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Biobanking Basic Set

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  1. StudyEvent: ODM
    1. Biobanking Basic Set
Number of filled aliquot tubes
Beschrijving

Number of filled aliquot tubes

Alias
UMLS CUI-1
C1510844
UMLS CUI-2
C1561954
UMLS CUI-3
C0750480
Serum
Beschrijving

Number of filled serum tubes [300µl] Should be: 10

Datatype

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C1292516
EDTA plasma
Beschrijving

Number of filled EDTA tubes [300µl] Should be: 10

Datatype

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C3872626
Citrate plasma
Beschrijving

Number of filled Citrate tubes [300µl] Should be: 4

Datatype

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C3872791
Urine
Beschrijving

Number of filled Urine tubes [300µl] Should be: 8

Datatype

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C0489902
Buffy coat
Beschrijving

Number of filled Buffy Coat tubes [< 300µl] Should be: 2

Datatype

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C1561954
UMLS CUI [1,3]
C2936475
Blood and Urine collection
Beschrijving

Blood and Urine collection

Alias
UMLS CUI-1
C0005834
UMLS CUI-2
C0200354
Blood collection
Beschrijving

Blood collected

Datatype

text

Alias
UMLS CUI [1,1]
C0005834
UMLS CUI [1,2]
C0449416
Position during blood collection
Beschrijving

Position during blood collection

Datatype

text

Alias
UMLS CUI [1,1]
C0005834
UMLS CUI [1,2]
C1262869
Duration of position prior to blood collection
Beschrijving

How long was the patient/subject in this position prior to blood collection? in min

Datatype

integer

Maateenheden
  • min
Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C1262869
UMLS CUI [1,3]
C0332152
UMLS CUI [1,4]
C0005834
min
Duration of position prior to blood collection
Beschrijving

Duration of position prior to blood collection

Datatype

boolean

Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C1262869
UMLS CUI [1,3]
C0332152
UMLS CUI [1,4]
C0005834
Time interval since last food intake
Beschrijving

Time interval since last food intake

Datatype

text

Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C0687676
UMLS CUI [1,3]
C0578574
Time interval since last food intake
Beschrijving

Total number of hours, if known

Datatype

integer

Maateenheden
  • hours
Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C0687676
UMLS CUI [1,3]
C0578574
hours
Parenteral nutrition
Beschrijving

Parenteral nutrition

Datatype

text

Alias
UMLS CUI [1]
C0030547
Menstruating at time of urine collection
Beschrijving

For women: Menstruating at time of urine collection

Datatype

text

Alias
UMLS CUI [1,1]
C0025344
UMLS CUI [1,2]
C0347984
UMLS CUI [1,3]
C0200354
Process steps
Beschrijving

Process steps

Alias
UMLS CUI-1
C0022885
UMLS CUI-2
C1261552
Time of blood collection
Beschrijving

Date/Time of blood collection

Datatype

datetime

Alias
UMLS CUI [1,1]
C0005834
UMLS CUI [1,2]
C1264639
Time of urine collection
Beschrijving

Time of urine collection(clinic).

Datatype

datetime

Alias
UMLS CUI [1,1]
C1264639
UMLS CUI [1,2]
C0200354
Time of receipt at the laboratory
Beschrijving

The primary receptacles along with the Biomaterial Collection Form and the aliquot tubes (rack) should be transported to the laboratory, if possible, within 60 minutes after collection of the biomaterial.

Datatype

datetime

Alias
UMLS CUI [1,1]
C1264639
UMLS CUI [1,2]
C3873589
Time of receipt at the laboratory (urine)
Beschrijving

Only if time of receipt of urine differs from blood, complete for urine

Datatype

datetime

Alias
UMLS CUI [1,1]
C1264639
UMLS CUI [1,2]
C3873589
UMLS CUI [1,3]
C1610733
End of centrifugation
Beschrijving

Centrifuge the primary receptacles at 2,000 g for 10 minutes OR 3,000 g for 5 minutes; refrigerated centrifuges: set temperature to 18°C; non-refrigerated centrifuges: allow centrifuge to cool down after each run. End of centrifugation; date, if different from time of receipt at the laboratory, otherwise, Timestamp with hour and minute

Datatype

partialDatetime

Alias
UMLS CUI [1,1]
C3899266
UMLS CUI [1,2]
C0200364
End of centrifugation (urine)
Beschrijving

If time of receipt of urine differs from blood, please complete for urine: Timestamp with hour and minute

Datatype

partialDatetime

Alias
UMLS CUI [1,1]
C3899266
UMLS CUI [1,2]
C0200364
UMLS CUI [1,3]
C1610733
Time of freezing of all aliquots
Beschrijving

Time of freezing of all aliquots at -80°C or lower (Serum, EDTA plasma, Citrate plasma, Urine, Buffy Coat).

