English

Fluid samples

1 forms  
  1. StudyEvent: ODM
    1. Fluid samples
Type of sample
Description

Type of sample

Alias
UMLS CUI-1
C2347029
Type of sample
Description

Type of sample

Data type

text

Alias
UMLS CUI [1,1]
C2347029
UMLS CUI [1,2]
C1704353
Type of primary container
Description

Type of primary container

Data type

text

Alias
UMLS CUI [1,1]
C0180098
UMLS CUI [1,2]
C0332307
Pre-centrifugation (delay between collection and processing)
Description

*RT, room temperature: 18 to 28 °C

Data type

text

Alias
UMLS CUI [1,1]
C2985752
UMLS CUI [1,2]
C1516698
UMLS CUI [1,3]
C1709694
Centrifugation
Description

Centrifugation

Data type

text

Alias
UMLS CUI [1]
C0007703
Second Centrifugation
Description

Second Centrifugation

Data type

text

Alias
UMLS CUI [1]
C0007703
Post-centrifugation delay
Description

Post-centrifugation delay

Data type

text

Alias
UMLS CUI [1,1]
C0032756
UMLS CUI [1,2]
C0007703
UMLS CUI [1,3]
C0205421
Long-term storage
Description

**PP, polypropylene ***LN, liquid nitrogen, referring to either vapor- or liquid-phase (this information being documented in the biobank’s SOPs)

Data type

text

Alias
UMLS CUI [1,1]
C0443252
UMLS CUI [1,2]
C1698986
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Similar models

