English

This subject phenotype table contains subject IDs, cohort, sex, ethnic, race, gestational ages at birth and discharge, birth mode, bronchopulmonary dysplasia status, persistent repiratory disease after one year, oxygen AUC (Area Under the ROC curve) at 7 and 14 days, days on 7 variables (oxygen, mechanical ventilation, high frequency ventilation, cpap, nasal cannula gt 1 lmp, any respiratory support, and nasal cannula), maximum mean airway pressure, last PMA and DOL on ETT for GT 2 days in a row, exposure to furry animals in the home, asthma, allergies and eczema within siblings, BMI of the mother at the time of delivery, chlorioamnionitis, season of birth, derived respiratory severity score, oxygen AUC for first 14 days of life, and difference between FIO2 weeks 1 and 2.

5 forms  
  1. StudyEvent: Prematurity Respiratory Outcomes Immune System and Microbiome Study
    1. Eligibility Criteria
    2. The subject consent file includes subject IDs, consent information, subject aliases, and study ID.
    3. This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    4. This subject phenotype table contains subject IDs, cohort, sex, ethnic, race, gestational ages at birth and discharge, birth mode, bronchopulmonary dysplasia status, persistent repiratory disease after one year, oxygen AUC (Area Under the ROC curve) at 7 and 14 days, days on 7 variables (oxygen, mechanical ventilation, high frequency ventilation, cpap, nasal cannula gt 1 lmp, any respiratory support, and nasal cannula), maximum mean airway pressure, last PMA and DOL on ETT for GT 2 days in a row, exposure to furry animals in the home, asthma, allergies and eczema within siblings, BMI of the mother at the time of delivery, chlorioamnionitis, season of birth, derived respiratory severity score, oxygen AUC for first 14 days of life, and difference between FIO2 weeks 1 and 2.
    5. This sample attributes table contains sample IDs, visit, postmenstrual ages at time of nsasal or rectal swab sampling, day of life of the nasal or rectal tests, body site, read counts, analyte type, tumor status, histological type, region of bacteria being sequenced, presence of bacteria or virus (Adenovirus, Bocavirus, Bordetella pertussis, Coronavirus 1-4, Chlamydophila pneumoniae, Enterobacteriaceae, Flu A, Flu B, Haemophilus influenzae, Human metapneumovirus, Moraxella, Mycoplasma hominis, Mycoplasma pneumoniae, parechovirus, PIV 1-3, Rhinovirus, RSV, Streptococcus pneumoniae, and Ureaplasma) within the sample, corresponding bacteria or virus classification, hospital admissions, due to wheezing or breathing problems, admitted to intensive care, admissions due to RSV, sick visits, sick visits due to wheezing or breathing problems or wheezing unknown, has baby chest sounded wheezy or whistling, occurred with or without colds, chest wheezy during daytime or nighttime, diagnosed with wheezing by doctor, cough without cold, coughing during daytime or nighttime, number of colds, breathing and heart rate monitor, oxygen therapy, CPAP or BIPAP, ventilator, trach or breathing tube, feeding tube in nose or stomach, other equipment used, is baby receiving breast milk, is baby receiving breast milk exclusively, did baby receive breast milk since last visit, for how many months did baby receive breast milk for more than half of feedings, does baby eat any non-milk foods, and what non-milk foods does baby eat.
pht006796
Description

pht006796

Alias
UMLS CUI [1,1]
C3846158
Unique Identifier
Description

SUBJECT_ID

Data type

string

Alias
UMLS CUI [1,1]
C2348585
Subject sex
Description

sex_screen

Data type

string

Alias
UMLS CUI [1,1]
C0150831
Subject race
Description

race

Data type

string

Alias
UMLS CUI [1,1]
C0034510
Subject ethnicity
Description

ethnic

Data type

string

Alias
UMLS CUI [1,1]
C5441552
Label indicating group of subject
Description

Cohort

Data type

string

Alias
UMLS CUI [1,1]
C2983610
UMLS CUI [1,2]
C0600091
Gestational age at birth
Description

gaBirth

Data type

float

Measurement units
  • weeks
Alias
UMLS CUI [1,1]
C0456129
weeks
Bronchopulmonary dysplasia status
Description

FinalStatus

Data type

string

Alias
UMLS CUI [1,1]
C0006287
UMLS CUI [1,2]
C0449438
Persistent Repiratory disease after one year
Description

