This sample attributes table contains sample ID, body site where sample was collected, analyte type, tumor status, histological type, tumor cell line, tumor location, tumor stage of sample, tumor grade of sample, tumor differentiation of sample, type of tumor treatment for sample and name of the center which conducted sequencing.

pht004422
Descripción

pht004422

Alias
UMLS CUI [1,1]
C3846158
Sample ID
Descripción

SAMPLE_ID

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1299222
Body site where sample was collected
Descripción

BODY SITE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Descripción

ANALYTE TYPE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Descripción

IS_TUMOR

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Descripción

HISTOLOGICAL TYPE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Primary tumor, metastasis, or transformed cell line
Descripción

PRIMARY_METASTATIC_TUMOR

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0677930
UMLS CUI [2,1]
C0027627
UMLS CUI [3,1]
C0007601
Primary tumor location
Descripción

PRIMARY TUMOR LOCATION

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0475447
Tumor stage of sample
Descripción

TUMOR_STAGE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1300072
Tumor grade of sample
Descripción

TUMOR_GRADE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0919553
Tumor differentiation of sample
Descripción

TUMOR_DIFFERENTIATION

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1511938
Type of tumor treatment for sample
Descripción

TUMOR_TREATMENT

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0332307
UMLS CUI [1,2]
C0027651
UMLS CUI [1,3]
C0087111
Name of the center which conducted sequencing
Descripción

SEQUENCING_CENTER

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C1561491

Similar models

This sample attributes table contains sample ID, body site where sample was collected, analyte type, tumor status, histological type, tumor cell line, tumor location, tumor stage of sample, tumor grade of sample, tumor differentiation of sample, type of tumor treatment for sample and name of the center which conducted sequencing.

