English

This sample attributes table includes body site where sample was collected, analyte type, tumor status, histological type, sequencing center, funding source, TOPMed phase, project, and study name.

4 forms  
pht005052
Description

pht005052

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Description

SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Description

IS_TUMOR

Data type

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Description

HISTOLOGICAL_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Name of the center which conducted sequencing
Description

SEQUENCING_CENTER

Data type

text

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C5575037
UMLS CUI [1,3]
C1294197
Funding Source
Description

Funding_Source

Data type

string

Alias
UMLS CUI [1,1]
C0681806
TOPMed Phase for Whole Genome Sequencing
Description

TOPMed_Phase

Data type

text

Alias
UMLS CUI [1,1]
C3640076
UMLS CUI [1,2]
C0205390
UMLS CUI [1,3]
C3846158
TOPMed Project
Description

TOPMed_Project

Data type

string

Alias
UMLS CUI [1,1]
C0700032
TOPMed Participating Study Name
Description

Study_Name

Data type

string

Alias
UMLS CUI [1,1]
C3274381
UMLS CUI [1,2]
C3846158
Back to the top of the page

Similar models

This sample attributes table includes body site where sample was collected, analyte type, tumor status, histological type, sequencing center, funding source, TOPMed phase, project, and study name.

4 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht005052
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (Y)
C0027651 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
Item
Name of the center which conducted sequencing
text
C1301943 (UMLS CUI [1,1])
C5575037 (UMLS CUI [1,2])
C1294197 (UMLS CUI [1,3])
SEQUENCING_CENTER
Code List
Name of the center which conducted sequencing
CL Item
Broad Institute (BROAD)
C4764268 (UMLS CUI [1,1])
CL Item
University of Washington (UW)
C0041740 (UMLS CUI [1,1])
C0043038 (UMLS CUI [1,2])
Funding_Source
Item
Funding Source
string
C0681806 (UMLS CUI [1,1])
TOPMed_Phase
Item
TOPMed Phase for Whole Genome Sequencing
text
C3640076 (UMLS CUI [1,1])
C0205390 (UMLS CUI [1,2])
C3846158 (UMLS CUI [1,3])
TOPMed_Project
Item
TOPMed Project
string
C0700032 (UMLS CUI [1,1])
Study_Name
Item
TOPMed Participating Study Name
string
C3274381 (UMLS CUI [1,1])
C3846158 (UMLS CUI [1,2])
Back to the top of the page