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This sample attributes table includes body site where sample was collected, analyte type, tumor status, histological type, sequencing center, funding source, TOPMed phase, project, and study name.

4 Formulieren  
pht005052
Beschrijving

pht005052

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Beschrijving

SAMPLE_ID

Datatype

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Beschrijving

BODY_SITE

Datatype

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Beschrijving

ANALYTE_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Beschrijving

IS_TUMOR

Datatype

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Beschrijving

HISTOLOGICAL_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Name of the center which conducted sequencing
Beschrijving

SEQUENCING_CENTER

Datatype

text

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C5575037
UMLS CUI [1,3]
C1294197
Funding Source
Beschrijving

Funding_Source

Datatype

string

Alias
UMLS CUI [1,1]
C0681806
TOPMed Phase for Whole Genome Sequencing
Beschrijving

TOPMed_Phase

Datatype

text

Alias
UMLS CUI [1,1]
C3640076
UMLS CUI [1,2]
C0205390
UMLS CUI [1,3]
C3846158
TOPMed Project
Beschrijving

TOPMed_Project

Datatype

string

Alias
UMLS CUI [1,1]
C0700032
TOPMed Participating Study Name
Beschrijving

Study_Name

Datatype

string

Alias
UMLS CUI [1,1]
C3274381
UMLS CUI [1,2]
C3846158
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Similar models

This sample attributes table includes body site where sample was collected, analyte type, tumor status, histological type, sequencing center, funding source, TOPMed phase, project, and study name.

4 Formulieren
Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht005052
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (Y)
C0027651 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
Item
Name of the center which conducted sequencing
text
C1301943 (UMLS CUI [1,1])
C5575037 (UMLS CUI [1,2])
C1294197 (UMLS CUI [1,3])
SEQUENCING_CENTER
Code List
Name of the center which conducted sequencing
CL Item
Broad Institute (BROAD)
C4764268 (UMLS CUI [1,1])
CL Item
University of Washington (UW)
C0041740 (UMLS CUI [1,1])
C0043038 (UMLS CUI [1,2])
Funding_Source
Item
Funding Source
string
C0681806 (UMLS CUI [1,1])
TOPMed_Phase
Item
TOPMed Phase for Whole Genome Sequencing
text
C3640076 (UMLS CUI [1,1])
C0205390 (UMLS CUI [1,2])
C3846158 (UMLS CUI [1,3])
TOPMed_Project
Item
TOPMed Project
string
C0700032 (UMLS CUI [1,1])
Study_Name
Item
TOPMed Participating Study Name
string
C3274381 (UMLS CUI [1,1])
C3846158 (UMLS CUI [1,2])
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