Englisch

This sample attributes table contains sample IDs, visit, postmenstrual ages at time of nsasal or rectal swab sampling, day of life of the nasal or rectal tests, body site, read counts, analyte type, tumor status, histological type, region of bacteria being sequenced, presence of bacteria or virus (Adenovirus, Bocavirus, Bordetella pertussis, Coronavirus 1-4, Chlamydophila pneumoniae, Enterobacteriaceae, Flu A, Flu B, Haemophilus influenzae, Human metapneumovirus, Moraxella, Mycoplasma hominis, Mycoplasma pneumoniae, parechovirus, PIV 1-3, Rhinovirus, RSV, Streptococcus pneumoniae, and Ureaplasma) within the sample, corresponding bacteria or virus classification, hospital admissions, due to wheezing or breathing problems, admitted to intensive care, admissions due to RSV, sick visits, sick visits due to wheezing or breathing problems or wheezing unknown, has baby chest sounded wheezy or whistling, occurred with or without colds, chest wheezy during daytime or nighttime, diagnosed with wheezing by doctor, cough without cold, coughing during daytime or nighttime, number of colds, breathing and heart rate monitor, oxygen therapy, CPAP or BIPAP, ventilator, trach or breathing tube, feeding tube in nose or stomach, other equipment used, is baby receiving breast milk, is baby receiving breast milk exclusively, did baby receive breast milk since last visit, for how many months did baby receive breast milk for more than half of feedings, does baby eat any non-milk foods, and what non-milk foods does baby eat.

5 Formulare  
  1. StudyEvent: Prematurity Respiratory Outcomes Immune System and Microbiome Study
    1. Eligibility Criteria
    2. The subject consent file includes subject IDs, consent information, subject aliases, and study ID.
    3. This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    4. This subject phenotype table contains subject IDs, cohort, sex, ethnic, race, gestational ages at birth and discharge, birth mode, bronchopulmonary dysplasia status, persistent repiratory disease after one year, oxygen AUC (Area Under the ROC curve) at 7 and 14 days, days on 7 variables (oxygen, mechanical ventilation, high frequency ventilation, cpap, nasal cannula gt 1 lmp, any respiratory support, and nasal cannula), maximum mean airway pressure, last PMA and DOL on ETT for GT 2 days in a row, exposure to furry animals in the home, asthma, allergies and eczema within siblings, BMI of the mother at the time of delivery, chlorioamnionitis, season of birth, derived respiratory severity score, oxygen AUC for first 14 days of life, and difference between FIO2 weeks 1 and 2.
    5. This sample attributes table contains sample IDs, visit, postmenstrual ages at time of nsasal or rectal swab sampling, day of life of the nasal or rectal tests, body site, read counts, analyte type, tumor status, histological type, region of bacteria being sequenced, presence of bacteria or virus (Adenovirus, Bocavirus, Bordetella pertussis, Coronavirus 1-4, Chlamydophila pneumoniae, Enterobacteriaceae, Flu A, Flu B, Haemophilus influenzae, Human metapneumovirus, Moraxella, Mycoplasma hominis, Mycoplasma pneumoniae, parechovirus, PIV 1-3, Rhinovirus, RSV, Streptococcus pneumoniae, and Ureaplasma) within the sample, corresponding bacteria or virus classification, hospital admissions, due to wheezing or breathing problems, admitted to intensive care, admissions due to RSV, sick visits, sick visits due to wheezing or breathing problems or wheezing unknown, has baby chest sounded wheezy or whistling, occurred with or without colds, chest wheezy during daytime or nighttime, diagnosed with wheezing by doctor, cough without cold, coughing during daytime or nighttime, number of colds, breathing and heart rate monitor, oxygen therapy, CPAP or BIPAP, ventilator, trach or breathing tube, feeding tube in nose or stomach, other equipment used, is baby receiving breast milk, is baby receiving breast milk exclusively, did baby receive breast milk since last visit, for how many months did baby receive breast milk for more than half of feedings, does baby eat any non-milk foods, and what non-milk foods does baby eat.
pht006797
Beschreibung

pht006797

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Beschreibung

SAMPLE_ID

Datentyp

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Label describing the purpose of the visit
Beschreibung

Visit

Datentyp

string

Alias
UMLS CUI [1,1]
C1704447
Body site where sample was collected
Beschreibung

BODY_SITE

Datentyp

string

Alias
UMLS CUI [1,1]
C0449705
Cell or tissue type or subtype of sample
Beschreibung

