Anglais

This sample attributes table contains sample IDs, visit, postmenstrual ages at time of nsasal or rectal swab sampling, day of life of the nasal or rectal tests, body site, read counts, analyte type, tumor status, histological type, region of bacteria being sequenced, presence of bacteria or virus (Adenovirus, Bocavirus, Bordetella pertussis, Coronavirus 1-4, Chlamydophila pneumoniae, Enterobacteriaceae, Flu A, Flu B, Haemophilus influenzae, Human metapneumovirus, Moraxella, Mycoplasma hominis, Mycoplasma pneumoniae, parechovirus, PIV 1-3, Rhinovirus, RSV, Streptococcus pneumoniae, and Ureaplasma) within the sample, corresponding bacteria or virus classification, hospital admissions, due to wheezing or breathing problems, admitted to intensive care, admissions due to RSV, sick visits, sick visits due to wheezing or breathing problems or wheezing unknown, has baby chest sounded wheezy or whistling, occurred with or without colds, chest wheezy during daytime or nighttime, diagnosed with wheezing by doctor, cough without cold, coughing during daytime or nighttime, number of colds, breathing and heart rate monitor, oxygen therapy, CPAP or BIPAP, ventilator, trach or breathing tube, feeding tube in nose or stomach, other equipment used, is baby receiving breast milk, is baby receiving breast milk exclusively, did baby receive breast milk since last visit, for how many months did baby receive breast milk for more than half of feedings, does baby eat any non-milk foods, and what non-milk foods does baby eat.

5 Formulaires  
  1. StudyEvent: Prematurity Respiratory Outcomes Immune System and Microbiome Study
    1. Eligibility Criteria
    2. The subject consent file includes subject IDs, consent information, subject aliases, and study ID.
    3. This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    4. This subject phenotype table contains subject IDs, cohort, sex, ethnic, race, gestational ages at birth and discharge, birth mode, bronchopulmonary dysplasia status, persistent repiratory disease after one year, oxygen AUC (Area Under the ROC curve) at 7 and 14 days, days on 7 variables (oxygen, mechanical ventilation, high frequency ventilation, cpap, nasal cannula gt 1 lmp, any respiratory support, and nasal cannula), maximum mean airway pressure, last PMA and DOL on ETT for GT 2 days in a row, exposure to furry animals in the home, asthma, allergies and eczema within siblings, BMI of the mother at the time of delivery, chlorioamnionitis, season of birth, derived respiratory severity score, oxygen AUC for first 14 days of life, and difference between FIO2 weeks 1 and 2.
    5. This sample attributes table contains sample IDs, visit, postmenstrual ages at time of nsasal or rectal swab sampling, day of life of the nasal or rectal tests, body site, read counts, analyte type, tumor status, histological type, region of bacteria being sequenced, presence of bacteria or virus (Adenovirus, Bocavirus, Bordetella pertussis, Coronavirus 1-4, Chlamydophila pneumoniae, Enterobacteriaceae, Flu A, Flu B, Haemophilus influenzae, Human metapneumovirus, Moraxella, Mycoplasma hominis, Mycoplasma pneumoniae, parechovirus, PIV 1-3, Rhinovirus, RSV, Streptococcus pneumoniae, and Ureaplasma) within the sample, corresponding bacteria or virus classification, hospital admissions, due to wheezing or breathing problems, admitted to intensive care, admissions due to RSV, sick visits, sick visits due to wheezing or breathing problems or wheezing unknown, has baby chest sounded wheezy or whistling, occurred with or without colds, chest wheezy during daytime or nighttime, diagnosed with wheezing by doctor, cough without cold, coughing during daytime or nighttime, number of colds, breathing and heart rate monitor, oxygen therapy, CPAP or BIPAP, ventilator, trach or breathing tube, feeding tube in nose or stomach, other equipment used, is baby receiving breast milk, is baby receiving breast milk exclusively, did baby receive breast milk since last visit, for how many months did baby receive breast milk for more than half of feedings, does baby eat any non-milk foods, and what non-milk foods does baby eat.
pht006797
Description

pht006797

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Description

SAMPLE_ID

Type de données

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Label describing the purpose of the visit
Description

Visit

Type de données

string

Alias
UMLS CUI [1,1]
C1704447
Body site where sample was collected
Description

BODY_SITE

Type de données

string

Alias
UMLS CUI [1,1]
C0449705
Cell or tissue type or subtype of sample
Description

