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This subject phenotype data table includes subject sex, age, year of enrollment, receipt of seasonal influenza vaccine (n=3; 2008-2010), recipet of 2009 pH1N1 swine influenza vaccine, virus detected in nasal wash, antiviral drug taken by subjects, maximum oral temperature on first day of illness, duration of symptoms, and log2 antibody titers (n=4 variables; hemagglutination inhibition assay; Time: baseline, acute infection, convalescent, and spring).

9 Formulaires  
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. This subject consent data table contains subject IDs, consent group information, subject aliases, and affection status (all subjects are controls).
    3. This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes the study/substudy (phs accession) that the sample belongs to and sample use.
    4. This subject phenotype data table includes subject sex, race, age, year of enrollment, log2 antibody titers (n=18 variables; Assays: hemagglutination inhibition and neutralization; Antigens: H1N1, H3N2, FluB; Time: preimmune, 14 days, and 28 days).
    5. This sample attributes data table includes body site where sample was collected, analyte type, and genotyping center.
    6. This sample GEO mapping data table includes a mapping of sample IDs to GEO accession IDs, and RNA IDs collected at each study visit.
    7. This subject phenotype data table includes subject sex, age, year of enrollment, receipt of seasonal influenza vaccine (n=3; 2008-2010), recipet of 2009 pH1N1 swine influenza vaccine, virus detected in nasal wash, antiviral drug taken by subjects, maximum oral temperature on first day of illness, duration of symptoms, and log2 antibody titers (n=4 variables; hemagglutination inhibition assay; Time: baseline, acute infection, convalescent, and spring).
    8. This sample attributes data table includes body site where sample was collected, analyte type, genotyping and sequencing centers, and sample collection date.
    9. This subject GEO mapping data table includes a mapping of subject IDs to GEO accession IDs, and RNA IDs collected different time points.
pht005095
Description

pht005095

Alias
UMLS CUI [1,1]
C3846158
De-identified Subject ID
Description

SUBJECT_ID

Type de données

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C2348585
Gender of participant
Description

sex

Type de données

text

Alias
UMLS CUI [1,1]
C0079399
Year of enrollment
Description

Year_Enrollment

Type de données

string

Alias
UMLS CUI [1,1]
C0439234
UMLS CUI [1,2]
C1516879
Subject age on the day of the first illness visit
Description

Age

Type de données

float

Unités de mesure
  • years
Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [1,2]
C1442880
UMLS CUI [1,3]
C5207077
UMLS CUI [1,4]
C0221423
years
Prior receipt of 2008 seasonal influenza vaccine
Description

Seasonal_flu_vaccine_2008

Type de données

text

Alias
UMLS CUI [1,1]
C2985846
UMLS CUI [1,2]
C0439234
UMLS CUI [1,3]
C0021403
UMLS CUI [1,4]
C3644190
Prior receipt of 2009 seasonal influenza vaccine
Description

Seasonal_flu_vaccine_2009

Type de données

text

Alias
UMLS CUI [1,1]
C2985846
UMLS CUI [1,2]
C0439234
UMLS CUI [1,3]
C0021403
UMLS CUI [1,4]
C3644190
Prior receipt of 2010 seasonal influenza vaccine
Description

Seasonal_flu_vaccine_2010

Type de données

text

Alias
UMLS CUI [1,1]
C2985846
UMLS CUI [1,2]
C0439234
UMLS CUI [1,3]
C0021403
UMLS CUI [1,4]
C3644190
Prior receipt of 2009 pH1N1 swine influenza vaccine
Description

pH1N1_swine_flu_vaccine_2009

Type de données

text

Alias
UMLS CUI [1,1]
C2985846
UMLS CUI [1,2]
C0302237
Virus detected in nasal wash specimens collected during the first illness visit, RT-PCR assay
Description

Virus_by_PCR

Type de données

string

Alias
UMLS CUI [1,1]
C1294356
UMLS CUI [1,2]
C0206289
UMLS CUI [1,3]
C0221423
UMLS CUI [1,4]
C0599161
Antiviral drug taken by the subjects
Description

Medications

Type de données

string

Alias
UMLS CUI [1,1]
C0003451
UMLS CUI [1,2]
C1705169
Maximum oral temperature on the first day of illness
Description

Oral_temperature

Type de données

float

Unités de mesure
  • degrees Fahrenheit
Alias
UMLS CUI [1,1]
C0005903
UMLS CUI [1,2]
C0442027
UMLS CUI [1,3]
C1442880
degrees Fahrenheit
Duration of symptoms
Description

Duration

Type de données

text

Unités de mesure
  • days
Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C1457887
days
Log2 antibody titer, hemagglutination inhibition assay; H1N1 antigen; baseline
Description