HISTOLOGICAL_TYPE

Datentyp

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Analyte Type
Beschreibung

ANALYTE_TYPE

Datentyp

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Beschreibung

IS_TUMOR

Datentyp

text

Alias
UMLS CUI [1,1]
C0475752
Region of bacteria being sequenced
Beschreibung

Region_16S

Datentyp

string

Alias
UMLS CUI [1,1]
C0004611
UMLS CUI [1,2]
C0205147
UMLS CUI [1,3]
C1519249
Number of reads measured in the sample
Beschreibung

OTU_ReadCount

Datentyp

text

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0242485
UMLS CUI [1,3]
C0237753
Postmenstrual Age (weeks) at time of nasal swab sampling
Beschreibung

nasalCGA

Datentyp

float

Alias
UMLS CUI [1,1]
C3828508
UMLS CUI [1,2]
C3669207
Day of life of the nasal test
Beschreibung

nasalDol

Datentyp

text

Alias
UMLS CUI [1,1]
C3669207
UMLS CUI [1,2]
C5401457
Postmenstrual Age (weeks) at time of rectal swab sampling
Beschreibung

rectalCGA

Datentyp

float

Alias
UMLS CUI [1,1]
C3828508
UMLS CUI [1,2]
C0444215
Day of life of the rectal test
Beschreibung

rectalDol

Datentyp

text

Alias
UMLS CUI [1,1]
C0444215
UMLS CUI [1,2]
C5401457
Presence of Adenovirus within the sample
Beschreibung

Adeno

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C0001483
UMLS CUI [1,3]
C2347026
Hardcoded to virus, needed for analysis
Beschreibung

Adeno classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0001483
UMLS CUI [1,3]
C0936012
Presence of Bocavirus within the sample
Beschreibung

Boca

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C1641393
Hardcoded to virus, needed for analysis
Beschreibung

Boca classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C1641393
Presence of Bordetella pertussis within the sample
Beschreibung

B. pert

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0006017
Hardcoded to bacteria needed for analysis
Beschreibung

B. pert classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0006017
Presence of Coronavirus 1 within the sample
Beschreibung

Corona 1

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0332307
UMLS CUI [1,4]
C0206422
UMLS CUI [1,5]
C0205447
Hardcoded to virus, needed for analysis
Beschreibung

Corona 1 classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205447
Presence of Coronavirus 2 within the sample
Beschreibung

Corona 2

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205448
Hardcoded to virus, needed for analysis
Beschreibung

Corona 2 classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205448
Presence of Coronavirus 3 within the sample
Beschreibung

Corona 3

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205449
Hardcoded to virus, needed for analysis
Beschreibung

Corona 3 classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205449
Presence of Coronavirus 4 within the sample
Beschreibung

Corona 4

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205450
Hardcoded to virus, needed for analysis
Beschreibung

Corona 4 classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0206422
UMLS CUI [1,4]
C0332307
UMLS CUI [1,5]
C0205450
Presence of Chlamydophila pneumoniae within the sample
Beschreibung

C. pneu

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0887972
Hardcoded to bacteria needed for analysis
Beschreibung

C. pneu classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0887972
Presence of Enterobacteriaceae within the sample
Beschreibung

Entero XL

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0014346
Hardcoded to bacteria needed for analysis
Beschreibung

Entero XL classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0014346
Presence of Flu A within the sample
Beschreibung

Flu A

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0029347
Hardcoded to virus, needed for analysis
Beschreibung

Flu A classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0029347
Presence of Flu B within the sample
Beschreibung

Flu B

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0029348
Hardcoded to virus, needed for analysis
Beschreibung

Flu B classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0029348
Presence of Haemophilus influenzae within the sample
Beschreibung

H. influ

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0018483
Hardcoded to bacteria needed for analysis
Beschreibung

H. influ classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0018483
Presence of Human metapneumovirus within the sample
Beschreibung

hMPV

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0949907
Hardcoded to virus, needed for analysis
Beschreibung

hMPV classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0949907
Presence of Mycoplasma hominis within the sample
Beschreibung

M. hom

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0317838
Hardcoded to bacteria needed for analysis
Beschreibung

M. hom classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0317838
Presence of Mycoplasma pneumoniae within the sample
Beschreibung

M. pneu

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0026941
Hardcoded to bacteria needed for analysis
Beschreibung

M. pneu classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0026941
Presence of parechovirus within the sample
Beschreibung

Parecho

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0950102
Hardcoded to virus, needed for analysis
Beschreibung

Parecho classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0950102
Presence of PIV 1 within the sample
Beschreibung

PIV 1

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0600289
Hardcoded to virus, needed for analysis
Beschreibung