HISTOLOGICAL_TYPE

Type de données

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Analyte Type
Description

ANALYTE_TYPE

Type de données

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Description

IS_TUMOR

Type de données

text

Alias
UMLS CUI [1,1]
C0475752
Region of bacteria being sequenced
Description

Region_16S

Type de données

string

Alias
UMLS CUI [1,1]
C0004611
UMLS CUI [1,2]
C0205147
UMLS CUI [1,3]
C1519249
Number of reads measured in the sample
Description

OTU_ReadCount

Type de données

text

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0242485
UMLS CUI [1,3]
C0237753
Postmenstrual Age (weeks) at time of nasal swab sampling
Description

nasalCGA

Type de données

float

Alias
UMLS CUI [1,1]
C3828508
UMLS CUI [1,2]
C3669207
Day of life of the nasal test
Description

nasalDol

Type de données

text

Alias
UMLS CUI [1,1]
C3669207
UMLS CUI [1,2]
C5401457
Postmenstrual Age (weeks) at time of rectal swab sampling
Description

rectalCGA

Type de données

float

Alias
UMLS CUI [1,1]
C3828508
UMLS CUI [1,2]
C0444215
Day of life of the rectal test
Description

rectalDol

Type de données

text

Alias
UMLS CUI [1,1]
C0444215
UMLS CUI [1,2]
C5401457
Presence of Adenovirus within the sample
Description

Adeno

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C0001483
UMLS CUI [1,3]
C2347026
Hardcoded to virus, needed for analysis
Description

Adeno classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0001483
UMLS CUI [1,3]
C0936012
Presence of Bocavirus within the sample
Description

Boca

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C1641393
Hardcoded to virus, needed for analysis
Description

Boca classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C1641393
Presence of Bordetella pertussis within the sample
Description

B. pert

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0006017
Hardcoded to bacteria needed for analysis
Description

B. pert classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0006017
Presence of Coronavirus 1 within the sample
Description

Corona 1

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0332307
UMLS CUI [1,4]
C0206422
UMLS CUI [1,5]
C0205447
Hardcoded to virus, needed for analysis
Description

Corona 1 classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205447
Presence of Coronavirus 2 within the sample
Description

Corona 2

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205448
Hardcoded to virus, needed for analysis
Description

Corona 2 classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205448
Presence of Coronavirus 3 within the sample
Description

Corona 3

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205449
Hardcoded to virus, needed for analysis
Description

Corona 3 classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205449
Presence of Coronavirus 4 within the sample
Description

Corona 4

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205450
Hardcoded to virus, needed for analysis
Description

Corona 4 classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205450
Presence of Chlamydophila pneumoniae within the sample
Description

C. pneu

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0887972
Hardcoded to bacteria needed for analysis
Description

C. pneu classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0887972
Presence of Enterobacteriaceae within the sample
Description

Entero XL

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0014346
Hardcoded to bacteria needed for analysis
Description

Entero XL classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0014346
Presence of Flu A within the sample
Description

Flu A

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0029347
Hardcoded to virus, needed for analysis
Description

Flu A classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0029347
Presence of Flu B within the sample
Description

Flu B

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0029348
Hardcoded to virus, needed for analysis
Description

Flu B classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0029348
Presence of Haemophilus influenzae within the sample
Description

H. influ

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0018483
Hardcoded to bacteria needed for analysis
Description

H. influ classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0018483
Presence of Human metapneumovirus within the sample
Description

hMPV

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0949907
Hardcoded to virus, needed for analysis
Description

hMPV classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0949907
Presence of Mycoplasma hominis within the sample
Description

M. hom

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0317838
Hardcoded to bacteria needed for analysis
Description

M. hom classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0317838
Presence of Mycoplasma pneumoniae within the sample
Description

M. pneu

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0026941
Hardcoded to bacteria needed for analysis
Description

M. pneu classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0026941
Presence of parechovirus within the sample
Description

Parecho

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0950102
Hardcoded to virus, needed for analysis
Description

Parecho classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0950102
Presence of PIV 1 within the sample
Description

PIV 1

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0600289
Hardcoded to virus, needed for analysis
Description

PIV 1 classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0600289
Presence of PIV 2 within the sample
Description

PIV 2

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0030391
Hardcoded to virus, needed for analysis
Description

PIV 2 classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0030391
Presence of PIV 3 within the sample
Description

