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Subject ID, age, clinical trial, tumor characteristics including ascites status, CA125 measurement, tumor stage and grade, malignancy, tumor morphology, remission, cytology, recurrence, residual tumor, pathological review, tumor site, cause of death, diagnostic, chemotherapy, and surgery of participants with ovarian cancer and involved in the "CMayo Clinic and Illumina Collaborative Early Stage Ovarian Cancer (ESOC) Study" project.

5 Formulär  
pht004639
Beskrivning

pht004639

Alias
UMLS CUI [1,1]
C3846158
De-identified subject ID
Beskrivning

SUBJECT_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C2348585
Morphology of tumor
Beskrivning

morphlogy

Datatyp

string

Alias
UMLS CUI [1,1]
C0332437
UMLS CUI [1,2]
C0027651
Stage of tumor
Beskrivning

stage

Datatyp

text

Alias
UMLS CUI [1,1]
C1300072
Initial stage of tumor
Beskrivning

grade

Datatyp

text

Alias
UMLS CUI [1,1]
C1300072
UMLS CUI [1,2]
C0205265
Age at diagnostic
Beskrivning

age at diagnostic

Datatyp

float

Måttenheter
  • years
Alias
UMLS CUI [1,1]
C1828181
years
Type of malignancy
Beskrivning

malignancytype

Datatyp

string

Alias
UMLS CUI [1,1]
C0006826
UMLS CUI [1,2]
C0332307
Stage, after final post-surgery pathological review
Beskrivning

stage_final

Datatyp

text

Alias
UMLS CUI [1,1]
C1300072
UMLS CUI [1,2]
C0231290
UMLS CUI [1,3]
C0543467
Sub-stage, after final post-surgery pathological review
Beskrivning

substage final

Datatyp

text

Alias
UMLS CUI [1,1]
C1300072
UMLS CUI [1,2]
C2983704
UMLS CUI [1,3]
C0231290
UMLS CUI [1,4]
C0543467
Grade, after final post-surgery pathological review
Beskrivning

grade_final

Datatyp

text

Alias
UMLS CUI [1,1]
C0919553
UMLS CUI [1,2]
C0231290
UMLS CUI [1,3]
C0543467
Whether the patient is alive or dead at date of last follow-up
Beskrivning

vital_status

Datatyp

text

Alias
UMLS CUI [1,1]
C2348568
UMLS CUI [1,2]
C1148433
UMLS CUI [1,3]
C1517741
UMLS CUI [1,4]
C3694716
Cause of death, if dead.
Beskrivning

causedeath

Datatyp

string

Alias
UMLS CUI [1,1]
C0007465
No evidence of disease (NED) or remission
Beskrivning

ned

Datatyp

text

Alias
UMLS CUI [1,1]
C1518340
UMLS CUI [1,2]
C0544452
UMLS CUI [1,3]
C0332197
Recurrence
Beskrivning

recur

Datatyp

text

Alias
UMLS CUI [1,1]
C0034897
Source of recurrence information
Beskrivning

recursource

Datatyp

string

Alias
UMLS CUI [1,1]
C0449416
UMLS CUI [1,2]
C0034897
UMLS CUI [1,3]
C1533716
Time from diagnostic to recurrence (months)
Beskrivning

t_dxrec_mth

Datatyp

float

Måttenheter
  • months
Alias
UMLS CUI [1,1]
C0872291
UMLS CUI [1,2]
C0034897
UMLS CUI [1,3]
C0231290
UMLS CUI [1,4]
C0430022
months
Time from diagnostic to last evaluation (months)
Beskrivning

t_dxeval_mth

Datatyp

float

Måttenheter
  • months
Alias
UMLS CUI [1,1]
C0872291
UMLS CUI [1,2]
C0220825
UMLS CUI [1,3]
C1517741
UMLS CUI [1,4]
C0231290
UMLS CUI [1,5]
C0430022
months
Time from diagnostic to last follow-up (months)
Beskrivning

t_fu_mth

Datatyp

float

Måttenheter
  • months
Alias
UMLS CUI [1,1]
C0872291
UMLS CUI [1,2]
C1522577
UMLS CUI [1,3]
C1517741
UMLS CUI [1,4]
C0231290
UMLS CUI [1,5]
C0430022
months
Time from diagnostic to death (months)
Beskrivning