Datatype

datetime

Alias
UMLS CUI [1,1]
C1264639
UMLS CUI [1,2]
C0200367
Sample properties (blood)
Beschrijving

Sample properties (blood)

Alias
UMLS CUI-1
C0178913
UMLS CUI-2
C0871161
Normal
Beschrijving

Is the sample normal?

Datatype

text

Alias
UMLS CUI [1,1]
C0178913
UMLS CUI [1,2]
C0205307
Lipaemic
Beschrijving

Is the sample lipaemic?

Datatype

text

Alias
UMLS CUI [1,1]
C0178913
UMLS CUI [1,2]
C0460077
Icteric
Beschrijving

Is the sample icteric?

Datatype

text

Alias
UMLS CUI [1,1]
C0178913
UMLS CUI [1,2]
C0460078
Haemolytic
Beschrijving

Is the sample haemolytic?

Datatype

text

Alias
UMLS CUI [1,1]
C0178913
UMLS CUI [1,2]
C0312853
Sample properties (urine)
Beschrijving

Sample properties (urine)

Alias
UMLS CUI-1
C0871161
UMLS CUI-2
C1610733
Normal
Beschrijving

Is the sample normal?

Datatype

text

Alias
UMLS CUI [1,1]
C1610733
UMLS CUI [1,2]
C0205307
Cloudy
Beschrijving

Is the sample cloudy?

Datatype

text

Alias
UMLS CUI [1,1]
C1610733
UMLS CUI [1,2]
C0278034
Bloody
Beschrijving

Is the sample bloody?

Datatype

text

Alias
UMLS CUI [1,1]
C1610733
UMLS CUI [1,2]
C0333275
Commentaries
Beschrijving

Commentaries

Alias
UMLS CUI-1
C0947611
Commentaries (general)
Beschrijving

Comments (general)

Datatype

text

Alias
UMLS CUI [1]
C0947611
Commentaries (aliquots)
Beschrijving

Comments (aliquots)

Datatype

text

Alias
UMLS CUI [1,1]
C1510844
UMLS CUI [1,2]
C0947611
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Similar models