PIV 3

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0030392
Hardcoded to virus, needed for analysis
Description

PIV 3 classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0030392
Presence of Rhinovirus within the sample
Description

Rhino

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0035473
Hardcoded to bacteria needed for analysis
Description

Rhino classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0035473
Presence of RSV within the sample
Description

RSV

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0035236
Hardcoded to virus, needed for analysis
Description

RSV classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0035236
Presence of Streptococcus pneumoniae within the sample
Description

S. pneu

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0038410
Hardcoded to virus, needed for analysis
Description

S. pneu classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0038410
Presence of Ureaplasma within the sample
Description

Urea

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0041944
Hardcoded to bacteria needed for analysis
Description

Urea classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0041944
Number hospital admissions
Description

huadmit

Type de données

float

Alias
UMLS CUI [1,1]
C1265611
UMLS CUI [1,2]
C0184666
Due to wheezing or breathing problems
Description

huwheeze

Type de données

float

Alias
UMLS CUI [1,1]
C0678226
UMLS CUI [1,2]
C0043144
UMLS CUI [2,1]
C0678226
UMLS CUI [2,2]
C3641913
Admitted to intensive care
Description

huicu

Type de données

string

Alias
UMLS CUI [1,1]
C0583239
Admissions due to RSV
Description

hursv

Type de données

string

Alias
UMLS CUI [1,1]
C0184666
UMLS CUI [1,2]
C0678226
UMLS CUI [1,3]
C0035236
Sick visits
Description

huervt

Type de données

float

Alias
UMLS CUI [1,1]
C2010702
UMLS CUI [1,2]
C0545082
Sick visits unknown
Description

huervtunk

Type de données

string

Alias
UMLS CUI [1,1]
C2010702
UMLS CUI [1,2]
C0545082
UMLS CUI [1,3]
C0439673
Sick visits due to wheezing or breathing problems
Description

huerwz

Type de données

float

Alias
UMLS CUI [1,1]
C2010702
UMLS CUI [1,2]
C0545082
UMLS CUI [1,3]
C0678226
UMLS CUI [1,4]
C0043144
UMLS CUI [2,1]
C2010702
UMLS CUI [2,2]
C0545082
UMLS CUI [2,3]
C0678226
UMLS CUI [2,4]
C3641913
Sick visits due to wheezing unk
Description

huerwzunk

Type de données

string

Alias
UMLS CUI [1,1]
C2010702
UMLS CUI [1,2]
C0545082
UMLS CUI [1,3]
C0678226
UMLS CUI [1,4]
C0043144
UMLS CUI [1,5]
C0439673
Has baby chest sounded wheezy or whistling
Description

sswheeze

Type de données

string

Alias
UMLS CUI [1,1]
C0021270
UMLS CUI [1,2]
C0817096
UMLS CUI [1,3]
C0043144
UMLS CUI [2,1]
C0021270
UMLS CUI [2,2]
C0817096
UMLS CUI [2,3]
C0425483
Occurred with colds
Description

sscold

Type de données

string

Alias
UMLS CUI [1,1]
C2745955
UMLS CUI [1,2]
C0009443
Occurred apart from colds
Description

ssacold

Type de données

string

Alias
UMLS CUI [1,1]
C2745955
UMLS CUI [1,2]
C1705847
UMLS CUI [1,3]
C0009443
Chest wheezy during daytime
Description

sswday

Type de données

string

Alias
UMLS CUI [1,1]
C0817096
UMLS CUI [1,2]
C0043144
UMLS CUI [1,3]
C0332169
Chest wheezy during nighttime
Description

sswnight

Type de données

string

Alias
UMLS CUI [1,1]
C0817096
UMLS CUI [1,2]
C0043144
UMLS CUI [1,3]
C0240526
Diagnosed with wheezing by doctor
Description

ssdxw

Type de données

string

Alias
UMLS CUI [1,1]
C0031831
UMLS CUI [1,2]
C0011900
UMLS CUI [1,3]
C0043144
Cough without cold
Description

sscough

Type de données

string

Alias
UMLS CUI [1,1]
C0010200
UMLS CUI [1,2]
C0332288
UMLS CUI [1,3]
C0009443
Coughing during daytime
Description

sscday

Type de données

string

Alias
UMLS CUI [1,1]
C0010200
UMLS CUI [1,2]
C0332169
Coughing during nighttime
Description