t_dxdead_mth

Datatyp

float

Måttenheter
  • months
Alias
UMLS CUI [1,1]
C0872291
UMLS CUI [1,2]
C0011065
UMLS CUI [1,3]
C0231290
UMLS CUI [1,4]
C0430022
months
Institution where surgery was performed.
Beskrivning

surgloc

Datatyp

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C0543467
Whether this was a surgery for a primary cancer.
Beskrivning

surgoccur

Datatyp

string

Alias
UMLS CUI [1,1]
C0543467
UMLS CUI [1,2]
C0677930
Tumor site
Beskrivning

tumorsite

Datatyp

string

Alias
UMLS CUI [1,1]
C0475445
Whether fluids were present in the peritoneal cavity (ascites)
Beskrivning

ASCITES

Datatyp

string

Alias
UMLS CUI [1,1]
C0003962
Volume of ascites
Beskrivning

ascitesvol

Datatyp

float

Måttenheter
  • ml
Alias
UMLS CUI [1,1]
C2700258
UMLS CUI [1,2]
C0003962
ml
Whether the volume of ascites is known (if present)
Beskrivning

ascitesvolkn

Datatyp

string

Alias
UMLS CUI [1,1]
C2700258
UMLS CUI [1,2]
C0003962
Whether debulking was optimal or partial
Beskrivning

DEBULKIN

Datatyp

string

Alias
UMLS CUI [1,1]
C1706406
UMLS CUI [1,2]
C2698651
UMLS CUI [1,3]
C0728938
Whether percent debulking is known
Beskrivning

debulkperctkn

Datatyp

string

Alias
UMLS CUI [1,1]
C1706406
UMLS CUI [1,2]
C0439165
Percent debulking
Beskrivning

debulkperct

Datatyp

float

Alias
UMLS CUI [1,1]
C1706406
UMLS CUI [1,2]
C0439165
Peritoneal wash cytology
Beskrivning

PERICYTO

Datatyp

text

Alias
UMLS CUI [1,1]
C0010819
UMLS CUI [1,2]
C0442034
Are there visible residual tumor left after debulking
Beskrivning

residual

Datatyp

text

Alias
UMLS CUI [1,1]
C0543478
UMLS CUI [1,2]
C0205379
UMLS CUI [1,3]
C0231290
UMLS CUI [1,4]
C1706406
Whether the diameter of residual tumors is known
Beskrivning

residualdiakn

Datatyp

text

Alias
UMLS CUI [1,1]
C0543478
UMLS CUI [1,2]
C1301886
Residual diameter of residual tumors
Beskrivning

residualdiamm

Datatyp

float

Måttenheter
  • mm
Alias
UMLS CUI [1,1]
C0543478
UMLS CUI [1,2]
C1301886
mm
Months between surgery and initial diagnostic
Beskrivning

surg_months

Datatyp

text

Måttenheter
  • months
Alias
UMLS CUI [1,1]
C0872291
UMLS CUI [1,2]
C0543467
UMLS CUI [1,3]
C0231290
UMLS CUI [1,4]
C2316983
UMLS CUI [1,5]
C0205265
months
Type of surgery 1
Beskrivning

typesrg1

Datatyp

string

Alias
UMLS CUI [1,1]
C0543467
UMLS CUI [1,2]
C0332307
Type of surgery 2
Beskrivning

typesrg2

Datatyp

string

Alias
UMLS CUI [1,1]
C0543467
UMLS CUI [1,2]
C0332307
Type of surgery 3
Beskrivning

typesrg3

Datatyp

string

Alias
UMLS CUI [1,1]
C0543467
UMLS CUI [1,2]
C0332307
Type of surgery 4
Beskrivning

typesrg4

Datatyp

string

Alias
UMLS CUI [1,1]
C0543467
UMLS CUI [1,2]
C0332307
First CA125 measurement date (months)
Beskrivning

ca125dt1_mth

Datatyp

float

Måttenheter
  • months
Alias
UMLS CUI [1,1]
C0011008
UMLS CUI [1,2]
C0022885
UMLS CUI [1,3]
C0006610
months
First CA125 measurement value
Beskrivning

ca125l1

Datatyp

float

Alias
UMLS CUI [1,1]
C0022885
UMLS CUI [1,2]
C0006610
UMLS CUI [1,3]
C1274040
UMLS CUI [1,4]
C1522609
Second CA125 measurement date (months)
Beskrivning

