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This sample attributes table contains sample IDs, analyte type, body site where sample was collected, tumor status, primary metastatic tumor, primary tumor location, DNA isolation method, sequencing platform, chemistry version, and name of the center which conducted genotyping.

5 Formulär  
pht006839
Beskrivning

pht006839

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Beskrivning

SAMPLE_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Analyte Type
Beskrivning

Analyte

Datatyp

string

Alias
UMLS CUI [1,1]
C4744818
Body site where sample was collected
Beskrivning

Body Site

Datatyp

text

Alias
UMLS CUI [1,1]
C0449705
Tumor status
Beskrivning

Is Tumor

Datatyp

text

Alias
UMLS CUI [1,1]
C0475752
Primary tumor, metastasis, or transformed cell line
Beskrivning

Primary Metastatic Tumor

Datatyp

text

Alias
UMLS CUI [1,1]
C0677930
UMLS CUI [2,1]
C0027627
UMLS CUI [3,1]
C0007601
Primary tumor location
Beskrivning

Primary Tumor Location

Datatyp

text

Alias
UMLS CUI [1,1]
C0475447
DNA Isolation Method
Beskrivning

DNA Isolation Method

Datatyp

string

Alias
UMLS CUI [1,1]
C0012854
UMLS CUI [1,2]
C0220862
Sequencing Platform
Beskrivning

Sequencing Platform

Datatyp

string

Alias
UMLS CUI [1,1]
C5401061
Illumina Sequencing Chemistry Version
Beskrivning

Chemistry Version

Datatyp

text

Alias
UMLS CUI [1,1]
C4687476
UMLS CUI [1,2]
C0333052
Name of the center which conducted genotyping
Beskrivning

Sequencing Center

Datatyp

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C1285573
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Similar models

This sample attributes table contains sample IDs, analyte type, body site where sample was collected, tumor status, primary metastatic tumor, primary tumor location, DNA isolation method, sequencing platform, chemistry version, and name of the center which conducted genotyping.

5 Formulär
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht006839
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
Analyte
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Body site where sample was collected
text
C0449705 (UMLS CUI [1,1])
Body Site
Code List
Body site where sample was collected
CL Item
Fresh Frozen Prostatic Adenocarcinoma (Fresh Frozen Prostatic Adenocarcinoma)
CL Item
Fresh Frozen Prostatectomy (Fresh Frozen Prostatectomy)
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
Is Tumor
Code List
Tumor status
CL Item
Is tumor (Y)
C0027651 (UMLS CUI [1,1])
CL Item
Is not tumor (N)
Item
Primary tumor, metastasis, or transformed cell line
text
C0677930 (UMLS CUI [1,1])
C0027627 (UMLS CUI [2,1])
C0007601 (UMLS CUI [3,1])
Primary Metastatic Tumor
Code List
Primary tumor, metastasis, or transformed cell line
CL Item
Not tumor (NA)
CL Item
Primary Tumor (Primary)
CL Item
Metastatic lesion (Metastatic)
Item
Primary tumor location
text
C0475447 (UMLS CUI [1,1])
Primary Tumor Location
Code List
Primary tumor location
CL Item
Not Tumor (NA)
CL Item
Prostate (Prostate)
DNA Isolation Method
Item
DNA Isolation Method
string
C0012854 (UMLS CUI [1,1])
C0220862 (UMLS CUI [1,2])
Sequencing Platform
Item
Sequencing Platform
string
C5401061 (UMLS CUI [1,1])
Chemistry Version
Item
Illumina Sequencing Chemistry Version
text
C4687476 (UMLS CUI [1,1])
C0333052 (UMLS CUI [1,2])
Sequencing Center
Item
Name of the center which conducted genotyping
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1285573 (UMLS CUI [1,3])
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