PIV 1 classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0600289
Presence of PIV 2 within the sample
Beschreibung

PIV 2

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0030391
Hardcoded to virus, needed for analysis
Beschreibung

PIV 2 classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0030391
Presence of PIV 3 within the sample
Beschreibung

PIV 3

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0030392
Hardcoded to virus, needed for analysis
Beschreibung

PIV 3 classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0030392
Presence of Rhinovirus within the sample
Beschreibung

Rhino

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0035473
Hardcoded to bacteria needed for analysis
Beschreibung

Rhino classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0035473
Presence of RSV within the sample
Beschreibung

RSV

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0035236
Hardcoded to virus, needed for analysis
Beschreibung

RSV classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0035236
Presence of Streptococcus pneumoniae within the sample
Beschreibung

S. pneu

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0038410
Hardcoded to virus, needed for analysis
Beschreibung

S. pneu classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0038410
Presence of Ureaplasma within the sample
Beschreibung

Urea

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0041944
Hardcoded to bacteria needed for analysis
Beschreibung

Urea classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0041944
Number hospital admissions
Beschreibung

huadmit

Datentyp

float

Alias
UMLS CUI [1,1]
C1265611
UMLS CUI [1,2]
C0184666
Due to wheezing or breathing problems
Beschreibung

huwheeze

Datentyp

float

Alias
UMLS CUI [1,1]
C0678226
UMLS CUI [1,2]
C0043144
UMLS CUI [2,1]
C0678226
UMLS CUI [2,2]
C3641913
Admitted to intensive care
Beschreibung

huicu

Datentyp

string

Alias
UMLS CUI [1,1]
C0583239
Admissions due to RSV
Beschreibung

hursv

Datentyp

string

Alias
UMLS CUI [1,1]
C0184666
UMLS CUI [1,2]
C0678226
UMLS CUI [1,3]
C0035236
Sick visits
Beschreibung

huervt

Datentyp

float

Alias
UMLS CUI [1,1]
C2010702
UMLS CUI [1,2]
C0545082
Sick visits unknown
Beschreibung

huervtunk

Datentyp

string

Alias
UMLS CUI [1,1]
C2010702
UMLS CUI [1,2]
C0545082
UMLS CUI [1,3]
C0439673
Sick visits due to wheezing or breathing problems
Beschreibung

huerwz

Datentyp

float

Alias
UMLS CUI [1,1]
C2010702
UMLS CUI [1,2]
C0545082
UMLS CUI [1,3]
C0678226
UMLS CUI [1,4]
C0043144
UMLS CUI [2,1]
C2010702
UMLS CUI [2,2]
C0545082
UMLS CUI [2,3]
C0678226
UMLS CUI [2,4]
C3641913
Sick visits due to wheezing unk
Beschreibung

huerwzunk

Datentyp

string

Alias
UMLS CUI [1,1]
C2010702
UMLS CUI [1,2]
C0545082
UMLS CUI [1,3]
C0678226
UMLS CUI [1,4]
C0043144
UMLS CUI [1,5]
C0439673
Has baby chest sounded wheezy or whistling
Beschreibung

sswheeze

Datentyp

string

Alias
UMLS CUI [1,1]
C0021270
UMLS CUI [1,2]
C0817096
UMLS CUI [1,3]
C0043144
UMLS CUI [2,1]
C0021270
UMLS CUI [2,2]
C0817096
UMLS CUI [2,3]
C0425483
Occurred with colds
Beschreibung

sscold

Datentyp

string

Alias
UMLS CUI [1,1]
C2745955
UMLS CUI [1,2]
C0009443
Occurred apart from colds
Beschreibung

ssacold

Datentyp

string

Alias
UMLS CUI [1,1]
C2745955
UMLS CUI [1,2]
C1705847
UMLS CUI [1,3]
C0009443
Chest wheezy during daytime
Beschreibung

sswday

Datentyp

string

Alias
UMLS CUI [1,1]
C0817096
UMLS CUI [1,2]
C0043144
UMLS CUI [1,3]
C0332169
Chest wheezy during nighttime
Beschreibung

sswnight

Datentyp

string

Alias
UMLS CUI [1,1]
C0817096
UMLS CUI [1,2]
C0043144
UMLS CUI [1,3]
C0240526
Diagnosed with wheezing by doctor
Beschreibung

ssdxw

Datentyp

string

Alias
UMLS CUI [1,1]
C0031831
UMLS CUI [1,2]
C0011900
UMLS CUI [1,3]
C0043144
Cough without cold
Beschreibung