sscnight

Type de données

string

Alias
UMLS CUI [1,1]
C0010200
UMLS CUI [1,2]
C0240526
Number of colds
Description

sshcold

Type de données

float

Alias
UMLS CUI [1,1]
C1265611
UMLS CUI [1,2]
C0009443
Breathing and Heart Rate Monitor
Description

qsmonitor

Type de données

string

Alias
UMLS CUI [1,1]
C4551528
UMLS CUI [2,1]
C0513707
Oxygen Therapy
Description

qsoxygen_fup

Type de données

string

Alias
UMLS CUI [1,1]
C0184633
CPAP or BIPAP
Description

qscpaphome

Type de données

string

Alias
UMLS CUI [1,1]
C0199451
UMLS CUI [2,1]
C1956423
Ventilator
Description

qsventhome

Type de données

string

Alias
UMLS CUI [1,1]
C0087153
Trach or breathing tube
Description

qstrachfup

Type de données

string

Alias
UMLS CUI [1,1]
C0184106
Feeding tube in nose
Description

qsngtb

Type de données

string

Alias
UMLS CUI [1,1]
C0192456
Feeding tube in stomach
Description

qsgastro

Type de données

string

Alias
UMLS CUI [1,1]
C0349717
Other equipment used
Description

qsoths

Type de données

string

Alias
UMLS CUI [1,1]
C0205394
UMLS CUI [1,2]
C0014672
Describe other equipment
Description

qothtechs

Type de données

string

Alias
UMLS CUI [1,1]
C0205394
UMLS CUI [1,2]
C0014672
UMLS CUI [1,3]
C0678257
Is baby receiving breast milk
Description

fup1_bmilk

Type de données

string

Alias
UMLS CUI [1,1]
C0006147
Is baby receiving breast milk exclusively
Description

fup1_bmilk_excl

Type de données

string

Alias
UMLS CUI [1,1]
C0006147
UMLS CUI [1,2]
C1548966
Did baby receive breast milk since last visit
Description

dymilkhome1

Type de données

string

Alias
UMLS CUI [1,1]
C0006147
UMLS CUI [1,2]
C1711239
UMLS CUI [1,3]
C1517741
UMLS CUI [1,4]
C0545082
For how many months did baby receive breast milk for more than half of feedings
Description

dyfeedhome1

Type de données

string

Alias
UMLS CUI [1,1]
C0040223
UMLS CUI [1,2]
C0006147
UMLS CUI [1,3]
C5549115
UMLS CUI [1,4]
C2148613
Does baby eat any non-milk foods
Description

fup1_nonmilk

Type de données

string

Alias
UMLS CUI [1,1]
C2148613
UMLS CUI [1,2]
C0205394
UMLS CUI [1,3]
C0006147
What non-milk foods does baby eat
Description

fup1_nonmilk_log

Type de données

string

Alias
UMLS CUI [1,1]
C0016452
UMLS CUI [1,2]
C2348235
UMLS CUI [1,3]
C0205394
UMLS CUI [1,4]
C0006147
Hardcoded to bacteria needed for analysis
Description

Moraxella classification

Type de données

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0026536
Presence of Moraxella within the sample
Description

Moraxella

Type de données

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0026536
Number of reads measured in the sample within the PRISM2 study
Description

OTU_ReadCount2

Type de données

text

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0242485
UMLS CUI [1,3]
C0237753
UMLS CUI [1,4]
C0332285
UMLS CUI [1,5]
C0008976
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Similar models

This sample attributes table contains sample IDs, visit, postmenstrual ages at time of nsasal or rectal swab sampling, day of life of the nasal or rectal tests, body site, read counts, analyte type, tumor status, histological type, region of bacteria being sequenced, presence of bacteria or virus (Adenovirus, Bocavirus, Bordetella pertussis, Coronavirus 1-4, Chlamydophila pneumoniae, Enterobacteriaceae, Flu A, Flu B, Haemophilus influenzae, Human metapneumovirus, Moraxella, Mycoplasma hominis, Mycoplasma pneumoniae, parechovirus, PIV 1-3, Rhinovirus, RSV, Streptococcus pneumoniae, and Ureaplasma) within the sample, corresponding bacteria or virus classification, hospital admissions, due to wheezing or breathing problems, admitted to intensive care, admissions due to RSV, sick visits, sick visits due to wheezing or breathing problems or wheezing unknown, has baby chest sounded wheezy or whistling, occurred with or without colds, chest wheezy during daytime or nighttime, diagnosed with wheezing by doctor, cough without cold, coughing during daytime or nighttime, number of colds, breathing and heart rate monitor, oxygen therapy, CPAP or BIPAP, ventilator, trach or breathing tube, feeding tube in nose or stomach, other equipment used, is baby receiving breast milk, is baby receiving breast milk exclusively, did baby receive breast milk since last visit, for how many months did baby receive breast milk for more than half of feedings, does baby eat any non-milk foods, and what non-milk foods does baby eat.

