This subject phenotype table contains subject ID, pathological complete response in breast and nodes, clinical molecular tumor type, tumor stage, nodal stage, lab estimate of tumor percentage at baseline, Ki67 sensitivity, estrogen and progesterone receptor level, HER2 results by IHC or Fish, and patient age.

pht005233
Beschrijving

pht005233

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Beschrijving

Subject_ID

Datatype

string

Alias
UMLS CUI [1,1]
C2348585
Pathological complete response in breast and nodes (path-CR) after 24 weeks of chemo-therapy or the patient's regimen.
Beschrijving

Breast.Nodal.CR.all

Datatype

string

Alias
UMLS CUI [1,1]
C0807321
UMLS CUI [1,2]
C4318559
UMLS CUI [1,3]
C4296167
UMLS CUI [1,4]
C0006141
Clinical molecular tumor type, based on baseline Ki67 results, estrogen receptor level and HER2 status (by IHC or FISH)
Beschrijving

Clinical.Molecular.Subtype

Datatype

string

Alias
UMLS CUI [1,1]
C0205210
UMLS CUI [1,2]
C4263544
UMLS CUI [1,3]
C1521991
UMLS CUI [1,4]
C4049944
UMLS CUI [1,5]
C0034804
UMLS CUI [1,6]
C1512413
UMLS CUI [1,7]
C0021044
UMLS CUI [1,8]
C0162789
Tumor stage, based on size and spread to skin or chest wall under breast
Beschrijving

T.stage

Datatype

string

Alias
UMLS CUI [1,1]
C1300072
UMLS CUI [1,2]
C0456389
UMLS CUI [1,3]
C0347065
UMLS CUI [1,4]
C1123023
UMLS CUI [1,5]
C0205076
Nodal stage, based on if tumor spread to lymph nodes by breast and, if so, how many nodes are affected
Beschrijving

N.stage

Datatype

string

Alias
UMLS CUI [1,1]
C0456532
Lab estimate of tumor percentage at baseline
Beschrijving

Percentage.tumor.cells.baseline

Datatype

text

Alias
UMLS CUI [1,1]
C0750572
UMLS CUI [1,2]
C5237816
UMLS CUI [1,3]
C1254595
Was tumor sensitive to chemo decreasing significantly by Ki67 measure?
Beschrijving

Ki67Sensitivity

Datatype

string

Alias
UMLS CUI [1,1]
C0006826
UMLS CUI [1,2]
C0475276
UMLS CUI [1,3]
C3854147
UMLS CUI [1,4]
C4049944
Estrogen Receptor level
Beschrijving

Estrogen.receptor

Datatype

string

Alias
UMLS CUI [1,1]
C2919271
Progesterone Receptor level
Beschrijving

Progesterone.receptor

Datatype

string

Alias
UMLS CUI [1,1]
C2919590
HER2 results by IHC
Beschrijving

HER2.IHC

Datatype

string

Alias
UMLS CUI [1,1]
C1512413
UMLS CUI [1,2]
C0021044
HER2 results by Fish
Beschrijving

HER2.FISH

Datatype

string

Alias
UMLS CUI [1,1]
C0162789
UMLS CUI [1,2]
C1512413
Patient age at date on study, marked in 10 year group
Beschrijving

Age.group

Datatype

string

Maateenheden
  • years
Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [1,2]
C2348558
years

Similar models

This subject phenotype table contains subject ID, pathological complete response in breast and nodes, clinical molecular tumor type, tumor stage, nodal stage, lab estimate of tumor percentage at baseline, Ki67 sensitivity, estrogen and progesterone receptor level, HER2 results by IHC or Fish, and patient age.

Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht005233
C3846158 (UMLS CUI [1,1])
Subject_ID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
Breast.Nodal.CR.all
Item
Pathological complete response in breast and nodes (path-CR) after 24 weeks of chemo-therapy or the patient's regimen.
string
C0807321 (UMLS CUI [1,1])
C4318559 (UMLS CUI [1,2])
C4296167 (UMLS CUI [1,3])
C0006141 (UMLS CUI [1,4])
Clinical.Molecular.Subtype
Item
Clinical molecular tumor type, based on baseline Ki67 results, estrogen receptor level and HER2 status (by IHC or FISH)
string
C0205210 (UMLS CUI [1,1])
C4263544 (UMLS CUI [1,2])
C1521991 (UMLS CUI [1,3])
C4049944 (UMLS CUI [1,4])
C0034804 (UMLS CUI [1,5])
C1512413 (UMLS CUI [1,6])
C0021044 (UMLS CUI [1,7])
C0162789 (UMLS CUI [1,8])
T.stage
Item
Tumor stage, based on size and spread to skin or chest wall under breast
string
C1300072 (UMLS CUI [1,1])
C0456389 (UMLS CUI [1,2])
C0347065 (UMLS CUI [1,3])
C1123023 (UMLS CUI [1,4])
C0205076 (UMLS CUI [1,5])
N.stage
Item
Nodal stage, based on if tumor spread to lymph nodes by breast and, if so, how many nodes are affected
string
C0456532 (UMLS CUI [1,1])
Percentage.tumor.cells.baseline
Item
Lab estimate of tumor percentage at baseline
text
C0750572 (UMLS CUI [1,1])
C5237816 (UMLS CUI [1,2])
C1254595 (UMLS CUI [1,3])
Ki67Sensitivity
Item
Was tumor sensitive to chemo decreasing significantly by Ki67 measure?
string
C0006826 (UMLS CUI [1,1])
C0475276 (UMLS CUI [1,2])
C3854147 (UMLS CUI [1,3])
C4049944 (UMLS CUI [1,4])
Estrogen.receptor
Item
Estrogen Receptor level
string
C2919271 (UMLS CUI [1,1])
Progesterone.receptor
Item
Progesterone Receptor level
string
C2919590 (UMLS CUI [1,1])
HER2.IHC
Item
HER2 results by IHC
string
C1512413 (UMLS CUI [1,1])
C0021044 (UMLS CUI [1,2])
HER2.FISH
Item
HER2 results by Fish
string
C0162789 (UMLS CUI [1,1])
C1512413 (UMLS CUI [1,2])
Age.group
Item
Patient age at date on study, marked in 10 year group
string
C0001779 (UMLS CUI [1,1])
C2348558 (UMLS CUI [1,2])