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This sample attributes data table includes body site where sample was collected, analyte type, tumor status, histological type, metastatic status, primary tumor location, tumor stage and grade, tumor treatment, and sequencing center.

6 Formulieren  
pht005217
Beschrijving

pht005217

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Beschrijving

SAMPLE_ID

Datatype

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Beschrijving

BODY_SITE

Datatype

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Beschrijving

ANALYTE_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Beschrijving

IS_TUMOR

Datatype

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Beschrijving

HISTOLOGICAL_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Primary tumor (Primary) or not applicable (N/A)
Beschrijving

PRIMARY_METASTATIC_TUMOR

Datatype

string

Alias
UMLS CUI [1,1]
C1272460
Primary tumor location
Beschrijving

PRIMARY_TUMOR_LOCATION

Datatype

string

Alias
UMLS CUI [1,1]
C0475447
Tumor stage of sample
Beschrijving

TUMOR_STAGE

Datatype

string

Alias
UMLS CUI [1,1]
C1300072
UMLS CUI [1,2]
C0370003
Tumor grade of sample
Beschrijving

TUMOR_GRADE

Datatype

string

Alias
UMLS CUI [1,1]
C0919553
UMLS CUI [1,2]
C0370003
Type of tumor treatment for sample
Beschrijving

TUMOR_TREATMENT

Datatype

string

Alias
UMLS CUI [1,1]
C0087111
UMLS CUI [1,2]
C0332307
UMLS CUI [1,3]
C0006826
UMLS CUI [1,4]
C2347026
Name of the center which conducted sequencing/source of raw data
Beschrijving

SEQUENCING_CENTER

Datatype

text

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C5575037
UMLS CUI [1,3]
C3640076
UMLS CUI [2,1]
C4684753
UMLS CUI [2,2]
C0011001
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Similar models

This sample attributes data table includes body site where sample was collected, analyte type, tumor status, histological type, metastatic status, primary tumor location, tumor stage and grade, tumor treatment, and sequencing center.

6 Formulieren
Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht005217
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (Y)
C0027651 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
PRIMARY_METASTATIC_TUMOR
Item
Primary tumor (Primary) or not applicable (N/A)
string
C1272460 (UMLS CUI [1,1])
PRIMARY_TUMOR_LOCATION
Item
Primary tumor location
string
C0475447 (UMLS CUI [1,1])
TUMOR_STAGE
Item
Tumor stage of sample
string
C1300072 (UMLS CUI [1,1])
C0370003 (UMLS CUI [1,2])
TUMOR_GRADE
Item
Tumor grade of sample
string
C0919553 (UMLS CUI [1,1])
C0370003 (UMLS CUI [1,2])
TUMOR_TREATMENT
Item
Type of tumor treatment for sample
string
C0087111 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
C0006826 (UMLS CUI [1,3])
C2347026 (UMLS CUI [1,4])
Item
Name of the center which conducted sequencing/source of raw data
text
C1301943 (UMLS CUI [1,1])
C5575037 (UMLS CUI [1,2])
C3640076 (UMLS CUI [1,3])
C4684753 (UMLS CUI [2,1])
C0011001 (UMLS CUI [2,2])
SEQUENCING_CENTER
Code List
Name of the center which conducted sequencing/source of raw data
CL Item
ERASMUS University Medical Center (1)
CL Item
Memorial Sloan Kettering Cancer Center (2)
CL Item
New York Genome Center (3)
CL Item
Epigenomics Core, Weill Cornell Medical College (4)
CL Item
EGA accession number EGAS00001000275 (5)
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