Engelsk

This sample attributes data table includes body site where sample was collected, analyte type, tumor status, histological type, RNA quality, sample collection day, and flow cell number and lane on which sample was sequenced.

5 Formulär  
pht004940
Beskrivning

pht004940

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Beskrivning

SAMPLE_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Beskrivning

BODY_SITE

Datatyp

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Beskrivning

ANALYTE_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Beskrivning

IS_TUMOR

Datatyp

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Beskrivning

HISTOLOGICAL_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
RNA quality indicator
Beskrivning

RNA_QUALITY

Datatyp

float

Alias
UMLS CUI [1,1]
C0035668
UMLS CUI [1,2]
C0332306
Day of sample collection within study time frame
Beskrivning

TIME_POINT

Datatyp

string

Alias
UMLS CUI [1,1]
C0011008
UMLS CUI [1,2]
C0200345
Flow cell ID on which sample was sequenced
Beskrivning

FLOW_CELL_NUMBER

Datatyp

string

Alias
UMLS CUI [1,1]
C4727199
UMLS CUI [1,2]
C0600091
UMLS CUI [1,3]
C1561491
Flow cell lane on which sample was sequenced
Beskrivning

FLOW_CELL_LANE

Datatyp

string

Alias
UMLS CUI [1,1]
C4727199
UMLS CUI [1,2]
C1708639
UMLS CUI [1,3]
C1561491
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Similar models

This sample attributes data table includes body site where sample was collected, analyte type, tumor status, histological type, RNA quality, sample collection day, and flow cell number and lane on which sample was sequenced.

5 Formulär
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht004940
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (Y)
C0027651 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
RNA_QUALITY
Item
RNA quality indicator
float
C0035668 (UMLS CUI [1,1])
C0332306 (UMLS CUI [1,2])
Item
Day of sample collection within study time frame
string
C0011008 (UMLS CUI [1,1])
C0200345 (UMLS CUI [1,2])
TIME_POINT
Code List
Day of sample collection within study time frame
CL Item
day0 (day0)
CL Item
day28 (day28)
CL Item
day56 (day56)
FLOW_CELL_NUMBER
Item
Flow cell ID on which sample was sequenced
string
C4727199 (UMLS CUI [1,1])
C0600091 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
FLOW_CELL_LANE
Item
Flow cell lane on which sample was sequenced
string
C4727199 (UMLS CUI [1,1])
C1708639 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
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