sscough

Datentyp

string

Alias
UMLS CUI [1,1]
C0010200
UMLS CUI [1,2]
C0332288
UMLS CUI [1,3]
C0009443
Coughing during daytime
Beschreibung

sscday

Datentyp

string

Alias
UMLS CUI [1,1]
C0010200
UMLS CUI [1,2]
C0332169
Coughing during nighttime
Beschreibung

sscnight

Datentyp

string

Alias
UMLS CUI [1,1]
C0010200
UMLS CUI [1,2]
C0240526
Number of colds
Beschreibung

sshcold

Datentyp

float

Alias
UMLS CUI [1,1]
C1265611
UMLS CUI [1,2]
C0009443
Breathing and Heart Rate Monitor
Beschreibung

qsmonitor

Datentyp

string

Alias
UMLS CUI [1,1]
C4551528
UMLS CUI [2,1]
C0513707
Oxygen Therapy
Beschreibung

qsoxygen_fup

Datentyp

string

Alias
UMLS CUI [1,1]
C0184633
CPAP or BIPAP
Beschreibung

qscpaphome

Datentyp

string

Alias
UMLS CUI [1,1]
C0199451
UMLS CUI [2,1]
C1956423
Ventilator
Beschreibung

qsventhome

Datentyp

string

Alias
UMLS CUI [1,1]
C0087153
Trach or breathing tube
Beschreibung

qstrachfup

Datentyp

string

Alias
UMLS CUI [1,1]
C0184106
Feeding tube in nose
Beschreibung

qsngtb

Datentyp

string

Alias
UMLS CUI [1,1]
C0192456
Feeding tube in stomach
Beschreibung

qsgastro

Datentyp

string

Alias
UMLS CUI [1,1]
C0349717
Other equipment used
Beschreibung

qsoths

Datentyp

string

Alias
UMLS CUI [1,1]
C0205394
UMLS CUI [1,2]
C0014672
Describe other equipment
Beschreibung

qothtechs

Datentyp

string

Alias
UMLS CUI [1,1]
C0205394
UMLS CUI [1,2]
C0014672
UMLS CUI [1,3]
C0678257
Is baby receiving breast milk
Beschreibung

fup1_bmilk

Datentyp

string

Alias
UMLS CUI [1,1]
C0006147
Is baby receiving breast milk exclusively
Beschreibung

fup1_bmilk_excl

Datentyp

string

Alias
UMLS CUI [1,1]
C0006147
UMLS CUI [1,2]
C1548966
Did baby receive breast milk since last visit
Beschreibung

dymilkhome1

Datentyp

string

Alias
UMLS CUI [1,1]
C0006147
UMLS CUI [1,2]
C1711239
UMLS CUI [1,3]
C1517741
UMLS CUI [1,4]
C0545082
For how many months did baby receive breast milk for more than half of feedings
Beschreibung

dyfeedhome1

Datentyp

string

Alias
UMLS CUI [1,1]
C0040223
UMLS CUI [1,2]
C0006147
UMLS CUI [1,3]
C5549115
UMLS CUI [1,4]
C2148613
Does baby eat any non-milk foods
Beschreibung

fup1_nonmilk

Datentyp

string

Alias
UMLS CUI [1,1]
C2148613
UMLS CUI [1,2]
C0205394
UMLS CUI [1,3]
C0006147
What non-milk foods does baby eat
Beschreibung

fup1_nonmilk_log

Datentyp

string

Alias
UMLS CUI [1,1]
C0016452
UMLS CUI [1,2]
C2348235
UMLS CUI [1,3]
C0205394
UMLS CUI [1,4]
C0006147
Hardcoded to bacteria needed for analysis
Beschreibung

Moraxella classification

Datentyp

string

Alias
UMLS CUI [1,1]
C0008902
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C0026536
Presence of Moraxella within the sample
Beschreibung

Moraxella

Datentyp

text

Alias
UMLS CUI [1,1]
C3854307
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C0026536
Number of reads measured in the sample within the PRISM2 study
Beschreibung

OTU_ReadCount2

Datentyp

text

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0242485
UMLS CUI [1,3]
C0237753
UMLS CUI [1,4]
C0332285
UMLS CUI [1,5]
C0008976
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Ähnliche Modelle