PRD_1yr

Data type

string

Alias
UMLS CUI [1,1]
C0205322
UMLS CUI [1,2]
C0035204
UMLS CUI [1,3]
C4082117
Oxygen auc at 7 days
Description

auc_o2exposure_7d

Data type

float

Alias
UMLS CUI [1,1]
C0030054
UMLS CUI [1,2]
C0376690
UMLS CUI [1,3]
C1442452
Oxygen auc at 14 days
Description

auc_o2exposure_14d

Data type

float

Alias
UMLS CUI [1,1]
C0030054
UMLS CUI [1,2]
C0376690
UMLS CUI [1,3]
C1442457
Days on oxygen
Description

days_o2

Data type

float

Alias
UMLS CUI [1,1]
C0439228
UMLS CUI [1,2]
C0750480
UMLS CUI [1,3]
C0030054
Days on mechanical ventilation
Description

days_mv

Data type

float

Alias
UMLS CUI [1,1]
C0439228
UMLS CUI [1,2]
C0750480
UMLS CUI [1,3]
C0199470
Days on high frequency ventilation
Description

days_hf

Data type

float

Alias
UMLS CUI [1,1]
C0439228
UMLS CUI [1,2]
C0750480
UMLS CUI [1,3]
C0019541
Days on cpap
Description

days_cpap

Data type

float

Alias
UMLS CUI [1,1]
C0439228
UMLS CUI [1,2]
C0750480
UMLS CUI [1,3]
C0199451
Days on nasal cannula gt 1 lmp
Description

days_nc_gt1

Data type

float

Alias
UMLS CUI [1,1]
C0439228
UMLS CUI [1,2]
C0750480
UMLS CUI [1,3]
C0179574
UMLS CUI [1,4]
C2348235
Days on any respiratory support
Description

days_rs

Data type

float

Alias
UMLS CUI [1,1]
C0439228
UMLS CUI [1,2]
C0750480
UMLS CUI [1,3]
C5830458
Days on nasal cannula
Description

days_nc

Data type

float

Alias
UMLS CUI [1,1]
C0439228
UMLS CUI [1,2]
C0750480
UMLS CUI [1,3]
C0179574
Maximum mean airway pressure
Description

max_map

Data type

float

Alias
UMLS CUI [1,1]
C0806909
UMLS CUI [1,2]
C3697947
Last PMA on ETT for GT 2 days in a row
Description

last_pma_ett

Data type

float

Alias
UMLS CUI [1,1]
C0232021
UMLS CUI [1,2]
C0336630
UMLS CUI [1,3]
C1546658
Last DOL on ETT for GT 2 days in a row
Description

last_dol_ett

Data type

float

Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C0023072
UMLS CUI [1,3]
C0336630
UMLS CUI [1,4]
C1546658
Gestational age at discharge
Description

dis_age

Data type

float

Alias
UMLS CUI [1,1]
C0017504
UMLS CUI [1,2]
C2361123
Exposure to furry animals in the home
Description

qsexpandc

Data type

string

Alias
UMLS CUI [1,1]
C0332157
UMLS CUI [1,2]
C0020052
UMLS CUI [1,3]
C3843925
Asthma within the siblings
Description

qsastna_2

Data type

string

Alias
UMLS CUI [1,1]
C0004096
UMLS CUI [1,2]
C0037047
Allergies within the siblings
Description

qsallna_2

Data type

string

Alias
UMLS CUI [1,1]
C0020517
UMLS CUI [1,2]
C0037047
Eczema within the siblings
Description

qseczna_2

Data type

string

Alias
UMLS CUI [1,1]
C0013595
UMLS CUI [1,2]
C0037047
BMI of the mother at the time of delivery
Description

motherbmi

Data type

string

Alias
UMLS CUI [1,1]
C1305855
UMLS CUI [1,2]
C0026591
UMLS CUI [1,3]
C2053594
Was there any chlorioamnionitis
Description

rhchorio

Data type

string

Alias
UMLS CUI [1,1]
C0008495
Mode of Delivery
Description

BirthMode

Data type

string

Alias
UMLS CUI [1,1]
C1555567
Season of birth
Description

birth_season

Data type

string

Alias
UMLS CUI [1,1]
C0421451
UMLS CUI [1,2]
C0036497
Derived respiratory severity score
Description

RMSS

Data type

string

Alias
UMLS CUI [1,1]
C2924538
OxygenAUC for first 14d of life
Description

AUC14d

Data type

float

Alias
UMLS CUI [1,1]
C0030054
UMLS CUI [1,2]
C0376690
UMLS CUI [1,3]
C1442457
Difference between FIO2 week 2 and FIO2 week 1
Description

