English

This sample attributes table includes body site where sample was collected, analyte type, tumor status, sequencing center, funding source, TOPMed phase, project, and study name.

4 forms  
pht004900
Description

pht004900

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Description

SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
Tumor Status
Description

IS_TUMOR

Data type

text

Alias
UMLS CUI [1,1]
C0475752
Name of the center which conducted sequencing
Description

SEQUENCING_CENTER

Data type

text

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C1561491
Funding provided for sequencing
Description

FUNDING_SOURCE

Data type

string

Alias
UMLS CUI [1,1]
C0243098
UMLS CUI [1,2]
C1561491
TOPMed Phase
Description

TOPMed_PHASE

Data type

string

Alias
UMLS CUI [1,1]
C0205390
UMLS CUI [1,2]
C2603343
Type of project in the TOPMed Group
Description

TOPMed_PROJECT

Data type

string

Alias
UMLS CUI [1,1]
C1709701
UMLS CUI [1,2]
C0332307
TOPMed-assigned short study name (1:1 with phs number)
Description

STUDY_NAME

Data type

string

Alias
UMLS CUI [1,1]
C2986334
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Similar models

This sample attributes table includes body site where sample was collected, analyte type, tumor status, sequencing center, funding source, TOPMed phase, project, and study name.

4 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht004900
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor Status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor Status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (Y)
C0027651 (UMLS CUI [1,1])
Item
Name of the center which conducted sequencing
text
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
SEQUENCING_CENTER
Code List
Name of the center which conducted sequencing
CL Item
Illumina (ILLUMINA)
CL Item
NY Genome Center (NYGC)
CL Item
University of Washington (UW)
FUNDING_SOURCE
Item
Funding provided for sequencing
string
C0243098 (UMLS CUI [1,1])
C1561491 (UMLS CUI [1,2])
TOPMed_PHASE
Item
TOPMed Phase
string
C0205390 (UMLS CUI [1,1])
C2603343 (UMLS CUI [1,2])
TOPMed_PROJECT
Item
Type of project in the TOPMed Group
string
C1709701 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
STUDY_NAME
Item
TOPMed-assigned short study name (1:1 with phs number)
string
C2986334 (UMLS CUI [1,1])
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