This sample attributes table contains sample IDs, visit, postmenstrual ages at time of nsasal or rectal swab sampling, day of life of the nasal or rectal tests, body site, read counts, analyte type, tumor status, histological type, region of bacteria being sequenced, presence of bacteria or virus (Adenovirus, Bocavirus, Bordetella pertussis, Coronavirus 1-4, Chlamydophila pneumoniae, Enterobacteriaceae, Flu A, Flu B, Haemophilus influenzae, Human metapneumovirus, Moraxella, Mycoplasma hominis, Mycoplasma pneumoniae, parechovirus, PIV 1-3, Rhinovirus, RSV, Streptococcus pneumoniae, and Ureaplasma) within the sample, corresponding bacteria or virus classification, hospital admissions, due to wheezing or breathing problems, admitted to intensive care, admissions due to RSV, sick visits, sick visits due to wheezing or breathing problems or wheezing unknown, has baby chest sounded wheezy or whistling, occurred with or without colds, chest wheezy during daytime or nighttime, diagnosed with wheezing by doctor, cough without cold, coughing during daytime or nighttime, number of colds, breathing and heart rate monitor, oxygen therapy, CPAP or BIPAP, ventilator, trach or breathing tube, feeding tube in nose or stomach, other equipment used, is baby receiving breast milk, is baby receiving breast milk exclusively, did baby receive breast milk since last visit, for how many months did baby receive breast milk for more than half of feedings, does baby eat any non-milk foods, and what non-milk foods does baby eat.