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de datos
Alias
Item Group
pht004422
C3846158 (UMLS CUI [1,1])
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
Code List
Sample ID
CL Item
100T (100T)
CL Item
101T (101T)
CL Item
102N (102N)
CL Item
102T (102T)
CL Item
103T (103T)
CL Item
104N (104N)
CL Item
104T (104T)
CL Item
105T (105T)
CL Item
106T (106T)
CL Item
107T (107T)
CL Item
108N (108N)
CL Item
108T (108T)
CL Item
109T (109T)
CL Item
10N (10N)
CL Item
10T (10T)
CL Item
110N (110N)
CL Item
110T (110T)
CL Item
112N (112N)
CL Item
112T (112T)
CL Item
113T (113T)
CL Item
114T (114T)
CL Item
115N (115N)
CL Item
115T (115T)
CL Item
116N (116N)
CL Item
116T (116T)
CL Item
117N (117N)
CL Item
117T (117T)
CL Item
118T (118T)
CL Item
119N (119N)
CL Item
119T (119T)
CL Item
120N (120N)
CL Item
120T (120T)
CL Item
122T (122T)
CL Item
123N (123N)
CL Item
123T (123T)
CL Item
124N (124N)
CL Item
124T (124T)
CL Item
125N (125N)
CL Item
125T (125T)
CL Item
126N (126N)
CL Item
126T (126T)
CL Item
127N (127N)
CL Item
127T (127T)
CL Item
128N (128N)
CL Item
128T (128T)
CL Item
129N (129N)
CL Item
129T (129T)
CL Item
130N (130N)
CL Item
130T (130T)
CL Item
131N (131N)
CL Item
131T (131T)
CL Item
132T (132T)
CL Item
133N (133N)
CL Item
133T (133T)
CL Item
134N (134N)
CL Item
134T (134T)
CL Item
137T (137T)
CL Item
15N (15N)
CL Item
15T (15T)
CL Item
17N (17N)
CL Item
17T (17T)
CL Item
19T (19T)
CL Item
20T (20T)
CL Item
21T (21T)
CL Item
22N (22N)
CL Item
22T (22T)
CL Item
23N (23N)
CL Item
23T (23T)
CL Item
24N (24N)
CL Item
24T (24T)
CL Item
25T (25T)
CL Item
26N (26N)
CL Item
26T (26T)
CL Item
27T (27T)
CL Item
28N (28N)
CL Item
28T (28T)
CL Item
29N (29N)
CL Item
29T (29T)
CL Item
30N (30N)
CL Item
30T (30T)
CL Item
31N (31N)
CL Item
31T (31T)
CL Item
32N (32N)
CL Item
32T (32T)
CL Item
33N (33N)
CL Item
33T (33T)
CL Item
34N (34N)
CL Item
34T (34T)
CL Item
3N (3N)
CL Item
3T (3T)
CL Item
41T (41T)
CL Item
42T (42T)
CL Item
43N (43N)
CL Item
43T (43T)
CL Item
44N (44N)
CL Item
44T (44T)
CL Item
45T (45T)
CL Item
46N (46N)
CL Item
46T (46T)
CL Item
47N (47N)
CL Item
47T (47T)
CL Item
48T (48T)
CL Item
49T (49T)
CL Item
4N (4N)
CL Item
4T (4T)
CL Item
50T (50T)
CL Item
51N (51N)
CL Item
51T (51T)
CL Item
52N (52N)
CL Item
52T (52T)
CL Item
53N (53N)
CL Item
53T (53T)
CL Item
54T (54T)
CL Item
55T (55T)
CL Item
56N (56N)
CL Item
56T (56T)
CL Item
58N (58N)
CL Item
58T (58T)
CL Item
59N (59N)
CL Item
59T (59T)
CL Item
5T (5T)
CL Item
60N (60N)
CL Item
60T (60T)
CL Item
61T (61T)
CL Item
62N (62N)
CL Item
62T (62T)
CL Item
63N (63N)
CL Item
63T (63T)
CL Item
64N (64N)
CL Item
64T (64T)
CL Item
65T (65T)
CL Item
66N (66N)
CL Item
66T (66T)
CL Item
67T (67T)
CL Item
68T (68T)
CL Item
69N (69N)
CL Item
69T (69T)
CL Item
70T (70T)
CL Item
71N (71N)
CL Item
71T (71T)
CL Item
74T (74T)
CL Item
75T (75T)
CL Item
76N (76N)
CL Item
76T (76T)
CL Item
77N (77N)
CL Item
77T (77T)
CL Item
78N (78N)
CL Item
78T (78T)
CL Item
79N (79N)
CL Item
79T (79T)
CL Item
7T (7T)
CL Item
80T (80T)
CL Item
81T (81T)
CL Item
82N (82N)
CL Item
82T (82T)
CL Item
83N (83N)
CL Item
83T (83T)
CL Item
84N (84N)
CL Item
84T (84T)
CL Item
85N (85N)
CL Item
85T (85T)
CL Item
87N (87N)
CL Item
87T (87T)
CL Item
88N (88N)
CL Item
88T (88T)
CL Item
89N (89N)
CL Item
89T (89T)
CL Item
8N (8N)
CL Item
8T (8T)
CL Item
90T (90T)
CL Item
91T (91T)
CL Item
92T (92T)
CL Item
93N (93N)
CL Item
93T (93T)
CL Item
94T (94T)
CL Item
95T (95T)
CL Item
96T (96T)
CL Item
97N (97N)
CL Item
97T (97T)
CL Item
99T (99T)
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
Code List
Body site where sample was collected
CL Item
ATROPHIC ENDOMETRIUM (ATROPHIC ENDOMETRIUM)
CL Item
BLOOD (BLOOD)
CL Item
BODY OF UTERUS (BODY OF UTERUS)
CL Item
CERVIX UTERI (CERVIX UTERI)
CL Item
ENDOMETRIUM (ENDOMETRIUM)
CL Item
ENDOMETRIUM-MYOMETRIUM (ENDOMETRIUM-MYOMETRIUM)
CL Item
FALLOPIAN TUBE (FALLOPIAN TUBE)
CL Item
FAT (FAT)
CL Item
FAT AND MUSCLE (FAT AND MUSCLE)
CL Item
FIBROVASCULAR TISSUE (FIBROVASCULAR TISSUE)
CL Item
LYMPH NODE (LYMPH NODE)
CL Item
MUSCLE (MUSCLE)
CL Item
MYOMETRIUM (MYOMETRIUM)
CL Item
NORMAL ENDOMETRIUM (NORMAL ENDOMETRIUM)