HAI_H1N1_Baseline

Type de données

float

Unités de mesure
  • titer
Alias
UMLS CUI [1,1]
C1883661
UMLS CUI [1,2]
C0474643
UMLS CUI [1,3]
C0018904
UMLS CUI [1,4]
C4033624
UMLS CUI [1,5]
C1442488
titer
Log2 antibody titer, hemagglutination inhibition assay; H1N1 antigen; acute infection
Description

HAI_H1N1_Acute_Infection

Type de données

float

Unités de mesure
  • titer
Alias
UMLS CUI [1,1]
C1883661
UMLS CUI [1,2]
C0474643
UMLS CUI [1,3]
C0018904
UMLS CUI [1,4]
C4033624
UMLS CUI [1,5]
C0275518
titer
Log2 antibody titer, hemagglutination inhibition assay; H1N1 antigen; convalescent
Description

HAI_H1N1_Convalescent

Type de données

float

Unités de mesure
  • titer
Alias
UMLS CUI [1,1]
C1883661
UMLS CUI [1,2]
C0474643
UMLS CUI [1,3]
C0018904
UMLS CUI [1,4]
C4033624
UMLS CUI [1,5]
C0740326
titer
Log2 antibody titer, hemagglutination inhibition assay; H1N1 antigen; spring
Description

HAI_H1N1_Spring

Type de données

float

Unités de mesure
  • titer
Alias
UMLS CUI [1,1]
C1883661
UMLS CUI [1,2]
C0474643
UMLS CUI [1,3]
C0018904
UMLS CUI [1,4]
C4033624
UMLS CUI [1,5]
C0241232
titer
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Similar models

This subject phenotype data table includes subject sex, age, year of enrollment, receipt of seasonal influenza vaccine (n=3; 2008-2010), recipet of 2009 pH1N1 swine influenza vaccine, virus detected in nasal wash, antiviral drug taken by subjects, maximum oral temperature on first day of illness, duration of symptoms, and log2 antibody titers (n=4 variables; hemagglutination inhibition assay; Time: baseline, acute infection, convalescent, and spring).

