SAMPID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Outcome of quality control testing
text
C1624730 (UMLS CUI [1,1])
C0034378 (UMLS CUI [1,2])
Code List
Outcome of quality control testing
CL Item
Failed QC; did not meet minimum of 70% coverage of target sequence at 20x depth and/or 90% concordance with GWAS SNPs (0)
CL Item
Passed QC; data provides a minimum of 70% coverage of target sequence at 20x depth and 90% concordance with GWAS SNPs (1)
CL Item
Coverage QC passed - no SNP array data available for concordance test; sequence data provides a minimum of 70% coverage of target sequence at 20x depth (2)