CL Item
NORMAL ENDOMETRIUM-MYOMETRIUM (NORMAL ENDOMETRIUM-MYOMETRIUM)
CL Item
NORMAL FALLOPIAN (NORMAL FALLOPIAN)
CL Item
NORMAL MYOMETRIUM (NORMAL MYOMETRIUM)
CL Item
NORMAL UTERUS (NORMAL UTERUS)
CL Item
NOT GIVEN (NOT GIVEN)
CL Item
OMENTUM (OMENTUM)
CL Item
OVARY (OVARY)
CL Item
SMOOTH MUSCLE (SMOOTH MUSCLE)
CL Item
UTERUS (UTERUS)
CL Item
WHITE BLOOD CELLS (WHITE BLOOD CELLS)
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Code List
Analyte Type
CL Item
DNA (DNA)
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
Code List
Tumor status
CL Item
Is Tumor (Y)
C0027651 (UMLS CUI [1,1])
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
Code List
Cell or tissue type or subtype of sample
CL Item
Clear cell (Clear cell)
CL Item
Clear cell with signet ring features (Clear cell with signet ring features)
CL Item
Endometrioid (Endometrioid)
CL Item
Endometrioid_serous (Endometrioid_serous)
CL Item
N/A (N/A)
CL Item
Serous (Serous)
Item
Primary tumor, metastasis, or transformed cell line
string
C0677930 (UMLS CUI [1,1])
C0027627 (UMLS CUI [2,1])
C0007601 (UMLS CUI [3,1])
Code List
Primary tumor, metastasis, or transformed cell line
CL Item
N/A (N/A)
CL Item
PRIMARY (PRIMARY)
Item
Primary tumor location
string
C0475447 (UMLS CUI [1,1])
Code List
Primary tumor location
CL Item
ENDOMETRIUM (ENDOMETRIUM)
CL Item
N/A (N/A)
Item
Tumor stage of sample
string
C1300072 (UMLS CUI [1,1])
Code List
Tumor stage of sample
CL Item
I (I)
CL Item
IA (IA)
CL Item
IB (IB)
CL Item
IC (IC)
CL Item
IIA (IIA)
CL Item
IIB (IIB)
CL Item
III (III)
CL Item
IIIA (IIIA)
CL Item
IIIC (IIIC)
CL Item
IV (IV)
CL Item
IVB (IVB)
CL Item
N/A (N/A)
CL Item
T1BN0MX (T1BN0MX)
CL Item
T1BN1 (T1BN1)
CL Item
T1a(IA)N0M0 (T1a(IA)N0M0)
CL Item
T1aN0MX (T1aN0MX)
CL Item
T1aN0Mx (T1aN0Mx)
CL Item
T1b (T1b)
CL Item
T1b(1B)N0MX (T1b(1B)N0MX)
CL Item
T1b(IB)NXMX (T1b(IB)NXMX)
CL Item
T1bN0M0 (T1bN0M0)
CL Item
T1bNXM0 (T1bNXM0)
CL Item
T1bNXMX (T1bNXMX)
CL Item
T1c(IC)N0MX (T1c(IC)N0MX)
CL Item
T2b(IIB)N0M0 (T2b(IIB)N0M0)
CL Item
T3(IVB)NXM1 (T3(IVB)NXM1)
CL Item
T3a(IIIA) (T3a(IIIA))
CL Item
T3a(IIIA)N0M0 (T3a(IIIA)N0M0)
CL Item
T3a(IIIA)NXMX (T3a(IIIA)NXMX)
CL Item
T3aN1M1 (T3aN1M1)
CL Item
Unspecified (Unspecified)
CL Item
pT1a(1A)pN0pMX (pT1a(1A)pN0pMX)
CL Item
pT1a(1A)pNXpMX (pT1a(1A)pNXpMX)
CL Item
pT1a(IA)pN0pMX (pT1a(IA)pN0pMX)
CL Item
pT1aN0MX (pT1aN0MX)
CL Item
pT1apN0pMX (pT1apN0pMX)
CL Item
pT1apNXpMX (pT1apNXpMX)
CL Item
pT1b(IB)pN0pMX (pT1b(IB)pN0pMX)
CL Item
pT1b(IB)pNXpMX (pT1b(IB)pNXpMX)
CL Item
pT1bpN0M0 (pT1bpN0M0)
CL Item
pT1bpN0pMX (pT1bpN0pMX)
CL Item
pT1bpN1pMX (pT1bpN1pMX)
CL Item
pT1bpNXpMX (pT1bpNXpMX)
CL Item
pT1c(IC)pN0pMX (pT1c(IC)pN0pMX)
CL Item
pT1cpN0pMX (pT1cpN0pMX)
CL Item
pT2a(IIA)N0MX (pT2a(IIA)N0MX)
CL Item
pT2apN0pMX (pT2apN0pMX)
CL Item
pT2b(IIB)pN0pMX (pT2b(IIB)pN0pMX)
CL Item
pT2b(IIIC)N1MX (pT2b(IIIC)N1MX)
CL Item
pT2bpN0pMX (pT2bpN0pMX)
CL Item
pT3(IIIA)N0MX (pT3(IIIA)N0MX)
CL Item
pT3a(IIIA)N0MX (pT3a(IIIA)N0MX)
CL Item
pT3a(IIIA)pNXM0 (pT3a(IIIA)pNXM0)
CL Item
pT3a(IVB)NXM1 (pT3a(IVB)NXM1)
CL Item
pT3apN0pMX (pT3apN0pMX)
CL Item
pT3cN1M1 (pT3cN1M1)
CL Item
pT3cpN1pMX (pT3cpN1pMX)
Item
Tumor grade of sample
string
C0919553 (UMLS CUI [1,1])
Code List
Tumor grade of sample
CL Item
G1 (G1)
CL Item
G2 (G2)
CL Item
G3 (G3)
CL Item
High (High)
CL Item
N/A (N/A)
CL Item
Unspecified (Unspecified)
Item
Tumor differentiation of sample
string
C1511938 (UMLS CUI [1,1])
Code List
Tumor differentiation of sample
CL Item
Moderate (Moderate)
CL Item
Moderate-Poor (Moderate-Poor)
CL Item
Moderate-poor (Moderate-poor)
CL Item
N/A (N/A)
CL Item
Poor (Poor)
CL Item
Unspecified (Unspecified)
CL Item
Well (Well)
Item
Type of tumor treatment for sample
string
C0332307 (UMLS CUI [1,1])
C0027651 (UMLS CUI [1,2])
C0087111 (UMLS CUI [1,3])
Code List
Type of tumor treatment for sample
CL Item
N/A (N/A)
CL Item
Unknown (Unknown)
Item
Name of the center which conducted sequencing
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
Code List
Name of the center which conducted sequencing
CL Item
NHGRI_BELL_LABORATORY (NHGRI_BELL_LABORATORY)
CL Item
NHGRI_NISC_BELL_LABORATORY (NHGRI_NISC_BELL_LABORATORY)