Inglés

This sample attributes table includes body site where sample was collected, analyte type, tumor status, histological type, sample batch (RNA extraction and library creation batch, and sequencing pool), RIN, genotyping and sequencing centers, starting mass of sample, sample use, sample inclusion in analysis, and reason for not including.

5 formularios  
pht008898
Descripción

pht008898

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Descripción

SAMPLE_ID

Tipo de datos

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Descripción

BODY_SITE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Descripción

ANALYTE_TYPE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Descripción

IS_TUMOR

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Descripción

HISTOLOGICAL_TYPE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
RNA extraction and library creation batch; sequencing pool
Descripción

BATCH

Tipo de datos

string

Alias
UMLS CUI [1,1]
C3839010
UMLS CUI [1,2]
C0599776
UMLS CUI [1,3]
C1294197
RNA Integrity Number
Descripción

RIN

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1882531
Name of the center which conducted genotyping
Descripción

GENOTYPING_CENTER

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C5575037
UMLS CUI [1,3]
C1285573
Name of the center which conducted sequencing
Descripción

SEQUENCING_CENTER

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C5575037
UMLS CUI [1,3]
C1561491
Starting mass of sample used
Descripción

MASS

Tipo de datos

string

Unidades de medida
  • mg
Alias
UMLS CUI [1,1]
C1306372
UMLS CUI [1,2]
C0439659
UMLS CUI [1,3]
C2347026
UMLS CUI [1,4]
C1524063
mg
Fusion use
Descripción

FUSION_USE

Tipo de datos

text

Alias
UMLS CUI [1,1]
C1293131
UMLS CUI [1,2]
C0042153
UMLS CUI [1,3]
C2347026
Used for analysis or not
Descripción

USE_ME

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0042153
UMLS CUI [1,2]
C0936012
UMLS CUI [1,3]
C1512698
Reason not used for analysis
Descripción

REASON

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1550356
UMLS CUI [1,2]
C0445107
UMLS CUI [1,3]
C0936012
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Similar models

This sample attributes table includes body site where sample was collected, analyte type, tumor status, histological type, sample batch (RNA extraction and library creation batch, and sequencing pool), RIN, genotyping and sequencing centers, starting mass of sample, sample use, sample inclusion in analysis, and reason for not including.

5 formularios
Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de datos
Alias
Item Group
pht008898
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Not a tumor (N)
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
BATCH
Item
RNA extraction and library creation batch; sequencing pool
string
C3839010 (UMLS CUI [1,1])
C0599776 (UMLS CUI [1,2])
C1294197 (UMLS CUI [1,3])
RIN
Item
RNA Integrity Number
string
C1882531 (UMLS CUI [1,1])
GENOTYPING_CENTER
Item
Name of the center which conducted genotyping
string
C1301943 (UMLS CUI [1,1])
C5575037 (UMLS CUI [1,2])
C1285573 (UMLS CUI [1,3])
SEQUENCING_CENTER
Item
Name of the center which conducted sequencing
string
C1301943 (UMLS CUI [1,1])
C5575037 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
MASS
Item
Starting mass of sample used
string
C1306372 (UMLS CUI [1,1])
C0439659 (UMLS CUI [1,2])
C2347026 (UMLS CUI [1,3])
C1524063 (UMLS CUI [1,4])
Item
Fusion use
text
C1293131 (UMLS CUI [1,1])
C0042153 (UMLS CUI [1,2])
C2347026 (UMLS CUI [1,3])
FUSION_USE
Code List
Fusion use
CL Item
DNA_wgbs (DNA_wgbs)
CL Item
DNA_wgs (DNA_wgs)
CL Item
Omni2.5M_chip_genotype (Omni2.5M_chip_genotype)
CL Item
atac_seq (atac_seq)
CL Item
epic_chip (epic_chip)
CL Item
imputed_genotype (imputed_genotype)
CL Item
miRNA_seq (miRNA_seq)
CL Item
rna_seq (rna_seq)
Item
Used for analysis or not
text
C0042153 (UMLS CUI [1,1])
C0936012 (UMLS CUI [1,2])
C1512698 (UMLS CUI [1,3])
USE_ME
Code List
Used for analysis or not
CL Item
Not used for analysis (0)
CL Item
Used for analysis (1)
REASON
Item
Reason not used for analysis
string
C1550356 (UMLS CUI [1,1])
C0445107 (UMLS CUI [1,2])
C0936012 (UMLS CUI [1,3])
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