AUCwk2_adj

Data type

float

Alias
UMLS CUI [1,1]
C1705242
UMLS CUI [1,2]
C0428167
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Similar models

This subject phenotype table contains subject IDs, cohort, sex, ethnic, race, gestational ages at birth and discharge, birth mode, bronchopulmonary dysplasia status, persistent repiratory disease after one year, oxygen AUC (Area Under the ROC curve) at 7 and 14 days, days on 7 variables (oxygen, mechanical ventilation, high frequency ventilation, cpap, nasal cannula gt 1 lmp, any respiratory support, and nasal cannula), maximum mean airway pressure, last PMA and DOL on ETT for GT 2 days in a row, exposure to furry animals in the home, asthma, allergies and eczema within siblings, BMI of the mother at the time of delivery, chlorioamnionitis, season of birth, derived respiratory severity score, oxygen AUC for first 14 days of life, and difference between FIO2 weeks 1 and 2.

5 forms
  1. StudyEvent: Prematurity Respiratory Outcomes Immune System and Microbiome Study
    1. Eligibility Criteria
    2. The subject consent file includes subject IDs, consent information, subject aliases, and study ID.
    3. This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    4. This subject phenotype table contains subject IDs, cohort, sex, ethnic, race, gestational ages at birth and discharge, birth mode, bronchopulmonary dysplasia status, persistent repiratory disease after one year, oxygen AUC (Area Under the ROC curve) at 7 and 14 days, days on 7 variables (oxygen, mechanical ventilation, high frequency ventilation, cpap, nasal cannula gt 1 lmp, any respiratory support, and nasal cannula), maximum mean airway pressure, last PMA and DOL on ETT for GT 2 days in a row, exposure to furry animals in the home, asthma, allergies and eczema within siblings, BMI of the mother at the time of delivery, chlorioamnionitis, season of birth, derived respiratory severity score, oxygen AUC for first 14 days of life, and difference between FIO2 weeks 1 and 2.
    5. This sample attributes table contains sample IDs, visit, postmenstrual ages at time of nsasal or rectal swab sampling, day of life of the nasal or rectal tests, body site, read counts, analyte type, tumor status, histological type, region of bacteria being sequenced, presence of bacteria or virus (Adenovirus, Bocavirus, Bordetella pertussis, Coronavirus 1-4, Chlamydophila pneumoniae, Enterobacteriaceae, Flu A, Flu B, Haemophilus influenzae, Human metapneumovirus, Moraxella, Mycoplasma hominis, Mycoplasma pneumoniae, parechovirus, PIV 1-3, Rhinovirus, RSV, Streptococcus pneumoniae, and Ureaplasma) within the sample, corresponding bacteria or virus classification, hospital admissions, due to wheezing or breathing problems, admitted to intensive care, admissions due to RSV, sick visits, sick visits due to wheezing or breathing problems or wheezing unknown, has baby chest sounded wheezy or whistling, occurred with or without colds, chest wheezy during daytime or nighttime, diagnosed with wheezing by doctor, cough without cold, coughing during daytime or nighttime, number of colds, breathing and heart rate monitor, oxygen therapy, CPAP or BIPAP, ventilator, trach or breathing tube, feeding tube in nose or stomach, other equipment used, is baby receiving breast milk, is baby receiving breast milk exclusively, did baby receive breast milk since last visit, for how many months did baby receive breast milk for more than half of feedings, does baby eat any non-milk foods, and what non-milk foods does baby eat.
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht006796
