MODULE 1: PRESENTATION/ADMISSION CASE REPORT FORM

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Participant Identification
C3165543 (UMLS CUI-1)
Participant Identification Numbers
Item
Participant Identification Numbers
text
C3165543 (UMLS CUI [1])
Item Group
Clinical Inclusion Criteria
C1512693 (UMLS CUI-1)
C0243161 (UMLS CUI-2)
Suspected or proven Coronavirus infection
Item
Suspected or confirmed novel coronavirus (COVID-19) infection:
boolean
C0392360 (UMLS CUI [1,1])
C0030673 (UMLS CUI [1,2])
C3838696 (UMLS CUI [1,3])
C0392360 (UMLS CUI [2,1])
C0030673 (UMLS CUI [2,2])
C0206750 (UMLS CUI [2,3])
C0456369 (UMLS CUI [2,4])
Item Group
Demographics
C1704791 (UMLS CUI-1)
Clinical centre name
Item
Clinical centre name
text
C1552416 (UMLS CUI [1,1])
C0027365 (UMLS CUI [1,2])
Country
Item
Country
text
C0454664 (UMLS CUI [1])
Enrollment date / first covid-19 assessment
Item
Enrolment date /first COVID-19 assessment date:
date
C1516879 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0205435 (UMLS CUI [2,1])
C5203670 (UMLS CUI [2,2])
C2985720 (UMLS CUI [2,3])
Ethnic group: Arab
Item
Ethnic group: Arab
boolean
C0282540 (UMLS CUI [1])
Ethnic group: Black
Item
Ethnic group: Black
boolean
C0005680 (UMLS CUI [1])
Ethnic group: East Asian
Item
Ethnic group: East Asian
boolean
C4540996 (UMLS CUI [1])
Ethnic group: South Asian
Item
Ethnic group: South Asian
boolean
C1519427 (UMLS CUI [1])
Ethnic group: West Asian
Item
Ethnic group: West Asian
boolean
C0003984 (UMLS CUI [1,1])
C0015031 (UMLS CUI [1,2])
Ethnic group: Latin American
Item
Ethnic group: Latin American
boolean
C1553378 (UMLS CUI [1])
Ethnic group: White
Item
Ethnic group: White
boolean
C0007457 (UMLS CUI [1])
Ethnic group: Aboriginal/First Nations
Item
Ethnic group: Aboriginal/First Nations
boolean
C0935542 (UMLS CUI [1])
Other ethnic group
Item
Other ethnic group
boolean
C0205394 (UMLS CUI [1,1])
C0015031 (UMLS CUI [1,2])
Other ethnic group Specification
Item
If Other ethnic group, please specify:
text
C0205394 (UMLS CUI [1,1])
C0015031 (UMLS CUI [1,2])
C2348235 (UMLS CUI [1,3])
Unknown ethnic group
Item
Unknown ethnic group
boolean
C0439673 (UMLS CUI [1,1])
C0015031 (UMLS CUI [1,2])
Item
Employed as a Healthcare Worker?
integer
C0557351 (UMLS CUI [1,1])
C0018724 (UMLS CUI [1,2])
Code List
Employed as a Healthcare Worker?
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Employed in a microbiology laboratory?
integer
C0557351 (UMLS CUI [1,1])
C0181826 (UMLS CUI [1,2])
Code List
Employed in a microbiology laboratory?
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Sex at Birth
integer
C4019317 (UMLS CUI [1])
Code List
Sex at Birth
CL Item
Male (1)
CL Item
Female (2)
CL Item
Not specified/Unknown (3)
Estimated Age in years
Item
Estimated age in years
integer
C0750572 (UMLS CUI [1,1])
C1510829 (UMLS CUI [1,2])
Estimated Age in months
Item
Estimated age in months
integer
C0750572 (UMLS CUI [1,1])
C1510828 (UMLS CUI [1,2])
Item
Pregnant?
integer
C0549206 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Gestational week assessment
Item
If YES: Gestational weeks assessment:
integer
C2825545 (UMLS CUI [1])
Item Group
Post Partum
C0032804 (UMLS CUI-1)
Item
Post Partum?
integer
C0032804 (UMLS CUI [1])
Code List
Post Partum?
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
If post partum, pregnancy outcome:
integer
C0032972 (UMLS CUI [1])
Code List
If post partum, pregnancy outcome:
CL Item
Live birth (1)
CL Item
Still birth (2)
Delivery date
Item
If post partum, delivery date:
date
C2053594 (UMLS CUI [1])
Item
If post partum, baby tested for COVID-19/SARS-CoV-2 infection?
integer
C0021270 (UMLS CUI [1,1])
C0022885 (UMLS CUI [1,2])
C0884358 (UMLS CUI [1,3])
C5203676 (UMLS CUI [1,4])
Code List
If post partum, baby tested for COVID-19/SARS-CoV-2 infection?