Biobanking Basic Set

1 Formulieren
  1. StudyEvent: ODM
    1. Biobanking Basic Set
Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
Number of filled aliquot tubes
C1510844 (UMLS CUI-1)
C1561954 (UMLS CUI-2)
C0750480 (UMLS CUI-3)
Number of serum tubes
Item
Serum
integer
C0750480 (UMLS CUI [1,1])
C1292516 (UMLS CUI [1,2])
Number of EDTA plasma tubes
Item
EDTA plasma
integer
C0750480 (UMLS CUI [1,1])
C3872626 (UMLS CUI [1,2])
Number of citrate tubes
Item
Citrate plasma
integer
C0750480 (UMLS CUI [1,1])
C3872791 (UMLS CUI [1,2])
Number of urine tubes
Item
Urine
integer
C0750480 (UMLS CUI [1,1])
C0489902 (UMLS CUI [1,2])
Number of buffy coat tubes
Item
Buffy coat
integer
C0750480 (UMLS CUI [1,1])
C1561954 (UMLS CUI [1,2])
C2936475 (UMLS CUI [1,3])
Item Group
Blood and Urine collection
C0005834 (UMLS CUI-1)
C0200354 (UMLS CUI-2)
Item
Blood collection
text
C0005834 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
Blood source
Code List
Blood collection
CL Item
venous (venous)
CL Item
arterial (arterial)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Position during blood collection
text
C0005834 (UMLS CUI [1,1])
C1262869 (UMLS CUI [1,2])
Position during blood collection
Code List
Position during blood collection
CL Item
sitting (sitting)
CL Item
lying (lying)
CL Item
unkown (unkown)
CL Item
not assessed (not assessed)
Duration of position prior to blood collection
Item
Duration of position prior to blood collection
integer
C0449238 (UMLS CUI [1,1])
C1262869 (UMLS CUI [1,2])
C0332152 (UMLS CUI [1,3])
C0005834 (UMLS CUI [1,4])
Duration of position prior to blood collection
Item
Duration of position prior to blood collection
boolean
C0449238 (UMLS CUI [1,1])
C1262869 (UMLS CUI [1,2])
C0332152 (UMLS CUI [1,3])
C0005834 (UMLS CUI [1,4])
Item
Time interval since last food intake
text
C0449238 (UMLS CUI [1,1])
C0687676 (UMLS CUI [1,2])
C0578574 (UMLS CUI [1,3])
Time since last food intake
Code List
Time interval since last food intake
CL Item
< 8 h (< 8 h)
CL Item
unkown (unkown)
CL Item
not assessed (not assessed)
CL Item
 (≥ 8 h)
Hours since last food intake
Item
Time interval since last food intake
integer
C0449238 (UMLS CUI [1,1])
C0687676 (UMLS CUI [1,2])
C0578574 (UMLS CUI [1,3])
Item
Parenteral nutrition
text
C0030547 (UMLS CUI [1])
Parenteral nutrition
Code List
Parenteral nutrition
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Menstruating at time of urine collection
text
C0025344 (UMLS CUI [1,1])
C0347984 (UMLS CUI [1,2])
C0200354 (UMLS CUI [1,3])
Parenteral nutrition
Code List
Menstruating at time of urine collection
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item Group
Process steps
C0022885 (UMLS CUI-1)
C1261552 (UMLS CUI-2)
Date/Time of blood collection
Item
Time of blood collection
datetime
C0005834 (UMLS CUI [1,1])
C1264639 (UMLS CUI [1,2])
Date/Time of urine collection
Item
Time of urine collection
datetime
C1264639 (UMLS CUI [1,1])
C0200354 (UMLS CUI [1,2])
Date/Time of receipt at laboratory
Item
Time of receipt at the laboratory
datetime
C1264639 (UMLS CUI [1,1])
C3873589 (UMLS CUI [1,2])
Date/Time of urine receipt at the laboratory
Item
Time of receipt at the laboratory (urine)
datetime
C1264639 (UMLS CUI [1,1])
C3873589 (UMLS CUI [1,2])
C1610733 (UMLS CUI [1,3])
End Date/Time of centrifugation
Item
End of centrifugation
partialDatetime
C3899266 (UMLS CUI [1,1])
C0200364 (UMLS CUI [1,2])
End Date/Time of urine centrifugation
Item
End of centrifugation (urine)
partialDatetime
C3899266 (UMLS CUI [1,1])
C0200364 (UMLS CUI [1,2])
C1610733 (UMLS CUI [1,3])
Date/Time freezing all aliquots
Item
Time of freezing of all aliquots
datetime
C1264639 (UMLS CUI [1,1])
C0200367 (UMLS CUI [1,2])
Item Group
Sample properties (blood)
C0178913 (UMLS CUI-1)
C0871161 (UMLS CUI-2)
Item
Normal
text
C0178913 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Normal
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Lipaemic
text
C0178913 (UMLS CUI [1,1])
C0460077 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Lipaemic
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Icteric
text
C0178913 (UMLS CUI [1,1])
C0460078 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Icteric
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Haemolytic
text
C0178913 (UMLS CUI [1,1])
C0312853 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Haemolytic
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item Group
Sample properties (urine)
C0871161 (UMLS CUI-1)
C1610733 (UMLS CUI-2)
Item
Normal
text
C1610733 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Normal
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Cloudy
text
C1610733 (UMLS CUI [1,1])
C0278034 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Cloudy
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Bloody
text
C1610733 (UMLS CUI [1,1])
C0333275 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Bloody
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item Group
Commentaries
C0947611 (UMLS CUI-1)
Comments (general)
Item
Commentaries (general)
text
C0947611 (UMLS CUI [1])
Comments (aliquots)
Item
Commentaries (aliquots)
text
C1510844 (UMLS CUI [1,1])
C0947611 (UMLS CUI [1,2])
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