5 Formulare
  1. StudyEvent: Prematurity Respiratory Outcomes Immune System and Microbiome Study
    1. Eligibility Criteria
    2. The subject consent file includes subject IDs, consent information, subject aliases, and study ID.
    3. This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    4. This subject phenotype table contains subject IDs, cohort, sex, ethnic, race, gestational ages at birth and discharge, birth mode, bronchopulmonary dysplasia status, persistent repiratory disease after one year, oxygen AUC (Area Under the ROC curve) at 7 and 14 days, days on 7 variables (oxygen, mechanical ventilation, high frequency ventilation, cpap, nasal cannula gt 1 lmp, any respiratory support, and nasal cannula), maximum mean airway pressure, last PMA and DOL on ETT for GT 2 days in a row, exposure to furry animals in the home, asthma, allergies and eczema within siblings, BMI of the mother at the time of delivery, chlorioamnionitis, season of birth, derived respiratory severity score, oxygen AUC for first 14 days of life, and difference between FIO2 weeks 1 and 2.
    5. This sample attributes table contains sample IDs, visit, postmenstrual ages at time of nsasal or rectal swab sampling, day of life of the nasal or rectal tests, body site, read counts, analyte type, tumor status, histological type, region of bacteria being sequenced, presence of bacteria or virus (Adenovirus, Bocavirus, Bordetella pertussis, Coronavirus 1-4, Chlamydophila pneumoniae, Enterobacteriaceae, Flu A, Flu B, Haemophilus influenzae, Human metapneumovirus, Moraxella, Mycoplasma hominis, Mycoplasma pneumoniae, parechovirus, PIV 1-3, Rhinovirus, RSV, Streptococcus pneumoniae, and Ureaplasma) within the sample, corresponding bacteria or virus classification, hospital admissions, due to wheezing or breathing problems, admitted to intensive care, admissions due to RSV, sick visits, sick visits due to wheezing or breathing problems or wheezing unknown, has baby chest sounded wheezy or whistling, occurred with or without colds, chest wheezy during daytime or nighttime, diagnosed with wheezing by doctor, cough without cold, coughing during daytime or nighttime, number of colds, breathing and heart rate monitor, oxygen therapy, CPAP or BIPAP, ventilator, trach or breathing tube, feeding tube in nose or stomach, other equipment used, is baby receiving breast milk, is baby receiving breast milk exclusively, did baby receive breast milk since last visit, for how many months did baby receive breast milk for more than half of feedings, does baby eat any non-milk foods, and what non-milk foods does baby eat.
Name
Typ
Description | Question | Decode (Coded Value)
Datentyp
Alias
Item Group
pht006797
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
Visit
Item
Label describing the purpose of the visit
string
C1704447 (UMLS CUI [1,1])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (TRUE)
C0027651 (UMLS CUI [1,1])
Region_16S
Item
Region of bacteria being sequenced
string
C0004611 (UMLS CUI [1,1])
C0205147 (UMLS CUI [1,2])
C1519249 (UMLS CUI [1,3])
OTU_ReadCount
Item
Number of reads measured in the sample
text
C2347026 (UMLS CUI [1,1])
C0242485 (UMLS CUI [1,2])
C0237753 (UMLS CUI [1,3])
nasalCGA
Item
Postmenstrual Age (weeks) at time of nasal swab sampling
float
C3828508 (UMLS CUI [1,1])
C3669207 (UMLS CUI [1,2])
nasalDol
Item
Day of life of the nasal test
text
C3669207 (UMLS CUI [1,1])
C5401457 (UMLS CUI [1,2])
rectalCGA
Item
Postmenstrual Age (weeks) at time of rectal swab sampling
float
C3828508 (UMLS CUI [1,1])
C0444215 (UMLS CUI [1,2])
rectalDol
Item
Day of life of the rectal test
text
C0444215 (UMLS CUI [1,1])
C5401457 (UMLS CUI [1,2])
Item
Presence of Adenovirus within the sample
text
C3854307 (UMLS CUI [1,1])
C0001483 (UMLS CUI [1,2])
C2347026 (UMLS CUI [1,3])
Adeno
Code List
Presence of Adenovirus within the sample
CL Item
no (0)
CL Item
yes (1)
Adeno classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0001483 (UMLS CUI [1,2])
C0936012 (UMLS CUI [1,3])
Item
Presence of Bocavirus within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C1641393 (UMLS CUI [1,3])
Boca
Code List
Presence of Bocavirus within the sample
CL Item
no (0)
CL Item
yes (1)
Boca classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C1641393 (UMLS CUI [1,3])
Item
Presence of Bordetella pertussis within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0006017 (UMLS CUI [1,3])
B. pert
Code List
Presence of Bordetella pertussis within the sample
CL Item
no (0)
CL Item
yes (1)
B. pert classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0006017 (UMLS CUI [1,3])
Item
Presence of Coronavirus 1 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C0206422 (UMLS CUI [1,4])
C0205447 (UMLS CUI [1,5])
Corona 1
Code List
Presence of Coronavirus 1 within the sample
CL Item
no (0)
CL Item
yes (1)
Corona 1 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205447 (UMLS CUI [1,5])
Item
Presence of Coronavirus 2 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205448 (UMLS CUI [1,5])
Corona 2
Code List
Presence of Coronavirus 2 within the sample