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
If baby got tested, result of the test:
integer
C0021270 (UMLS CUI [1,1])
C1254360 (UMLS CUI [1,2])
C5203676 (UMLS CUI [1,3])
Code List
If baby got tested, result of the test:
CL Item
Positive (1)
(Comment:en)
CL Item
Negative (2)
(Comment:en)
CL Item
Unknown (3)
(Comment:en)
Item Group
Infant – Less than 1 year old
C0021270 (UMLS CUI-1)
Infant
Item
Infant – Less than 1 year old?
boolean
C0021270 (UMLS CUI [1])
Birth weight
Item
Birth weight
float
C0005612 (UMLS CUI [1])
Item
Birth weight unit/unknown
integer
C0005612 (UMLS CUI [1,1])
C0439148 (UMLS CUI [1,2])
C0005612 (UMLS CUI [2,1])
C0439673 (UMLS CUI [2,2])
C0005612 (UMLS CUI [3,1])
C0439148 (UMLS CUI [3,2])
C0439673 (UMLS CUI [3,3])
Code List
Birth weight unit/unknown
CL Item
kg (1)
CL Item
lbs (2)
CL Item
unknown (3)
Item
Gestational outcome
integer
C1286282 (UMLS CUI [1])
Code List
Gestational outcome
CL Item
Term birth (≥37wk GA) (1)
CL Item
Preterm birth (<37wk GA) (2)
CL Item
Unknown (3)
Item
Breastfed?
integer
C0006147 (UMLS CUI [1])
Code List
Breastfed?
CL Item
Yes - currently breastfeeding (1)
CL Item
Yes - breastfeeding discontinued (2)
CL Item
No (3)
CL Item
Unknown (4)
Item
Vaccinations appropriate for age/country?
integer
C1443394 (UMLS CUI [1,1])
C1548787 (UMLS CUI [1,2])
C0001779 (UMLS CUI [1,3])
C1443394 (UMLS CUI [2,1])
C1548787 (UMLS CUI [2,2])
C0454664 (UMLS CUI [2,3])
Code List
Vaccinations appropriate for age/country?
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item Group
Onset and admission
C0277793 (UMLS CUI-1)
C0184666 (UMLS CUI-2)
Onset date of first/earliest symptom
Item
Onset date of first/earliest symptom:
date
C0574845 (UMLS CUI [1,1])
C0205435 (UMLS CUI [1,2])
C1457887 (UMLS CUI [1,3])
Admission date at this facility
Item
Most recent presentation/admission date at this facility
date
C1302393 (UMLS CUI [1])
Item
Was the patient admitted previously or transferred from any other facility during this illness episode?
integer
C4264524 (UMLS CUI [1])
Code List
Was the patient admitted previously or transferred from any other facility during this illness episode?
CL Item
YES - admitted previously to this facility (1)
CL Item
YES - transferred from other facility (2)
CL Item
No (3)
CL Item
Unknown (4)
Item
Has this patient’s data been previously collected under a different patient number?
integer
C3165543 (UMLS CUI [1,1])
C4264524 (UMLS CUI [1,2])
Code List
Has this patient’s data been previously collected under a different patient number?
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Participant ID at transferring facility
Item
If YES, Participant Identification number (PIN):
text
C3165543 (UMLS CUI [1,1])
C4264524 (UMLS CUI [1,2])
C2348235 (UMLS CUI [1,3])
Item Group
Signs and symptoms at hospital admission
C0037088 (UMLS CUI-1)
C0184666 (UMLS CUI-2)
Body temperature
Item
Body temperature
float
C0005903 (UMLS CUI [1])
Item
Temperature unit
integer
C0005903 (UMLS CUI [1,1])
C1519795 (UMLS CUI [1,2])
Code List
Temperature unit
CL Item
Celsius (1)
CL Item
Fahrenheit (2)
Heart Rate
Item
Heart Rate (HR):
integer
C0018810 (UMLS CUI [1])
Respiratory rate
Item
Respiratory rate (RR)
integer
C0231832 (UMLS CUI [1])
Systolic BP
Item
Systolic blood pressure
integer
C0871470 (UMLS CUI [1])
Diastolic BP
Item
Diastolic blood pressure
integer
C0428883 (UMLS CUI [1])
Oxygen saturation
Item
Oxygen saturation
integer
C0523807 (UMLS CUI [1])
Item
Oxygen saturation under which condition?
integer
C0523807 (UMLS CUI [1,1])
C0449438 (UMLS CUI [1,2])
Code List
Oxygen saturation under which condition?