ca125dt2_mth

Datatyp

float

Måttenheter
  • months
Alias
UMLS CUI [1,1]
C0011008
UMLS CUI [1,2]
C0022885
UMLS CUI [1,3]
C0006610
months
Second CA125 measurement value
Beskrivning

ca125l2

Datatyp

float

Alias
UMLS CUI [1,1]
C0022885
UMLS CUI [1,2]
C0006610
UMLS CUI [1,3]
C1274040
UMLS CUI [1,4]
C1522609
Third CA125 measurement date (months)
Beskrivning

ca125dt3_mth

Datatyp

float

Måttenheter
  • months
Alias
UMLS CUI [1,1]
C0011008
UMLS CUI [1,2]
C0022885
UMLS CUI [1,3]
C0006610
months
Third CA125 measurement value
Beskrivning

ca125l3

Datatyp

float

Alias
UMLS CUI [1,1]
C0022885
UMLS CUI [1,2]
C0006610
UMLS CUI [1,3]
C1274040
UMLS CUI [1,4]
C1522609
Fourth CA125 measurement date (months)
Beskrivning

ca125dt4_mth

Datatyp

float

Måttenheter
  • months
Alias
UMLS CUI [1,1]
C0011008
UMLS CUI [1,2]
C0022885
UMLS CUI [1,3]
C0006610
months
Fourth CA125 measurement value
Beskrivning

ca125l4

Datatyp

float

Alias
UMLS CUI [1,1]
C0022885
UMLS CUI [1,2]
C0006610
UMLS CUI [1,3]
C1274040
UMLS CUI [1,4]
C1522609
Institution where chemotherapy was administered
Beskrivning

chemoloc

Datatyp

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0392920
UMLS CUI [1,3]
C1533734
Clinical trial
Beskrivning

clinicaltrialyn

Datatyp

text

Alias
UMLS CUI [1,1]
C0008976
Chemotherapy drugs regimen 1
Beskrivning

chemdrg1

Datatyp

string

Alias
UMLS CUI [1,1]
C0392920
UMLS CUI [1,2]
C0013227
Chemotherapy drugs regimen 2
Beskrivning

chemdrg2

Datatyp

string

Alias
UMLS CUI [1,1]
C0392920
UMLS CUI [1,2]
C0013227
Number of cycles of chemotherapy regimen 1
Beskrivning

cyclesdrug1

Datatyp

float

Alias
UMLS CUI [1,1]
C2045831
Number of cycles of chemotherapy regimen 2
Beskrivning

cyclesdrug2

Datatyp

float

Alias
UMLS CUI [1,1]
C2045831
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Similar models

Subject ID, age, clinical trial, tumor characteristics including ascites status, CA125 measurement, tumor stage and grade, malignancy, tumor morphology, remission, cytology, recurrence, residual tumor, pathological review, tumor site, cause of death, diagnostic, chemotherapy, and surgery of participants with ovarian cancer and involved in the "CMayo Clinic and Illumina Collaborative Early Stage Ovarian Cancer (ESOC) Study" project.

