS CUI [1,1]
C0001483
Sequencing Center
Description

SEQUENCING_CENTER

Data type

string

Alias
UMLS CUI [1,1]
C5667250
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Similar models

This sample attributes table contains sample IDs, body site, analyte type, bacterial species (n=7 variables; salmonella, campylobacter, enteroaggregative E. coli, diffusely adherent E. coli, atypical enteropathic E. coli, enteroinvasive E. coli, and enterotoxigenic E. coli), norovirus genotypes G1 and G2, astrovirus, adenovirus, and name of the center which conducted sequencing.

5 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht006054
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
Sample ID
text
C1299222 (UMLS CUI [1,1])
BODY_SITE
Item
Body Site
string
C1515974 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Salmonella
text
C0036111 (UMLS CUI [1,1])
SALM
Code List
Salmonella
CL Item
Negative (0)
CL Item
Positive (1)
Item
Campylobacter
text
C0006813 (UMLS CUI [1,1])
CAMP
Code List
Campylobacter
CL Item
Negative (0)
CL Item
Positive (1)
Item
Enteroaggregative E. coli
text
C0872165 (UMLS CUI [1,1])
EAEC
Code List
Enteroaggregative E. coli
CL Item
Negative (0)
CL Item
Positive (1)
Item
Diffusely adherent E. coli
text
C1562804 (UMLS CUI [1,1])
DAEC
Code List
Diffusely adherent E. coli
CL Item
Negative (0)
CL Item
Positive (1)
Item
Atypical Enteropathic E. coli
text
C0856436 (UMLS CUI [1,1])
C0205182 (UMLS CUI [1,2])
AEPEC
Code List
Atypical Enteropathic E. coli
CL Item
Negative (0)
CL Item
Positive (1)
Item
Enteroinvasive E. coli
text
C0580795 (UMLS CUI [1,1])
EIEC
Code List
Enteroinvasive E. coli
CL Item
Negative (0)
CL Item
Positive (1)
Item
Enterotoxigenic E. coli
text
C0580797 (UMLS CUI [1,1])
ETEC
Code List
Enterotoxigenic E. coli
CL Item
Negative (0)
CL Item
Positive (1)
Item
Norovirus Genotype G1
text
C2709163 (UMLS CUI [1,1])
NOROVIRUS_G1
Code List
Norovirus Genotype G1
CL Item
Negative (0)
CL Item
Positive (1)
Item
Norovirus Genotype G2
text
C2709164 (UMLS CUI [1,1])
NOROVIRUS_G2
Code List
Norovirus Genotype G2
CL Item
Negative (0)
CL Item
Positive (1)
Item
Astrovirus
text
C0004120 (UMLS CUI [1,1])
ASTROVIRUS
Code List
Astrovirus
CL Item
Negative (0)
CL Item
Positive (1)
Item
Adenovirus
text
C0001483 (UMLS CUI [1,1])
ADENOVIRUS
Code List
Adenovirus
CL Item
Negative (0)
CL Item
Positive (1)
SEQUENCING_CENTER
Item
Sequencing Center
string
C5667250 (UMLS CUI [1,1])
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