5 Formulaires
  1. StudyEvent: Prematurity Respiratory Outcomes Immune System and Microbiome Study
    1. Eligibility Criteria
    2. The subject consent file includes subject IDs, consent information, subject aliases, and study ID.
    3. This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    4. This subject phenotype table contains subject IDs, cohort, sex, ethnic, race, gestational ages at birth and discharge, birth mode, bronchopulmonary dysplasia status, persistent repiratory disease after one year, oxygen AUC (Area Under the ROC curve) at 7 and 14 days, days on 7 variables (oxygen, mechanical ventilation, high frequency ventilation, cpap, nasal cannula gt 1 lmp, any respiratory support, and nasal cannula), maximum mean airway pressure, last PMA and DOL on ETT for GT 2 days in a row, exposure to furry animals in the home, asthma, allergies and eczema within siblings, BMI of the mother at the time of delivery, chlorioamnionitis, season of birth, derived respiratory severity score, oxygen AUC for first 14 days of life, and difference between FIO2 weeks 1 and 2.
    5. This sample attributes table contains sample IDs, visit, postmenstrual ages at time of nsasal or rectal swab sampling, day of life of the nasal or rectal tests, body site, read counts, analyte type, tumor status, histological type, region of bacteria being sequenced, presence of bacteria or virus (Adenovirus, Bocavirus, Bordetella pertussis, Coronavirus 1-4, Chlamydophila pneumoniae, Enterobacteriaceae, Flu A, Flu B, Haemophilus influenzae, Human metapneumovirus, Moraxella, Mycoplasma hominis, Mycoplasma pneumoniae, parechovirus, PIV 1-3, Rhinovirus, RSV, Streptococcus pneumoniae, and Ureaplasma) within the sample, corresponding bacteria or virus classification, hospital admissions, due to wheezing or breathing problems, admitted to intensive care, admissions due to RSV, sick visits, sick visits due to wheezing or breathing problems or wheezing unknown, has baby chest sounded wheezy or whistling, occurred with or without colds, chest wheezy during daytime or nighttime, diagnosed with wheezing by doctor, cough without cold, coughing during daytime or nighttime, number of colds, breathing and heart rate monitor, oxygen therapy, CPAP or BIPAP, ventilator, trach or breathing tube, feeding tube in nose or stomach, other equipment used, is baby receiving breast milk, is baby receiving breast milk exclusively, did baby receive breast milk since last visit, for how many months did baby receive breast milk for more than half of feedings, does baby eat any non-milk foods, and what non-milk foods does baby eat.
Name
Type
Description | Question | Decode (Coded Value)
Type de données
Alias
Item Group
pht006797
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
Visit
Item
Label describing the purpose of the visit
string
C1704447 (UMLS CUI [1,1])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (TRUE)
C0027651 (UMLS CUI [1,1])
Region_16S
Item
Region of bacteria being sequenced
string
C0004611 (UMLS CUI [1,1])
C0205147 (UMLS CUI [1,2])
C1519249 (UMLS CUI [1,3])
OTU_ReadCount
Item
Number of reads measured in the sample
text
C2347026 (UMLS CUI [1,1])
C0242485 (UMLS CUI [1,2])
C0237753 (UMLS CUI [1,3])
nasalCGA
Item
Postmenstrual Age (weeks) at time of nasal swab sampling
float
C3828508 (UMLS CUI [1,1])
C3669207 (UMLS CUI [1,2])
nasalDol
Item
Day of life of the nasal test
text
C3669207 (UMLS CUI [1,1])
C5401457 (UMLS CUI [1,2])
rectalCGA
Item
Postmenstrual Age (weeks) at time of rectal swab sampling
float
C3828508 (UMLS CUI [1,1])
C0444215 (UMLS CUI [1,2])
rectalDol
Item
Day of life of the rectal test
text
C0444215 (UMLS CUI [1,1])
C5401457 (UMLS CUI [1,2])
Item
Presence of Adenovirus within the sample
text
C3854307 (UMLS CUI [1,1])
