English

This sample attributes table contains sample IDs, body site where sample was collected, analyte type, tumor status, histological type, laterality of the breast, quadrant of the breast, estrogen receptor status, progesterone receptor status, HER2 status, and name of the center which conducted sequencing.

5 forms  
pht006004
Description

pht006004

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Description

SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Description

IS_TUMOR

Data type

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Description

HISTOLOGICAL_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Laterality of the breast
Description

LATERALITY

Data type

text

Alias
UMLS CUI [1,1]
C0925205
UMLS CUI [1,2]
C0006141
Quadrant of the breast
Description

QUADRANT_BREAST

Data type

text

Alias
UMLS CUI [1,1]
C0447660
Estrogen receptor status
Description

ESTROGEN_RECEPTOR_STATUS

Data type

text

Alias
UMLS CUI [1,1]
C2919271
Progesterone receptor status
Description

PROGESTERONE_RECEPTOR_STATUS

Data type

text

HER2 status
Description

HER2_STATUS

Data type

text

Name of the center which conducted sequencing
Description

SEQUENCING_CENTER

Data type

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C5575037
UMLS CUI [1,3]
C1294197
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Similar models

This sample attributes table contains sample IDs, body site where sample was collected, analyte type, tumor status, histological type, laterality of the breast, quadrant of the breast, estrogen receptor status, progesterone receptor status, HER2 status, and name of the center which conducted sequencing.

5 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht006004
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (Y)
C0027651 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
Item
Laterality of the breast
text
C0925205 (UMLS CUI [1,1])
C0006141 (UMLS CUI [1,2])
LATERALITY
Code List
Laterality of the breast
CL Item
Left breast (Left)
C0222601 (UMLS CUI [1,1])
C0222600 (UMLS CUI [1,2])
CL Item
Not applicable (N/A)
C1272460 (UMLS CUI [1,1])
CL Item
Right breast (Right)
Item
Quadrant of the breast
text
C0447660 (UMLS CUI [1,1])
QUADRANT_BREAST
Code List
Quadrant of the breast
CL Item
Lower inner quadrant (LIQ)
C0222597 (UMLS CUI [1,1])
CL Item
Lower outer quadrant (LOQ)
C0222599 (UMLS CUI [1,1])
CL Item
Not applicalble (N/A)
C1272460 (UMLS CUI [1,1])
CL Item
Upper inner quadrant (UIQ)
C0222596 (UMLS CUI [1,1])
CL Item
Upper outer quadrant (UOQ)
C0222598 (UMLS CUI [1,1])
Item
Estrogen receptor status
text
C2919271 (UMLS CUI [1,1])
ESTROGEN_RECEPTOR_STATUS
Code List
Estrogen receptor status
CL Item
Not applicable (N/A)
C1272460 (UMLS CUI [1,1])
CL Item
Not performed (NP)
C1272696 (UMLS CUI [1,1])
CL Item
ER negative (Negative)
C0279756 (UMLS CUI [1,1])
CL Item
ER positive (Positive)
C0279754 (UMLS CUI [1,1])
Item
Progesterone receptor status
text
PROGESTERONE_RECEPTOR_STATUS
Code List
Progesterone receptor status
CL Item
Not applicable (N/A)
C1272460 (UMLS CUI [1,1])
CL Item
Not performed (NP)
C1272696 (UMLS CUI [1,1])
CL Item
PR negative (Negative)
C0279766 (UMLS CUI [1,1])
CL Item
PR positive (Positive)
C0279759 (UMLS CUI [1,1])
Item
HER2 status
text
HER2_STATUS
Code List
HER2 status
CL Item
Not applicable (N/A)
C1272460 (UMLS CUI [1,1])
CL Item
Not performed (NP)
C1272696 (UMLS CUI [1,1])
CL Item
HER2 negative (Negative)
C5238910 (UMLS CUI [1,1])
CL Item
HER2 positive (Positive)
C1960398 (UMLS CUI [1,1])
SEQUENCING_CENTER
Item
Name of the center which conducted sequencing
string
C1301943 (UMLS CUI [1,1])
C5575037 (UMLS CUI [1,2])
C1294197 (UMLS CUI [1,3])
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