9 Formulaires
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. This subject consent data table contains subject IDs, consent group information, subject aliases, and affection status (all subjects are controls).
    3. This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes the study/substudy (phs accession) that the sample belongs to and sample use.
    4. This subject phenotype data table includes subject sex, race, age, year of enrollment, log2 antibody titers (n=18 variables; Assays: hemagglutination inhibition and neutralization; Antigens: H1N1, H3N2, FluB; Time: preimmune, 14 days, and 28 days).
    5. This sample attributes data table includes body site where sample was collected, analyte type, and genotyping center.
    6. This sample GEO mapping data table includes a mapping of sample IDs to GEO accession IDs, and RNA IDs collected at each study visit.
    7. This subject phenotype data table includes subject sex, age, year of enrollment, receipt of seasonal influenza vaccine (n=3; 2008-2010), recipet of 2009 pH1N1 swine influenza vaccine, virus detected in nasal wash, antiviral drug taken by subjects, maximum oral temperature on first day of illness, duration of symptoms, and log2 antibody titers (n=4 variables; hemagglutination inhibition assay; Time: baseline, acute infection, convalescent, and spring).
    8. This sample attributes data table includes body site where sample was collected, analyte type, genotyping and sequencing centers, and sample collection date.
    9. This subject GEO mapping data table includes a mapping of subject IDs to GEO accession IDs, and RNA IDs collected different time points.
Name
Type
Description | Question | Decode (Coded Value)
Type de données
Alias
Item Group
pht005095
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
De-identified Subject ID
string
C4684638 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
Item
Gender of participant
text
C0079399 (UMLS CUI [1,1])
sex
Code List
Gender of participant
CL Item
Male (M)
C0086582 (UMLS CUI [1,1])
CL Item
Female (F)
C0086287 (UMLS CUI [1,1])
Year_Enrollment
Item
Year of enrollment
string
C0439234 (UMLS CUI [1,1])
C1516879 (UMLS CUI [1,2])
Age
Item
Subject age on the day of the first illness visit
float
C0001779 (UMLS CUI [1,1])
C1442880 (UMLS CUI [1,2])
C5207077 (UMLS CUI [1,3])
C0221423 (UMLS CUI [1,4])
Item
Prior receipt of 2008 seasonal influenza vaccine
text
C2985846 (UMLS CUI [1,1])
C0439234 (UMLS CUI [1,2])
C0021403 (UMLS CUI [1,3])
C3644190 (UMLS CUI [1,4])
Seasonal_flu_vaccine_2008
Code List
Prior receipt of 2008 seasonal influenza vaccine
CL Item
Have been vaccinated (YES)
C1519885 (UMLS CUI [1,1])
CL Item
Have not been vaccinated (NO)
C1518422 (UMLS CUI [1,1])
C1519885 (UMLS CUI [1,2])
CL Item
Not applicable (NA)
C1272460 (UMLS CUI [1,1])
CL Item
Unknown (UNK)
C0439673 (UMLS CUI [1,1])
Item
Prior receipt of 2009 seasonal influenza vaccine
text
C2985846 (UMLS CUI [1,1])
C0439234 (UMLS CUI [1,2])
C0021403 (UMLS CUI [1,3])
C3644190 (UMLS CUI [1,4])
Seasonal_flu_vaccine_2009
Code List
Prior receipt of 2009 seasonal influenza vaccine
CL Item
Have been vaccinated (YES)
C1519885 (UMLS CUI [1,1])
CL Item
Have not been vaccinated (NO)
C1518422 (UMLS CUI [1,1])
C1519885 (UMLS CUI [1,2])
CL Item
Not applicable (NA)
C1272460 (UMLS CUI [1,1])
CL Item
Unknown (UNK)
C0439673 (UMLS CUI [1,1])
Item
Prior receipt of 2010 seasonal influenza vaccine
text
C2985846 (UMLS CUI [1,1])
C0439234 (UMLS CUI [1,2])
C0021403 (UMLS CUI [1,3])
C3644190 (UMLS CUI [1,4])
Seasonal_flu_vaccine_2010
Code List
Prior receipt of 2010 seasonal influenza vaccine
CL Item
Have been vaccinated (YES)
C1519885 (UMLS CUI [1,1])
CL Item
Have not been vaccinated (NO)
C1519885 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Not applicable (NA)
C1272460 (UMLS CUI [1,1])
CL Item
Unknown (UNK)
C0439673 (UMLS CUI [1,1])
Item
Prior receipt of 2009 pH1N1 swine influenza vaccine
text
C2985846 (UMLS CUI [1,1])
C0302237 (UMLS CUI [1,2])
pH1N1_swine_flu_vaccine_2009
Code List
Prior receipt of 2009 pH1N1 swine influenza vaccine
CL Item
Have been vaccinated (YES)
CL Item
Have not been vaccinated (NO)
CL Item
Not applicable (NA)
C1272460 (UMLS CUI [1,1])
CL Item
Unknown (UNK)
Virus_by_PCR
Item
Virus detected in nasal wash specimens collected during the first illness visit, RT-PCR assay
string
C1294356 (UMLS CUI [1,1])
C0206289 (UMLS CUI [1,2])
C0221423 (UMLS CUI [1,3])
C0599161 (UMLS CUI [1,4])
Medications
Item
Antiviral drug taken by the subjects
string
C0003451 (UMLS CUI [1,1])
C1705169 (UMLS CUI [1,2])
Oral_temperature
Item
Maximum oral temperature on the first day of illness
float
C0005903 (UMLS CUI [1,1])
C0442027 (UMLS CUI [1,2])
C1442880 (UMLS CUI [1,3])
Duration
Item
Duration of symptoms
text
C0449238 (UMLS CUI [1,1])
C1457887 (UMLS CUI [1,2])
HAI_H1N1_Baseline
Item
Log2 antibody titer, hemagglutination inhibition assay; H1N1 antigen; baseline
float
C1883661 (UMLS CUI [1,1])
C0474643 (UMLS CUI [1,2])
C0018904 (UMLS CUI [1,3])
C4033624 (UMLS CUI [1,4])
C1442488 (UMLS CUI [1,5])
HAI_H1N1_Acute_Infection
Item
Log2 antibody titer, hemagglutination inhibition assay; H1N1 antigen; acute infection
float
C1883661 (UMLS CUI [1,1])
C0474643 (UMLS CUI [1,2])
C0018904 (UMLS CUI [1,3])
C4033624 (UMLS CUI [1,4])
C0275518 (UMLS CUI [1,5])
HAI_H1N1_Convalescent
Item
Log2 antibody titer, hemagglutination inhibition assay; H1N1 antigen; convalescent
float
C1883661 (UMLS CUI [1,1])
C0474643 (UMLS CUI [1,2])
C0018904 (UMLS CUI [1,3])
C4033624 (UMLS CUI [1,4])
C0740326 (UMLS CUI [1,5])
HAI_H1N1_Spring
Item
Log2 antibody titer, hemagglutination inhibition assay; H1N1 antigen; spring
float
C1883661 (UMLS CUI [1,1])
C0474643 (UMLS CUI [1,2])
C0018904 (UMLS CUI [1,3])
C4033624 (UMLS CUI [1,4])
C0241232 (UMLS CUI [1,5])
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