CL Item
no (0)
CL Item
yes (1)
Corona 2 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205448 (UMLS CUI [1,5])
Item
Presence of Coronavirus 3 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205449 (UMLS CUI [1,5])
Corona 3
Code List
Presence of Coronavirus 3 within the sample
CL Item
no (0)
CL Item
yes (1)
Corona 3 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205449 (UMLS CUI [1,5])
Item
Presence of Coronavirus 4 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205450 (UMLS CUI [1,5])
Corona 4
Code List
Presence of Coronavirus 4 within the sample
CL Item
no (0)
CL Item
yes (1)
Corona 4 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0206422 (UMLS CUI [1,3])
C0332307 (UMLS CUI [1,4])
C0205450 (UMLS CUI [1,5])
Item
Presence of Chlamydophila pneumoniae within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0887972 (UMLS CUI [1,3])
C. pneu
Code List
Presence of Chlamydophila pneumoniae within the sample
CL Item
no (0)
CL Item
yes (1)
C. pneu classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0887972 (UMLS CUI [1,3])
Item
Presence of Enterobacteriaceae within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0014346 (UMLS CUI [1,3])
Entero XL
Code List
Presence of Enterobacteriaceae within the sample
CL Item
no (0)
CL Item
yes (1)
Entero XL classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0014346 (UMLS CUI [1,3])
Item
Presence of Flu A within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0029347 (UMLS CUI [1,3])
Flu A
Code List
Presence of Flu A within the sample
CL Item
no (0)
CL Item
yes (1)
Flu A classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0029347 (UMLS CUI [1,3])
Item
Presence of Flu B within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0029348 (UMLS CUI [1,3])
Flu B
Code List
Presence of Flu B within the sample
CL Item
no (0)
CL Item
yes (1)
Flu B classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0029348 (UMLS CUI [1,3])
Item
Presence of Haemophilus influenzae within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0018483 (UMLS CUI [1,3])
H. influ
Code List
Presence of Haemophilus influenzae within the sample
CL Item
no (0)
CL Item
yes (1)
H. influ classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0018483 (UMLS CUI [1,3])
Item
Presence of Human metapneumovirus within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0949907 (UMLS CUI [1,3])
hMPV
Code List
Presence of Human metapneumovirus within the sample
CL Item
no (0)
CL Item
yes (1)
hMPV classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0949907 (UMLS CUI [1,3])
Item
Presence of Mycoplasma hominis within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0317838 (UMLS CUI [1,3])
M. hom
Code List
Presence of Mycoplasma hominis within the sample
CL Item
no (0)
CL Item
yes (1)
M. hom classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0317838 (UMLS CUI [1,3])
Item
Presence of Mycoplasma pneumoniae within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0026941 (UMLS CUI [1,3])
M. pneu
Code List
Presence of Mycoplasma pneumoniae within the sample
CL Item
no (0)
CL Item
yes (1)
M. pneu classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0026941 (UMLS CUI [1,3])
Item
Presence of parechovirus within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0950102 (UMLS CUI [1,3])
Parecho
Code List
Presence of parechovirus within the sample
CL Item
no (0)
CL Item
yes (1)
Parecho classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0950102 (UMLS CUI [1,3])
Item
Presence of PIV 1 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0600289 (UMLS CUI [1,3])
PIV 1
Code List
Presence of PIV 1 within the sample
CL Item
no (0)
CL Item
yes (1)
PIV 1 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0600289 (UMLS CUI [1,3])
Item
Presence of PIV 2 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0030391 (UMLS CUI [1,3])
PIV 2
Code List
Presence of PIV 2 within the sample
CL Item
no (0)
CL Item
yes (1)
PIV 2 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0030391 (UMLS CUI [1,3])
Item
Presence of PIV 3 within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0030392 (UMLS CUI [1,3])
PIV 3
Code List
Presence of PIV 3 within the sample
CL Item
no (0)
CL Item
yes (1)
PIV 3 classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0030392 (UMLS CUI [1,3])
Item
Presence of Rhinovirus within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0035473 (UMLS CUI [1,3])
Rhino
Code List
Presence of Rhinovirus within the sample
CL Item
no (0)
CL Item
yes (1)
Rhino classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0035473 (UMLS CUI [1,3])
Item
Presence of RSV within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0035236 (UMLS CUI [1,3])
RSV
Code List
Presence of RSV within the sample
CL Item
no (0)
CL Item
yes (1)
RSV classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0035236 (UMLS CUI [1,3])
Item
Presence of Streptococcus pneumoniae within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0038410 (UMLS CUI [1,3])
S. pneu
Code List
Presence of Streptococcus pneumoniae within the sample