5 Formulär
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht004639
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
De-identified subject ID
string
C4684638 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
morphlogy
Item
Morphology of tumor
string
C0332437 (UMLS CUI [1,1])
C0027651 (UMLS CUI [1,2])
Item
Stage of tumor
text
C1300072 (UMLS CUI [1,1])
stage
Code List
Stage of tumor
CL Item
Stage 1A (1A)
CL Item
Stage 1B (1B)
CL Item
Stage 1C (1C)
CL Item
Stage 2B (2B)
Item
Initial stage of tumor
text
C1300072 (UMLS CUI [1,1])
C0205265 (UMLS CUI [1,2])
grade
Code List
Initial stage of tumor
CL Item
Grade 3 (3)
CL Item
Grade 4 (4)
CL Item
Grade 3 or 4 (high)
age at diagnostic
Item
Age at diagnostic
float
C1828181 (UMLS CUI [1,1])
malignancytype
Item
Type of malignancy
string
C0006826 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
Item
Stage, after final post-surgery pathological review
text
C1300072 (UMLS CUI [1,1])
C0231290 (UMLS CUI [1,2])
C0543467 (UMLS CUI [1,3])
stage_final
Code List
Stage, after final post-surgery pathological review
CL Item
Stage 1 (1)
CL Item
Stage 2 (2)
Item
Sub-stage, after final post-surgery pathological review
text
C1300072 (UMLS CUI [1,1])
C2983704 (UMLS CUI [1,2])
C0231290 (UMLS CUI [1,3])
C0543467 (UMLS CUI [1,4])
substage final
Code List
Sub-stage, after final post-surgery pathological review
CL Item
Sub Stage A (A)
CL Item
Sub Stage B (B)
CL Item
Sub Stage C (C)
Item
Grade, after final post-surgery pathological review
text
C0919553 (UMLS CUI [1,1])
C0231290 (UMLS CUI [1,2])
C0543467 (UMLS CUI [1,3])
grade_final
Code List
Grade, after final post-surgery pathological review
CL Item
Grade 3 (3)
CL Item
Grade 4 (4)
Item
Whether the patient is alive or dead at date of last follow-up
text
C2348568 (UMLS CUI [1,1])
C1148433 (UMLS CUI [1,2])
C1517741 (UMLS CUI [1,3])
C3694716 (UMLS CUI [1,4])
vital_status
Code List
Whether the patient is alive or dead at date of last follow-up
CL Item
Alive (alive)
CL Item
Dead (dead)
causedeath
Item
Cause of death, if dead.
string
C0007465 (UMLS CUI [1,1])
Item
No evidence of disease (NED) or remission
text
C1518340 (UMLS CUI [1,1])
C0544452 (UMLS CUI [1,2])
C0332197 (UMLS CUI [1,3])
ned
Code List
No evidence of disease (NED) or remission
CL Item
No evidence of Disease (yes)
Item
Recurrence
text
C0034897 (UMLS CUI [1,1])
recur
Code List
Recurrence
CL Item
No recurrence (No)
CL Item
Recurrence (Yes)
recursource
Item
Source of recurrence information
string
C0449416 (UMLS CUI [1,1])
C0034897 (UMLS CUI [1,2])
C1533716 (UMLS CUI [1,3])
t_dxrec_mth
Item
Time from diagnostic to recurrence (months)
float
C0872291 (UMLS CUI [1,1])
C0034897 (UMLS CUI [1,2])
C0231290 (UMLS CUI [1,3])
C0430022 (UMLS CUI [1,4])
t_dxeval_mth
Item
Time from diagnostic to last evaluation (months)
float
C0872291 (UMLS CUI [1,1])
C0220825 (UMLS CUI [1,2])
C1517741 (UMLS CUI [1,3])
C0231290 (UMLS CUI [1,4])
C0430022 (UMLS CUI [1,5])
t_fu_mth
Item
Time from diagnostic to last follow-up (months)
float
C0872291 (UMLS CUI [1,1])
C1522577 (UMLS CUI [1,2])
C1517741 (UMLS CUI [1,3])
C0231290 (UMLS CUI [1,4])
C0430022 (UMLS CUI [1,5])
t_dxdead_mth
Item
Time from diagnostic to death (months)
float
C0872291 (UMLS CUI [1,1])
C0011065 (UMLS CUI [1,2])
C0231290 (UMLS CUI [1,3])
C0430022 (UMLS CUI [1,4])
surgloc
Item
Institution where surgery was performed.
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C0543467 (UMLS CUI [1,3])
surgoccur
Item
Whether this was a surgery for a primary cancer.
string
C0543467 (UMLS CUI [1,1])
C0677930 (UMLS CUI [1,2])
tumorsite
Item
Tumor site
string
C0475445 (UMLS CUI [1,1])
ASCITES
Item
Whether fluids were present in the peritoneal cavity (ascites)
string
C0003962 (UMLS CUI [1,1])
ascitesvol
Item
Volume of ascites
float
