Inglese

This sample attributes table informs of body site where sample was collected, sample analyte type, sample tumor status, sample histology, whether 30X mean coverage was achieved in the sample during sequencing, and site where sequencing took place.

5 moduli  
pht005784
Descrizione

pht005784

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Descrizione

SAMPID

Tipo di dati

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Descrizione

BODY_SITE

Tipo di dati

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Descrizione

ANALYTE_TYPE

Tipo di dati

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Descrizione

IS_TUMOR

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Descrizione

HISTOLOGICAL_TYPE

Tipo di dati

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [1,4]
C0449560
UMLS CUI [1,5]
C1292533
Samples meeting 30X mean coverage encoded value
Descrizione

Coverage_Pass

Tipo di dati

text

Alias
UMLS CUI [1,1]
C1294197
UMLS CUI [1,2]
C4743987
UMLS CUI [1,3]
C3816446
Site where sequencing occurred
Descrizione

SITE

Tipo di dati

string

Alias
UMLS CUI [1,1]
C5667250
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Similar models

This sample attributes table informs of body site where sample was collected, sample analyte type, sample tumor status, sample histology, whether 30X mean coverage was achieved in the sample during sequencing, and site where sequencing took place.

5 moduli
Name
genere
Description | Question | Decode (Coded Value)
Tipo di dati
Alias
Item Group
pht005784
C3846158 (UMLS CUI [1,1])
SAMPID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
BODY_SITE
Code List
Body site where sample was collected
CL Item
BLOOD (BLOOD)
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
ANALYTE_TYPE
Code List
Analyte Type
CL Item
DNA (DNA)
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C0449560 (UMLS CUI [1,4])
C1292533 (UMLS CUI [1,5])
HISTOLOGICAL_TYPE
Code List
Cell or tissue type or subtype of sample
CL Item
BLOOD (BLOOD)
Item
Samples meeting 30X mean coverage encoded value
text
C1294197 (UMLS CUI [1,1])
C4743987 (UMLS CUI [1,2])
C3816446 (UMLS CUI [1,3])
Coverage_Pass
Code List
Samples meeting 30X mean coverage encoded value
CL Item
not provided (Missing)
CL Item
No (N)
CL Item
Yes (Y)
SITE
Item
Site where sequencing occurred
string
C5667250 (UMLS CUI [1,1])
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