Inglés

The subject consent data table contains subject IDs, consent group information, and subject aliases.

6 formularios  
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. The subject consent data table contains subject IDs, consent group information, and subject aliases.
    3. This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    4. This subject phenotype table includes subject's sex, age at blood draw, and phenotype study (Amish Family HAPI Heart Study, Amish Family Longevity Study, and Amish Family Wellness Study). The variables collected at baseline visit are anthropometric measures (n=5; weight, height, bmi, whr, and waist), age, myocardial infarction, T2D, stroke, pregnancy status, CAC score and age, IMT thickness and plaque, EKG measures (n=4; QRS, QT, PR, and heart rate), inflammatory markers (n=4, fibrinogen, CRP, IL-6, Lpa), blood pressure (n=2, SBP and DBP), fasting insulin and glucose measures, blood measurements (n=10; WBC, hemoglobin, hematocrit, RBC, and platelets), metabolic measures (n=5; creatine, LDL, HDL, triglycerides, and total cholesterol), lung capacity (n=2; FVC and FEV), medications (n=3; hypertension, T2D, and lipid), and smoking status.
    5. This sample attributes table includes body site where sample was collected, histological type, analyte type, tumor status, sequencing center, funding source, TOPMed phase, study name, and project.
    6. The pedigree data table shows family relationships through family IDs, subject IDs, father IDs, mother IDs, twin IDs, gender, and second degree relationships.
pht005000
Descripción

pht005000

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Descripción

SUBJECT_ID

Tipo de datos

string

Alias
UMLS CUI [1,1]
C2348585
Consent group as determined by DAC
Descripción

CONSENT

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0021430
UMLS CUI [1,2]
C0441833
Subject also included in previous dbGaP submission
Descripción

SUBJECT_SOURCE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0681850
UMLS CUI [1,2]
C2700399
UMLS CUI [1,3]
C3846158
UMLS CUI [1,4]
C1515022
Previous dbGaP submission Subject ID
Descripción

SOURCE_SUBJECT_ID

Tipo de datos

string

Alias
UMLS CUI [1,1]
C3846158
UMLS CUI [1,2]
C1515022
UMLS CUI [1,3]
C2348585
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Similar models

The subject consent data table contains subject IDs, consent group information, and subject aliases.

6 formularios
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. The subject consent data table contains subject IDs, consent group information, and subject aliases.
    3. This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    4. This subject phenotype table includes subject's sex, age at blood draw, and phenotype study (Amish Family HAPI Heart Study, Amish Family Longevity Study, and Amish Family Wellness Study). The variables collected at baseline visit are anthropometric measures (n=5; weight, height, bmi, whr, and waist), age, myocardial infarction, T2D, stroke, pregnancy status, CAC score and age, IMT thickness and plaque, EKG measures (n=4; QRS, QT, PR, and heart rate), inflammatory markers (n=4, fibrinogen, CRP, IL-6, Lpa), blood pressure (n=2, SBP and DBP), fasting insulin and glucose measures, blood measurements (n=10; WBC, hemoglobin, hematocrit, RBC, and platelets), metabolic measures (n=5; creatine, LDL, HDL, triglycerides, and total cholesterol), lung capacity (n=2; FVC and FEV), medications (n=3; hypertension, T2D, and lipid), and smoking status.
    5. This sample attributes table includes body site where sample was collected, histological type, analyte type, tumor status, sequencing center, funding source, TOPMed phase, study name, and project.
    6. The pedigree data table shows family relationships through family IDs, subject IDs, father IDs, mother IDs, twin IDs, gender, and second degree relationships.
Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de datos
Alias
Item Group
pht005000
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
Item
Consent group as determined by DAC
text
C0021430 (UMLS CUI [1,1])
C0441833 (UMLS CUI [1,2])
CONSENT
Code List
Consent group as determined by DAC
CL Item
Subjects did not participate in the study, did not complete a consent document and are included only for the pedigree structure and/or genotype controls, such as HapMap subjects (0)
C5418626 (UMLS CUI [1,1])
C0549184 (UMLS CUI [1,2])
C0009797 (UMLS CUI [1,3])
C0205257 (UMLS CUI [1,4])
C2700399 (UMLS CUI [1,5])
C0030761 (UMLS CUI [1,6])
C5418626 (UMLS CUI [2,1])
C0549184 (UMLS CUI [2,2])
C0009797 (UMLS CUI [2,3])
C0205257 (UMLS CUI [2,4])
C2700399 (UMLS CUI [2,5])
C0017431 (UMLS CUI [2,6])
C4553389 (UMLS CUI [2,7])
CL Item
Health/Medical/Biomedical (IRB, MDS) (HMB-IRB-MDS) (2)
C0018684 (UMLS CUI [1,1])
C0205476 (UMLS CUI [1,2])
C1879848 (UMLS CUI [1,3])
SUBJECT_SOURCE
Item
Subject also included in previous dbGaP submission
string
C0681850 (UMLS CUI [1,1])
C2700399 (UMLS CUI [1,2])
C3846158 (UMLS CUI [1,3])
C1515022 (UMLS CUI [1,4])
SOURCE_SUBJECT_ID
Item
Previous dbGaP submission Subject ID
string
C3846158 (UMLS CUI [1,1])
C1515022 (UMLS CUI [1,2])
C2348585 (UMLS CUI [1,3])
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