C2700258 (UMLS CUI [1,1])
C0003962 (UMLS CUI [1,2])
ascitesvolkn
Item
Whether the volume of ascites is known (if present)
string
C2700258 (UMLS CUI [1,1])
C0003962 (UMLS CUI [1,2])
DEBULKIN
Item
Whether debulking was optimal or partial
string
C1706406 (UMLS CUI [1,1])
C2698651 (UMLS CUI [1,2])
C0728938 (UMLS CUI [1,3])
debulkperctkn
Item
Whether percent debulking is known
string
C1706406 (UMLS CUI [1,1])
C0439165 (UMLS CUI [1,2])
debulkperct
Item
Percent debulking
float
C1706406 (UMLS CUI [1,1])
C0439165 (UMLS CUI [1,2])
PERICYTO
Item
Peritoneal wash cytology
text
C0010819 (UMLS CUI [1,1])
C0442034 (UMLS CUI [1,2])
Item
Are there visible residual tumor left after debulking
text
C0543478 (UMLS CUI [1,1])
C0205379 (UMLS CUI [1,2])
C0231290 (UMLS CUI [1,3])
C1706406 (UMLS CUI [1,4])
residual
Code List
Are there visible residual tumor left after debulking
CL Item
No residual tumor after debulking (No)
CL Item
Unknown residual tumor (Unknown)
Item
Whether the diameter of residual tumors is known
text
C0543478 (UMLS CUI [1,1])
C1301886 (UMLS CUI [1,2])
residualdiakn
Code List
Whether the diameter of residual tumors is known
CL Item
Residual Status known (Known)
CL Item
Residual Status unknown (Unknown)
residualdiamm
Item
Residual diameter of residual tumors
float
C0543478 (UMLS CUI [1,1])
C1301886 (UMLS CUI [1,2])
surg_months
Item
Months between surgery and initial diagnostic
text
C0872291 (UMLS CUI [1,1])
C0543467 (UMLS CUI [1,2])
C0231290 (UMLS CUI [1,3])
C2316983 (UMLS CUI [1,4])
C0205265 (UMLS CUI [1,5])
typesrg1
Item
Type of surgery 1
string
C0543467 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
typesrg2
Item
Type of surgery 2
string
C0543467 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
typesrg3
Item
Type of surgery 3
string
C0543467 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
typesrg4
Item
Type of surgery 4
string
C0543467 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
ca125dt1_mth
Item
First CA125 measurement date (months)
float
C0011008 (UMLS CUI [1,1])
C0022885 (UMLS CUI [1,2])
C0006610 (UMLS CUI [1,3])
ca125l1
Item
First CA125 measurement value
float
C0022885 (UMLS CUI [1,1])
C0006610 (UMLS CUI [1,2])
C1274040 (UMLS CUI [1,3])
C1522609 (UMLS CUI [1,4])
ca125dt2_mth
Item
Second CA125 measurement date (months)
float
C0011008 (UMLS CUI [1,1])
C0022885 (UMLS CUI [1,2])
C0006610 (UMLS CUI [1,3])
ca125l2
Item
Second CA125 measurement value
float
C0022885 (UMLS CUI [1,1])
C0006610 (UMLS CUI [1,2])
C1274040 (UMLS CUI [1,3])
C1522609 (UMLS CUI [1,4])
ca125dt3_mth
Item
Third CA125 measurement date (months)
float
C0011008 (UMLS CUI [1,1])
C0022885 (UMLS CUI [1,2])
C0006610 (UMLS CUI [1,3])
ca125l3
Item
Third CA125 measurement value
float
C0022885 (UMLS CUI [1,1])
C0006610 (UMLS CUI [1,2])
C1274040 (UMLS CUI [1,3])
C1522609 (UMLS CUI [1,4])
ca125dt4_mth
Item
Fourth CA125 measurement date (months)
float
C0011008 (UMLS CUI [1,1])
C0022885 (UMLS CUI [1,2])
C0006610 (UMLS CUI [1,3])
ca125l4
Item
Fourth CA125 measurement value
float
C0022885 (UMLS CUI [1,1])
C0006610 (UMLS CUI [1,2])
C1274040 (UMLS CUI [1,3])
C1522609 (UMLS CUI [1,4])
chemoloc
Item
Institution where chemotherapy was administered
string
C1301943 (UMLS CUI [1,1])
C0392920 (UMLS CUI [1,2])
C1533734 (UMLS CUI [1,3])
clinicaltrialyn
Item
Clinical trial
text
C0008976 (UMLS CUI [1,1])
chemdrg1
Item
Chemotherapy drugs regimen 1
string
C0392920 (UMLS CUI [1,1])
C0013227 (UMLS CUI [1,2])
chemdrg2
Item
Chemotherapy drugs regimen 2
string
C0392920 (UMLS CUI [1,1])
C0013227 (UMLS CUI [1,2])
cyclesdrug1
Item
Number of cycles of chemotherapy regimen 1
float
C2045831 (UMLS CUI [1,1])
cyclesdrug2
Item
Number of cycles of chemotherapy regimen 2
float
C2045831 (UMLS CUI [1,1])
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