CL Item
Room air (1)
CL Item
Oxygen therapy (2)
CL Item
N/A (3)
Item
Sternal capillary refill time >2seconds
integer
C1714880 (UMLS CUI [1])
Code List
Sternal capillary refill time >2seconds
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Height
Item
Height:
integer
C0005890 (UMLS CUI [1])
Weight
Item
Weight:
integer
C0005910 (UMLS CUI [1])
Item Group
Admission signs and symptoms
C0037088 (UMLS CUI-1)
C0184666 (UMLS CUI-2)
Item
History of fever
integer
C0015967 (UMLS CUI [1,1])
C0019664 (UMLS CUI [1,2])
Code List
History of fever
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Cough
integer
C0010200 (UMLS CUI [1])
Code List
Cough
CL Item
YES-non-productive (1)
CL Item
YES-productive (2)
CL Item
YES-with haemoptysis (3)
CL Item
No (4)
CL Item
Unknown (5)
Item
Sore throat
integer
C0242429 (UMLS CUI [1])
Code List
Sore throat
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Runny nose (Rhinorrhoea)
integer
C1260880 (UMLS CUI [1])
Code List
Runny nose (Rhinorrhoea)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Wheezing
integer
C0043144 (UMLS CUI [1])
Code List
Wheezing
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Shortness of breath
integer
C0013404 (UMLS CUI [1])
Code List
Shortness of breath
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Lower chest wall indrawing
integer
C0205076 (UMLS CUI [1,1])
C0425469 (UMLS CUI [1,2])
Code List
Lower chest wall indrawing
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Chest pain
integer
C0008031 (UMLS CUI [1])
Code List
Chest pain
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Conjunctivitis
integer
C0009763 (UMLS CUI [1])
Code List
Conjunctivitis
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Lymphadenopathy
integer
C0497156 (UMLS CUI [1])
Code List
Lymphadenopathy
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Headache
integer
C0018681 (UMLS CUI [1])
Code List
Headache
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Loss of smell (Anosmia)
integer
C0003126 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Loss of taste (Ageusia)
integer
C2364111 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Seizures
integer
C0036572 (UMLS CUI [1])
Code List
Seizures
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Fatigue / Malaise
integer
C0024528 (UMLS CUI [1])
Code List
Fatigue / Malaise
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Anorexia
integer
C0003123 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Altered consciousness/confusion
integer
C0150450 (UMLS CUI [1])
C0009676 (UMLS CUI [2])
Code List
Altered consciousness/confusion
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Muscle aches (Myalgia)
integer
C0231528 (UMLS CUI [1])
Code List
Muscle aches (Myalgia)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Joint pain (Arthralgia)
integer
C0003862 (UMLS CUI [1])
Code List
Joint pain (Arthralgia)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Inability to walk
integer
C0560046 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Abdominal pain
integer
C0000737 (UMLS CUI [1])
Code List
Abdominal pain
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Diarrhoea
integer
C0011991 (UMLS CUI [1])
Code List
Diarrhoea
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Vomiting / Nausea
integer
C0027497 (UMLS CUI [1])
C0042963 (UMLS CUI [2])
Code List
Vomiting / Nausea
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Skin rash
integer
C0015230 (UMLS CUI [1])
Code List
Skin rash
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Bleeding (Haemorrhage)
integer
C0019080 (UMLS CUI [1])
Code List
Bleeding (Haemorrhage)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Haemorrhage Site
Item
If Bleeding: specify site(s):
text
C0019080 (UMLS CUI [1,1])
C1515974 (UMLS CUI [1,2])
Item
Other symptom(s)
integer
C1457887 (UMLS CUI [1,1])
C0205394 (UMLS CUI [1,2])
Code List
Other symptom(s)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Other symptom(s)
Item
If YES, specify:
text
C1457887 (UMLS CUI [1,1])
C0205394 (UMLS CUI [1,2])
Item Group
Pre-admission medication (taken within 14 days of admission/presentation at healthcare facility)
C0559269 (UMLS CUI-1)
C0013227 (UMLS CUI-2)
C0332285 (UMLS CUI-3)
C5142984 (UMLS CUI-4)
Item
Angiotensin converting enzyme inhibitors (ACE inhibitors)
integer
C0003015 (UMLS CUI [1])
Code List
Angiotensin converting enzyme inhibitors (ACE inhibitors)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Angiotensin II receptor blockers (ARBs)
integer
C0521942 (UMLS CUI [1])
Code List
Angiotensin II receptor blockers (ARBs)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Non-steroidalanti-inflammatory(NSAIDs)
integer
C0003211 (UMLS CUI [1])
Code List
Non-steroidalanti-inflammatory(NSAIDs)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Oral steroids