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
Unique Identifier
string
C2348585 (UMLS CUI [1,1])
sex_screen
Item
Subject sex
string
C0150831 (UMLS CUI [1,1])
race
Item
Subject race
string
C0034510 (UMLS CUI [1,1])
ethnic
Item
Subject ethnicity
string
C5441552 (UMLS CUI [1,1])
Cohort
Item
Label indicating group of subject
string
C2983610 (UMLS CUI [1,1])
C0600091 (UMLS CUI [1,2])
gaBirth
Item
Gestational age at birth
float
C0456129 (UMLS CUI [1,1])
FinalStatus
Item
Bronchopulmonary dysplasia status
string
C0006287 (UMLS CUI [1,1])
C0449438 (UMLS CUI [1,2])
PRD_1yr
Item
Persistent Repiratory disease after one year
string
C0205322 (UMLS CUI [1,1])
C0035204 (UMLS CUI [1,2])
C4082117 (UMLS CUI [1,3])
auc_o2exposure_7d
Item
Oxygen auc at 7 days
float
C0030054 (UMLS CUI [1,1])
C0376690 (UMLS CUI [1,2])
C1442452 (UMLS CUI [1,3])
auc_o2exposure_14d
Item
Oxygen auc at 14 days
float
C0030054 (UMLS CUI [1,1])
C0376690 (UMLS CUI [1,2])
C1442457 (UMLS CUI [1,3])
days_o2
Item
Days on oxygen
float
C0439228 (UMLS CUI [1,1])
C0750480 (UMLS CUI [1,2])
C0030054 (UMLS CUI [1,3])
days_mv
Item
Days on mechanical ventilation
float
C0439228 (UMLS CUI [1,1])
C0750480 (UMLS CUI [1,2])
C0199470 (UMLS CUI [1,3])
days_hf
Item
Days on high frequency ventilation
float
C0439228 (UMLS CUI [1,1])
C0750480 (UMLS CUI [1,2])
C0019541 (UMLS CUI [1,3])
days_cpap
Item
Days on cpap
float
C0439228 (UMLS CUI [1,1])
C0750480 (UMLS CUI [1,2])
C0199451 (UMLS CUI [1,3])
days_nc_gt1
Item
Days on nasal cannula gt 1 lmp
float
C0439228 (UMLS CUI [1,1])
C0750480 (UMLS CUI [1,2])
C0179574 (UMLS CUI [1,3])
C2348235 (UMLS CUI [1,4])
days_rs
Item
Days on any respiratory support
float
C0439228 (UMLS CUI [1,1])
C0750480 (UMLS CUI [1,2])
C5830458 (UMLS CUI [1,3])
days_nc
Item
Days on nasal cannula
float
C0439228 (UMLS CUI [1,1])
C0750480 (UMLS CUI [1,2])
C0179574 (UMLS CUI [1,3])
max_map
Item
Maximum mean airway pressure
float
C0806909 (UMLS CUI [1,1])
C3697947 (UMLS CUI [1,2])
last_pma_ett
Item
Last PMA on ETT for GT 2 days in a row
float
C0232021 (UMLS CUI [1,1])
C0336630 (UMLS CUI [1,2])
C1546658 (UMLS CUI [1,3])
last_dol_ett
Item
Last DOL on ETT for GT 2 days in a row
float
C0449238 (UMLS CUI [1,1])
C0023072 (UMLS CUI [1,2])
C0336630 (UMLS CUI [1,3])
C1546658 (UMLS CUI [1,4])
dis_age
Item
Gestational age at discharge
float
C0017504 (UMLS CUI [1,1])
C2361123 (UMLS CUI [1,2])
qsexpandc
Item
Exposure to furry animals in the home
string
C0332157 (UMLS CUI [1,1])
C0020052 (UMLS CUI [1,2])
C3843925 (UMLS CUI [1,3])
qsastna_2
Item
Asthma within the siblings
string
C0004096 (UMLS CUI [1,1])
C0037047 (UMLS CUI [1,2])
qsallna_2
Item
Allergies within the siblings
string
C0020517 (UMLS CUI [1,1])
C0037047 (UMLS CUI [1,2])
qseczna_2
Item
Eczema within the siblings
string
C0013595 (UMLS CUI [1,1])
C0037047 (UMLS CUI [1,2])
motherbmi
Item
BMI of the mother at the time of delivery
string
C1305855 (UMLS CUI [1,1])
C0026591 (UMLS CUI [1,2])
C2053594 (UMLS CUI [1,3])
rhchorio
Item
Was there any chlorioamnionitis
string
C0008495 (UMLS CUI [1,1])
BirthMode
Item
Mode of Delivery
string
C1555567 (UMLS CUI [1,1])
birth_season
Item
Season of birth
string
C0421451 (UMLS CUI [1,1])
C0036497 (UMLS CUI [1,2])
RMSS
Item
Derived respiratory severity score
string
C2924538 (UMLS CUI [1,1])
AUC14d
Item
OxygenAUC for first 14d of life
float
C0030054 (UMLS CUI [1,1])
C0376690 (UMLS CUI [1,2])
C1442457 (UMLS CUI [1,3])
AUCwk2_adj
Item
Difference between FIO2 week 2 and FIO2 week 1
float
C1705242 (UMLS CUI [1,1])
C0428167 (UMLS CUI [1,2])
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