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This MGH AF Resequencing sample attributes table includes body site where sample was collected, analyte type, and tumor status.

8 forms  
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. The subject consent data table contains subject IDs, consent group information, subject aliases, and affection status for atrial fibrillation (AF).
    3. This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use and substudy accession.
    4. This subject phenotype data table includes subject's sex, race, ethnicity, atrial fibrillation status, age of diagnosis, status at enrollment for age, height, weight, hypertension, diabetes, heart failure, and myocardial infarction. Measurements included are cholesterol (TC, HDL, LDL, and triglycerides) and echocardiogram (PR, QRS, and QT intervals).
    5. This MGH AF CHARGE-S sample attributes table includes body site where sample was collected, analyte type, and tumor status.
    6. This MGH Exome Sequencing in Early AF sample attributes table includes body site where sample was collected, analyte type, and tumor status.
    7. This MGH AF Resequencing sample attributes table includes body site where sample was collected, analyte type, and tumor status.
    8. This pedigree data table contains family relationships in the format of family IDs, subject IDs, father IDs, mother IDs, and sex of subjects.
pht005674
Description

pht005674

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Description

SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Description

IS_TUMOR

Data type

text

Alias
UMLS CUI [1,1]
C0475752
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Similar models

This MGH AF Resequencing sample attributes table includes body site where sample was collected, analyte type, and tumor status.

8 forms
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. The subject consent data table contains subject IDs, consent group information, subject aliases, and affection status for atrial fibrillation (AF).
    3. This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use and substudy accession.
    4. This subject phenotype data table includes subject's sex, race, ethnicity, atrial fibrillation status, age of diagnosis, status at enrollment for age, height, weight, hypertension, diabetes, heart failure, and myocardial infarction. Measurements included are cholesterol (TC, HDL, LDL, and triglycerides) and echocardiogram (PR, QRS, and QT intervals).
    5. This MGH AF CHARGE-S sample attributes table includes body site where sample was collected, analyte type, and tumor status.
    6. This MGH Exome Sequencing in Early AF sample attributes table includes body site where sample was collected, analyte type, and tumor status.
    7. This MGH AF Resequencing sample attributes table includes body site where sample was collected, analyte type, and tumor status.
    8. This pedigree data table contains family relationships in the format of family IDs, subject IDs, father IDs, mother IDs, and sex of subjects.
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht005674
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (No)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
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