C0001483 (UMLS CUI [1,2])
C2347026 (UMLS CUI [1,3])
Adeno
Code List
Presence of Adenovirus within the sample
CL Item
no (0)
CL Item
yes (1)
Adeno classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0001483 (UMLS CUI [1,2])
C0936012 (UMLS CUI [1,3])
Item
Presence of Bocavirus within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C1641393 (UMLS CUI [1,3])
Boca
Code List
Presence of Bocavirus within the sample
CL Item
no (0)
CL Item
yes (1)
Boca classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C1641393 (UMLS CUI [1,3])
Item
Presence of Bordetella pertussis within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0006017 (UMLS CUI [1,3])
B. pert
Code List
Presence of Bordetella pertussis within the sample
CL Item
no (0)
CL Item
yes (1)
B. pert classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0006017 (UMLS CUI [1,3])
Item
Presence of Coronavirus 1 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C0206422 (UMLS CUI [1,4])
C0205447 (UMLS CUI [1,5])
Corona 1
Code List
Presence of Coronavirus 1 within the sample
CL Item
no (0)
CL Item
yes (1)
Corona 1 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205447 (UMLS CUI [1,5])
Item
Presence of Coronavirus 2 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205448 (UMLS CUI [1,5])
Corona 2
Code List
Presence of Coronavirus 2 within the sample
CL Item
no (0)
CL Item
yes (1)
Corona 2 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205448 (UMLS CUI [1,5])
Item
Presence of Coronavirus 3 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205449 (UMLS CUI [1,5])
Corona 3
Code List
Presence of Coronavirus 3 within the sample
CL Item
no (0)
CL Item
yes (1)
Corona 3 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205449 (UMLS CUI [1,5])
Item
Presence of Coronavirus 4 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205450 (UMLS CUI [1,5])
Corona 4
Code List
Presence of Coronavirus 4 within the sample
CL Item
no (0)
CL Item
yes (1)
Corona 4 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205450 (UMLS CUI [1,5])
Item
Presence of Chlamydophila pneumoniae within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0887972 (UMLS CUI [1,3])
C. pneu
Code List
Presence of Chlamydophila pneumoniae within the sample
CL Item
no (0)
CL Item
yes (1)
C. pneu classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0887972 (UMLS CUI [1,3])
Item
Presence of Enterobacteriaceae within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0014346 (UMLS CUI [1,3])
Entero XL
Code List
Presence of Enterobacteriaceae within the sample
CL Item
no (0)
CL Item
yes (1)
Entero XL classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0014346 (UMLS CUI [1,3])
Item
Presence of Flu A within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0029347 (UMLS CUI [1,3])
Flu A
Code List
Presence of Flu A within the sample
CL Item
no (0)
CL Item
yes (1)
Flu A classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0029347 (UMLS CUI [1,3])
Item
Presence of Flu B within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0029348 (UMLS CUI [1,3])
Flu B
Code List
Presence of Flu B within the sample
CL Item
no (0)
CL Item
yes (1)
Flu B classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0029348 (UMLS CUI [1,3])
Item
Presence of Haemophilus influenzae within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0018483 (UMLS CUI [1,3])
H. influ
Code List
Presence of Haemophilus influenzae within the sample
CL Item
no (0)
CL Item
yes (1)
H. influ classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0018483 (UMLS CUI [1,3])
Item
Presence of Human metapneumovirus within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0949907 (UMLS CUI [1,3])
hMPV
Code List
Presence of Human metapneumovirus within the sample
CL Item
no (0)
CL Item