integer
C0038317 (UMLS CUI [1,1])
C1527415 (UMLS CUI [1,2])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Oral steroids - Specification
Item
Oral steroids - If Yes, agent(s):
text
C0038317 (UMLS CUI [1,1])
C1527415 (UMLS CUI [1,2])
C2348235 (UMLS CUI [1,3])
Item
Other immunosuppressant agents (not oral steroids)
integer
C0021081 (UMLS CUI [1,1])
C0205394 (UMLS CUI [1,2])
Code List
Other immunosuppressant agents (not oral steroids)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Other immunosuppressant agents - Specification
Item
Other immunosuppressant agents (not oral steroids) - If Yes, agent(s):
text
C0021081 (UMLS CUI [1,1])
C0205394 (UMLS CUI [1,2])
C2348235 (UMLS CUI [1,3])
Item
Antivirals
integer
C0003451 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Antivirals - Specification
Item
Antivirals - If Yes, agent(s):
text
C0003451 (UMLS CUI [1,1])
C2348235 (UMLS CUI [1,2])
Item
Antibiotics
integer
C0003232 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Antibiotics - Specification
Item
Antibiotics - If Yes, agent(s):
text
C0003232 (UMLS CUI [1,1])
C2348235 (UMLS CUI [1,2])
Item
Other targeted COVID-19 Medications
integer
C0205394 (UMLS CUI [1,1])
C5203670 (UMLS CUI [1,2])
C0013227 (UMLS CUI [1,3])
Code List
Other targeted COVID-19 Medications
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Other targeted COVID-19 Medications - Specification
Item
Other targeted COVID-19 Medications - If Yes, agent(s):
text
C0205394 (UMLS CUI [1,1])
C5203670 (UMLS CUI [1,2])
C0013227 (UMLS CUI [1,3])
C2348235 (UMLS CUI [1,4])
Item Group
Co-morbidities and risk factors
C0009488 (UMLS CUI-1)
C0035648 (UMLS CUI-2)
Item
Chronic cardiac disease, including congenital heart disease (not hypertension)
integer
C1290386 (UMLS CUI [1])
Code List
Chronic cardiac disease, including congenital heart disease (not hypertension)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Hypertension
integer
C0020538 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Chronic pulmonary disease (not asthma)
integer
C0746102 (UMLS CUI [1,1])
C0332300 (UMLS CUI [1,2])
C0004096 (UMLS CUI [1,3])
Code List
Chronic pulmonary disease (not asthma)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Asthma (physician diagnosed)
integer
C0004096 (UMLS CUI [1])
Code List
Asthma (physician diagnosed)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Chronic kidney disease
integer
C1561643 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Moderate or severe liver disease
integer
C0023895 (UMLS CUI [1,1])
C0205081 (UMLS CUI [1,2])
C0205082 (UMLS CUI [2,1])
C0023895 (UMLS CUI [2,2])
Code List
Moderate or severe liver disease
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Mild liver disease
integer
C2945599 (UMLS CUI [1,1])
C0023895 (UMLS CUI [1,2])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Asplenia
integer
C3810472 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Chronic neurological disorder
integer
C0027765 (UMLS CUI [1,1])
C0008679 (UMLS CUI [1,2])
Code List
Chronic neurological disorder
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Malignant neoplasm
integer
C0006826 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Chronic hematologic disease
integer
C1275398 (UMLS CUI [1])
Code List
Chronic hematologic disease
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
AIDS / HIV
integer
C0019693 (UMLS CUI [1])
C0001175 (UMLS CUI [2])
Code List
AIDS / HIV
CL Item
Yes - on ART (1)
CL Item
Yes - not on ART (2)
CL Item
No (3)
CL Item
Unknown (4)
Item
Obesity (as defined by clinical staff)
integer
C0028754 (UMLS CUI [1])
Code List
Obesity (as defined by clinical staff)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Diabetes
integer
C0011849 (UMLS CUI [1])
Code List
Diabetes
CL Item
Yes - Type 1  (1)
CL Item
Yes - Type 2  (2)
CL Item
No (3)
CL Item
Unknown (4)
Item
Rheumatologic disorder
integer
C0035452 (UMLS CUI [1,1])
C0012634 (UMLS CUI [1,2])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Dementia
integer
C0497327 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Tuberculosis
integer
C0041296 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Malnutrition
integer
C0162429 (UMLS CUI [1])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Smoking
integer
C1519386 (UMLS CUI [1])
Code List
Smoking
CL Item
Yes (1)
CL Item
Never smoked (2)
CL Item
Former smoker (3)
CL Item
Unknown (4)
Item
Other relevant risk factor
integer
C0035648 (UMLS CUI [1,1])
C0205394 (UMLS CUI [1,2])
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Specification of relevant risk factor
Item
If other relevant risk factors are known, please specify:
text
C0035648 (UMLS CUI [1,1])
C0205394 (UMLS CUI [1,2])
C2348235 (UMLS CUI [1,3])

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