Fluid samples

1 forms
  1. StudyEvent: ODM
    1. Fluid samples
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Type of sample
C2347029 (UMLS CUI-1)
Item
Type of sample
text
C2347029 (UMLS CUI [1,1])
C1704353 (UMLS CUI [1,2])
Type of sample
Code List
Type of sample
CL Item
Ascites fluid (ASC)
(Comment:en)
CL Item
Amniotic fluid (AMN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Bronchoalveolar lavage (BAL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Blood (whole) (BLD)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Bone marrow aspirate (BMA)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Breast milk (BMK)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Buccal cells (BUC)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Unficolled buffy coat, non-viable (BFF)
(Comment:en)
CL Item
Ficoll mononuclear cells, viable (CEL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Fresh cells from non-blood specimen type (CEN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Cells from non blood specimen type(e.g. ascites, amniotic), viable (CLN)
(Comment:en)
CL Item
Cord blood (CRD)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Cerebrospinal fluid (CSF)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Dried whole blood (e.g. Guthrie cards) (DWB)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Nasal washing (NAS)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Ficoll mononuclear cells, non viable (PEL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Cells from non blood specimen type (e.g. ascites, amniotic), non-viable (PEN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Pleural fluid (PFL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Plasma, single spun (PL1)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Plasma, double spun (PL2)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Red blood cells (RBC)
(Comment:en)
CL Item
Saliva (SAL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Semen (SEM)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Serum (SER)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Sputum (SPT)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Stool (STL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Synovial fluid (SYN)
(Comment:en)
CL Item
Tears (TER)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
24 h urine (U24)
(Comment:en)
CL Item
Urine, random (“spot”) (URN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Urine, first morning (URM)
(Comment:en)
CL Item
Urine, timed (URT)
(Comment:en)
CL Item
Other (ZZZ)
(Comment:en)
CL Item
Unficolled buffy coat, viable (BUF)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
Item
Type of primary container
text
C0180098 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
Type of primary container
Code List
Type of primary container
CL Item
Acid citrate dextrose  (ACD)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Additives (ADD)
(Comment:en)
CL Item
Serum tube without clot activator (CAT)
(Comment:en)
CL Item
Citrate phosphate dextrose (CPD)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Cell Preparation Tube® (CPT)
(Comment:en)
CL Item
EDTA and gel (EDG)
(Comment:en)
CL Item
Lithium heparin (HEP)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Hirudin (HIR)
(Comment:en)
CL Item
Lithium heparin and gel  (LHG)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Oragene collection container or equivalent  (ORG)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
PAXgene® blood RNA+  (PAX)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Potassium EDTA  (PED)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Polyethylene tube sterile  (PET)
(Comment:en)
CL Item
S8820 protease inhibitor tablets or equivalent  (PI1)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Protease inhibitors  (PIX)
(Comment:en)
CL Item
Polypropylene tube sterile  (PPS)
(Comment:en)
CL Item
PAXgene® blood DNA  (PXD)
(Comment:en)
CL Item
PAXgene® bone marrow RNA  (PXR)
(Comment:en)
CL Item
Sodium citrate  (SCI)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Sodium EDTA  (SED)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Sodium heparin  (SHP)
(Comment:en)
CL Item
Sodium fluoride/potassium oxalate  (SPO)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Serum separator tube with clot activator  (SST)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Tempus® tube  (TEM)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Trace elements tube  (TRC)
(Comment:en)
CL Item
Unknown  (XXX)
(Comment:en)
CL Item
Other  (ZZZ)
(Comment:en)
Item
Pre-centrifugation (delay between collection and processing)
text
C2985752 (UMLS CUI [1,1])
C1516698 (UMLS CUI [1,2])
C1709694 (UMLS CUI [1,3])
Pre-centrifugation (delay between collection and processing)
Code List
Pre-centrifugation (delay between collection and processing)
CL Item
RT* <2 h  (A)
CL Item
2 to 10 °C <2 h  (B)
CL Item
RT 2-4 h  (C)
CL Item
2 to 10 °C 2-4 h  (D)
CL Item
RT 4-8 h  (E)
CL Item
2 to 10 °C 4-8 h  (F)
CL Item
RT 8-12 h  (G)
CL Item
2 to 10 °C 8-12 h  (H)
CL Item
RT 12-24 h  (I)
CL Item
2 to 10 °C 12-24 h  (J)
CL Item
RT 24-48 h  (K)
CL Item
2 to 10 °C 24-48 h  (L)
CL Item
RT >48 h  (M)
CL Item
2 to 10 °C >48 h  (N)
CL Item
35 to 38 °C <2 h  (O)
CL Item
Unknown  (X)
CL Item
Other  (Z)
Item
Centrifugation
text
C0007703 (UMLS CUI [1])
Centrifugation
Code List
Centrifugation
CL Item
RT 10 to 15 min <3000 g no braking  (A)
CL Item
RT 10 to 15 min <3000 g with braking  (B)
CL Item
2 to 10 °C 10 to 15 min <3000 g no braking  (C)
CL Item
2 to 10 °C 10 to 15 min <3000 g with braking  (D)
CL Item
RT 10 to 15 min 3000 g to 6000 g with braking  (E)
CL Item
2 to 10 °C 10 to 15 min 3000 g to 6000 g with braking  (F)
CL Item
RT 10 to 15 min 6000 g to 10000 g with braking  (G)
CL Item
2 to 10 °C 10 to 15 min 6000 g to 10000 g with braking  (H)
CL Item
RT 10 to 15 min >10000 g with braking  (I)
CL Item
2 to 10 °C 10 to 15 min >10000 g with braking  (J)
CL Item
RT 30 min <1000 g no braking  (M)
CL Item
No centrifugation  (N)
CL Item
Unknown  (X)
CL Item
Other  (Z)
Item
Second Centrifugation
text
C0007703 (UMLS CUI [1])
Centrifugation
Code List
Second Centrifugation
CL Item
RT 10 to 15 min <3000 g no braking  (A)
CL Item
RT 10 to 15 min <3000 g with braking  (B)
CL Item
2 to 10 °C 10 to 15 min <3000 g no braking  (C)
CL Item
2 to 10 °C 10 to 15 min <3000 g with braking  (D)
CL Item
RT 10 to 15 min 3000 g to 6000 g with braking  (E)
CL Item
2 to 10 °C 10 to 15 min 3000 g to 6000 g with braking  (F)
CL Item
RT 10 to 15 min 6000 g to 10000 g with braking  (G)
CL Item
2 to 10 °C 10 to 15 min 6000 g to 10000 g with braking  (H)
CL Item
RT 10 to 15 min >10000 g with braking  (I)
CL Item
2 to 10 °C 10 to 15 min >10000 g with braking  (J)
CL Item
RT 30 min <1000 g no braking  (M)
CL Item
No centrifugation  (N)
CL Item
Unknown  (X)
CL Item
Other  (Z)
Item
Post-centrifugation delay
text
C0032756 (UMLS CUI [1,1])
C0007703 (UMLS CUI [1,2])
C0205421 (UMLS CUI [1,3])
Post-centrifugation delay
Code List
Post-centrifugation delay
CL Item
<1 h 2 to 10 °C  (A)
CL Item
<1 h RT  (B)
CL Item
1 to 2 h 2 to 10 °C  (C)
CL Item
1 to 2 h RT  (D)
CL Item
2 to 8 h 2 to 10 °C  (E)
CL Item
2 to 8 h RT  (F)
CL Item
8 to 24 h 2 to 10 °C  (G)
CL Item
8 to 24 h RT  (H)
CL Item
>24 h 2 to 10 °C  (I)
CL Item
>24 h RT  (J)
CL Item
Not applicable  (N)
CL Item
Unknown  (X)
CL Item
Other  (Z)
Item
Long-term storage
text
C0443252 (UMLS CUI [1,1])
C1698986 (UMLS CUI [1,2])
Long-term storage
Code List
Long-term storage
CL Item
PP tube 0.5- to 2-mL** (-85) to (-60) ° C  (A)
CL Item
PP tube 0.5- to 2-mL (-35) to (-18) °C  (B)
CL Item
PP tube 0.5- to 2-mL <-135 °C  (V)
CL Item
Cryotube 1- to 2-mL LN***  (C)
CL Item
Cryotube 1- to 2-mL (-85) to (-60) °C  (D)
CL Item
Cryotube 1- to 2-mL Programmable freezing to <-135 °C  (E)
CL Item
Plastic cryo straw LN***  (F)
CL Item
Straw (-85) to (-60) °C  (G)
CL Item
Straw (-35) to (-18) °C  (H)
CL Item
Straw Programmable freezing to <-135 °C  (I)
CL Item
PP tube ≥ 5 mL (-85) to (-60) °C  (J)
CL Item
PP tube ≥ 5 mL (-35) to (-18) °C  (K)
CL Item
Microplate (-85) to (-60) °C  (L)
CL Item
Microplate (-35) to (-18) °C  (M)
CL Item
Cryotube 1- to 2-mL LN*** after temporary (-85) to (-60) °C  (N)
CL Item
Plastic cryo straw LN*** after temporary (-85) to (-60) °C  (O)
CL Item
Paraffin block RT or 2 to 10 °C  (P)
CL Item
Bag LN***  (Q)
CL Item
Dry technology medium RT  (R)
CL Item
PP tube 40- to 500-L (-85) to (-60) °C  (S)
CL Item
PP tube 40- to 500-L (-35) to (-18) °C  (T)
CL Item
PP tube 40- to 500-L <-135 ° C  (W)
CL Item
Original primary container (-35) to (-18) °C or (-85) to (-60) °C  (Y)
CL Item
Unknown  (X)
CL Item
Other  (Z)
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