yes (1)
hMPV classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0949907 (UMLS CUI [1,3])
Item
Presence of Mycoplasma hominis within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0317838 (UMLS CUI [1,3])
M. hom
Code List
Presence of Mycoplasma hominis within the sample
CL Item
no (0)
CL Item
yes (1)
M. hom classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0317838 (UMLS CUI [1,3])
Item
Presence of Mycoplasma pneumoniae within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0026941 (UMLS CUI [1,3])
M. pneu
Code List
Presence of Mycoplasma pneumoniae within the sample
CL Item
no (0)
CL Item
yes (1)
M. pneu classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0026941 (UMLS CUI [1,3])
Item
Presence of parechovirus within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0950102 (UMLS CUI [1,3])
Parecho
Code List
Presence of parechovirus within the sample
CL Item
no (0)
CL Item
yes (1)
Parecho classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0950102 (UMLS CUI [1,3])
Item
Presence of PIV 1 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0600289 (UMLS CUI [1,3])
PIV 1
Code List
Presence of PIV 1 within the sample
CL Item
no (0)
CL Item
yes (1)
PIV 1 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0600289 (UMLS CUI [1,3])
Item
Presence of PIV 2 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0030391 (UMLS CUI [1,3])
PIV 2
Code List
Presence of PIV 2 within the sample
CL Item
no (0)
CL Item
yes (1)
PIV 2 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0030391 (UMLS CUI [1,3])
Item
Presence of PIV 3 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0030392 (UMLS CUI [1,3])
PIV 3
Code List
Presence of PIV 3 within the sample
CL Item
no (0)
CL Item
yes (1)
PIV 3 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0030392 (UMLS CUI [1,3])
Item
Presence of Rhinovirus within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0035473 (UMLS CUI [1,3])
Rhino
Code List
Presence of Rhinovirus within the sample
CL Item
no (0)
CL Item
yes (1)
Rhino classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0035473 (UMLS CUI [1,3])
Item
Presence of RSV within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0035236 (UMLS CUI [1,3])
RSV
Code List
Presence of RSV within the sample
CL Item
no (0)
CL Item
yes (1)
RSV classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0035236 (UMLS CUI [1,3])
Item
Presence of Streptococcus pneumoniae within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0038410 (UMLS CUI [1,3])
S. pneu
Code List
Presence of Streptococcus pneumoniae within the sample
CL Item
no (0)
CL Item
yes (1)
S. pneu classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0038410 (UMLS CUI [1,3])
Item
Presence of Ureaplasma within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0041944 (UMLS CUI [1,3])
Urea
Code List
Presence of Ureaplasma within the sample
CL Item
no (0)
CL Item
yes (1)
Urea classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0041944 (UMLS CUI [1,3])
huadmit
Item
Number hospital admissions
float
C1265611 (UMLS CUI [1,1])
C0184666 (UMLS CUI [1,2])
huwheeze
Item
Due to wheezing or breathing problems
float
C0678226 (UMLS CUI [1,1])
C0043144 (UMLS CUI [1,2])
C0678226 (UMLS CUI [2,1])
C3641913 (UMLS CUI [2,2])
huicu
Item
Admitted to intensive care
string
C0583239 (UMLS CUI [1,1])
hursv
Item
Admissions due to RSV
string
C0184666 (UMLS CUI [1,1])
C0678226 (UMLS CUI [1,2])
C0035236 (UMLS CUI [1,3])
huervt
Item
Sick visits
float
C2010702 (UMLS CUI [1,1])
C0545082 (UMLS CUI [1,2])
huervtunk
Item
Sick visits unknown
string
C2010702 (UMLS CUI [1,1])
C0545082 (UMLS CUI [1,2])
C0439673 (UMLS CUI [1,3])
huerwz
Item
Sick visits due to wheezing or breathing problems
float
C2010702 (UMLS CUI [1,1])
C0545082 (UMLS CUI [1,2])