CL Item
no (0)
CL Item
yes (1)
S. pneu classification
Item
Hardcoded to virus, needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0038410 (UMLS CUI [1,3])
Item
Presence of Ureaplasma within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0041944 (UMLS CUI [1,3])
Urea
Code List
Presence of Ureaplasma within the sample
CL Item
no (0)
CL Item
yes (1)
Urea classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0041944 (UMLS CUI [1,3])
huadmit
Item
Number hospital admissions
float
C1265611 (UMLS CUI [1,1])
C0184666 (UMLS CUI [1,2])
huwheeze
Item
Due to wheezing or breathing problems
float
C0678226 (UMLS CUI [1,1])
C0043144 (UMLS CUI [1,2])
C0678226 (UMLS CUI [2,1])
C3641913 (UMLS CUI [2,2])
huicu
Item
Admitted to intensive care
string
C0583239 (UMLS CUI [1,1])
hursv
Item
Admissions due to RSV
string
C0184666 (UMLS CUI [1,1])
C0678226 (UMLS CUI [1,2])
C0035236 (UMLS CUI [1,3])
huervt
Item
Sick visits
float
C2010702 (UMLS CUI [1,1])
C0545082 (UMLS CUI [1,2])
huervtunk
Item
Sick visits unknown
string
C2010702 (UMLS CUI [1,1])
C0545082 (UMLS CUI [1,2])
C0439673 (UMLS CUI [1,3])
huerwz
Item
Sick visits due to wheezing or breathing problems
float
C2010702 (UMLS CUI [1,1])
C0545082 (UMLS CUI [1,2])
C0678226 (UMLS CUI [1,3])
C0043144 (UMLS CUI [1,4])
C2010702 (UMLS CUI [2,1])
C0545082 (UMLS CUI [2,2])
C0678226 (UMLS CUI [2,3])
C3641913 (UMLS CUI [2,4])
huerwzunk
Item
Sick visits due to wheezing unk
string
C2010702 (UMLS CUI [1,1])
C0545082 (UMLS CUI [1,2])
C0678226 (UMLS CUI [1,3])
C0043144 (UMLS CUI [1,4])
C0439673 (UMLS CUI [1,5])
sswheeze
Item
Has baby chest sounded wheezy or whistling
string
C0021270 (UMLS CUI [1,1])
C0817096 (UMLS CUI [1,2])
C0043144 (UMLS CUI [1,3])
C0021270 (UMLS CUI [2,1])
C0817096 (UMLS CUI [2,2])
C0425483 (UMLS CUI [2,3])
sscold
Item
Occurred with colds
string
C2745955 (UMLS CUI [1,1])
C0009443 (UMLS CUI [1,2])
ssacold
Item
Occurred apart from colds
string
C2745955 (UMLS CUI [1,1])
C1705847 (UMLS CUI [1,2])
C0009443 (UMLS CUI [1,3])
sswday
Item
Chest wheezy during daytime
string
C0817096 (UMLS CUI [1,1])
C0043144 (UMLS CUI [1,2])
C0332169 (UMLS CUI [1,3])
sswnight
Item
Chest wheezy during nighttime
string
C0817096 (UMLS CUI [1,1])
C0043144 (UMLS CUI [1,2])
C0240526 (UMLS CUI [1,3])
ssdxw
Item
Diagnosed with wheezing by doctor
string
C0031831 (UMLS CUI [1,1])
C0011900 (UMLS CUI [1,2])
C0043144 (UMLS CUI [1,3])
sscough
Item
Cough without cold
string
C0010200 (UMLS CUI [1,1])
C0332288 (UMLS CUI [1,2])
C0009443 (UMLS CUI [1,3])
sscday
Item
Coughing during daytime
string
C0010200 (UMLS CUI [1,1])
C0332169 (UMLS CUI [1,2])
sscnight
Item
Coughing during nighttime
string
C0010200 (UMLS CUI [1,1])
C0240526 (UMLS CUI [1,2])
sshcold
Item
Number of colds
float
C1265611 (UMLS CUI [1,1])
C0009443 (UMLS CUI [1,2])
qsmonitor
Item
Breathing and Heart Rate Monitor
string
C4551528 (UMLS CUI [1,1])
C0513707 (UMLS CUI [2,1])
qsoxygen_fup
Item
Oxygen Therapy
string
C0184633 (UMLS CUI [1,1])
qscpaphome
Item
CPAP or BIPAP
string
C0199451 (UMLS CUI [1,1])
C1956423 (UMLS CUI [2,1])
qsventhome
Item
Ventilator
string
C0087153 (UMLS CUI [1,1])
qstrachfup
Item
Trach or breathing tube
string
C0184106 (UMLS CUI [1,1])
qsngtb
Item
Feeding tube in nose
string
C0192456 (UMLS CUI [1,1])
qsgastro
Item
Feeding tube in stomach
string
C0349717 (UMLS CUI [1,1])
qsoths
Item
Other equipment used
string
C0205394 (UMLS CUI [1,1])
C0014672 (UMLS CUI [1,2])
qothtechs
Item
Describe other equipment
string
C0205394 (UMLS CUI [1,1])
C0014672 (UMLS CUI [1,2])
C0678257 (UMLS CUI [1,3])
fup1_bmilk
Item
Is baby receiving breast milk
string
C0006147 (UMLS CUI [1,1])
fup1_bmilk_excl
Item
Is baby receiving breast milk exclusively
string
C0006147 (UMLS CUI [1,1])
C1548966 (UMLS CUI [1,2])
dymilkhome1
Item
Did baby receive breast milk since last visit
string
C0006147 (UMLS CUI [1,1])
C1711239 (UMLS CUI [1,2])
C1517741 (UMLS CUI [1,3])
C0545082 (UMLS CUI [1,4])
dyfeedhome1
Item
For how many months did baby receive breast milk for more than half of feedings
string
C0040223 (UMLS CUI [1,1])
C0006147 (UMLS CUI [1,2])
C5549115 (UMLS CUI [1,3])
C2148613 (UMLS CUI [1,4])
fup1_nonmilk
Item
Does baby eat any non-milk foods
string
C2148613 (UMLS CUI [1,1])
C0205394 (UMLS CUI [1,2])
C0006147 (UMLS CUI [1,3])
fup1_nonmilk_log
Item
What non-milk foods does baby eat
string
C0016452 (UMLS CUI [1,1])
C2348235 (UMLS CUI [1,2])
C0205394 (UMLS CUI [1,3])
C0006147 (UMLS CUI [1,4])
Moraxella classification
Item
Hardcoded to bacteria needed for analysis
string
C0008902 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C0026536 (UMLS CUI [1,3])
Item
Presence of Moraxella within the sample
text
C3854307 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C0026536 (UMLS CUI [1,3])
Moraxella
Code List
Presence of Moraxella within the sample
CL Item
no (0)
CL Item
yes (1)
OTU_ReadCount2
Item
Number of reads measured in the sample within the PRISM2 study
text
C2347026 (UMLS CUI [1,1])
C0242485 (UMLS CUI [1,2])
C0237753 (UMLS CUI [1,3])
C0332285 (UMLS CUI [1,4])
C0008976 (UMLS CUI [1,5])
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