C0678226 (UMLS CUI [1,3])
C0043144 (UMLS CUI [1,4])
C2010702 (UMLS CUI [2,1])
C0545082 (UMLS CUI [2,2])
C0678226 (UMLS CUI [2,3])
C3641913 (UMLS CUI [2,4])
huerwzunk
Item
Sick visits due to wheezing unk
string
C2010702 (UMLS CUI [1,1])
C0545082 (UMLS CUI [1,2])
C0678226 (UMLS CUI [1,3])
C0043144 (UMLS CUI [1,4])
C0439673 (UMLS CUI [1,5])
sswheeze
Item
Has baby chest sounded wheezy or whistling
string
C0021270 (UMLS CUI [1,1])
C0817096 (UMLS CUI [1,2])
C0043144 (UMLS CUI [1,3])
C0021270 (UMLS CUI [2,1])
C0817096 (UMLS CUI [2,2])
C0425483 (UMLS CUI [2,3])
sscold
Item
Occurred with colds
string
C2745955 (UMLS CUI [1,1])
C0009443 (UMLS CUI [1,2])
ssacold
Item
Occurred apart from colds
string
C2745955 (UMLS CUI [1,1])
C1705847 (UMLS CUI [1,2])
C0009443 (UMLS CUI [1,3])
sswday
Item
Chest wheezy during daytime
string
C0817096 (UMLS CUI [1,1])
C0043144 (UMLS CUI [1,2])
C0332169 (UMLS CUI [1,3])
sswnight
Item
Chest wheezy during nighttime
string
C0817096 (UMLS CUI [1,1])
C0043144 (UMLS CUI [1,2])
C0240526 (UMLS CUI [1,3])
ssdxw
Item
Diagnosed with wheezing by doctor
string
C0031831 (UMLS CUI [1,1])
C0011900 (UMLS CUI [1,2])
C0043144 (UMLS CUI [1,3])
sscough
Item
Cough without cold
string
C0010200 (UMLS CUI [1,1])
C0332288 (UMLS CUI [1,2])
C0009443 (UMLS CUI [1,3])
sscday
Item
Coughing during daytime
string
C0010200 (UMLS CUI [1,1])
C0332169 (UMLS CUI [1,2])
sscnight
Item
Coughing during nighttime
string
C0010200 (UMLS CUI [1,1])
C0240526 (UMLS CUI [1,2])
sshcold
Item
Number of colds
float
C1265611 (UMLS CUI [1,1])
C0009443 (UMLS CUI [1,2])
qsmonitor
Item
Breathing and Heart Rate Monitor
string
C4551528 (UMLS CUI [1,1])
C0513707 (UMLS CUI [2,1])
qsoxygen_fup
Item
Oxygen Therapy
string
C0184633 (UMLS CUI [1,1])
qscpaphome
Item
CPAP or BIPAP
string
C0199451 (UMLS CUI [1,1])
C1956423 (UMLS CUI [2,1])
qsventhome
Item
Ventilator
string
C0087153 (UMLS CUI [1,1])
qstrachfup
Item
Trach or breathing tube
string
C0184106 (UMLS CUI [1,1])
qsngtb
Item
Feeding tube in nose
string
C0192456 (UMLS CUI [1,1])
qsgastro
Item
Feeding tube in stomach
string
C0349717 (UMLS CUI [1,1])
qsoths
Item
Other equipment used
string
C0205394 (UMLS CUI [1,1])
C0014672 (UMLS CUI [1,2])
qothtechs
Item
Describe other equipment
string
C0205394 (UMLS CUI [1,1])
C0014672 (UMLS CUI [1,2])
C0678257 (UMLS CUI [1,3])
fup1_bmilk
Item
Is baby receiving breast milk
string
C0006147 (UMLS CUI [1,1])
fup1_bmilk_excl
Item
Is baby receiving breast milk exclusively
string
C0006147 (UMLS CUI [1,1])
C1548966 (UMLS CUI [1,2])
dymilkhome1
Item
Did baby receive breast milk since last visit
string
C0006147 (UMLS CUI [1,1])
C1711239 (UMLS CUI [1,2])
C1517741 (UMLS CUI [1,3])
C0545082 (UMLS CUI [1,4])
dyfeedhome1
Item
For how many months did baby receive breast milk for more than half of feedings
string
C0040223 (UMLS CUI [1,1])
C0006147 (UMLS CUI [1,2])
C5549115 (UMLS CUI [1,3])
C2148613 (UMLS CUI [1,4])
fup1_nonmilk
Item
Does baby eat any non-milk foods
string
C2148613 (UMLS CUI [1,1])
C0205394 (UMLS CUI [1,2])
C0006147 (UMLS CUI [1,3])
fup1_nonmilk_log
Item
What non-milk foods does baby eat
string
C0016452 (UMLS CUI [1,1])
C2348235 (UMLS CUI [1,2])
C0205394 (UMLS CUI [1,3])
C0006147 (UMLS CUI [1,4])
Moraxella classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0026536 (UMLS CUI [1,3])
Item
Presence of Moraxella within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0026536 (UMLS CUI [1,3])
Moraxella
Code List
Presence of Moraxella within the sample
CL Item
no (0)
CL Item
yes (1)
OTU_ReadCount2
Item
Number of reads measured in the sample within the PRISM2 study
text
C2347026 (UMLS CUI [1,1])
C0242485 (UMLS CUI [1,2])
C0237753 (UMLS CUI [1,3])
C0332285 (UMLS CUI [1,4])
C0008976 (UMLS CUI [1,5])
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