English

This subject phenotype table contains subject IDs, family history of prostate cancer, ages at diagnosis and at surgery, prostate specific antigen (PSA) at diagnosis, treatment prior to surgey, lymphadenectomy, pathology Gleason score, pathology primary and secondary Gleason grades, total number of lymph nodes examined, number of positive lymph nodes, and estimated tumor volume (cc).

5 forms  
pht006838
Description

pht006838

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Description

SUBJECT_ID

Data type

string

Alias
UMLS CUI [1,1]
C2348585
Family History of Prostate Cancer
Description

Family history

Data type

text

Alias
UMLS CUI [1,1]
C0241889
UMLS CUI [1,2]
C0600139
Age at Diagnosis
Description

Age at diagnosis

Data type

text

Measurement units
  • years
Alias
UMLS CUI [1,1]
C1828181
years
Earliest prostate specific antigen (PSA)
Description

PSA at Daignosis (or closest)

Data type

float

Measurement units
  • mg/dL
Alias
UMLS CUI [1,1]
C1279919
UMLS CUI [1,2]
C0201544
mg/dL
Treatment Before Sample Collection
Description

Treatment Prior to Surgery

Data type

text

Alias
UMLS CUI [1,1]
C0087111
UMLS CUI [1,2]
C0332152
UMLS CUI [1,3]
C0200345
Age at Surgery
Description

Age at Surgery

Data type

text

Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [1,2]
C0011008
UMLS CUI [1,3]
C0543467
Lymphadenectomy
Description

Lymphadenectomy

Data type

text

Alias
UMLS CUI [1,1]
C0024203
Path Gleason Score
Description

Path Gleason Score

Data type

text

Alias
UMLS CUI [1,1]
C3203027
UMLS CUI [1,2]
C1521733
UMLS CUI [1,3]
C0243095
Path Primary Gleason Grade
Description

Path Primary Gleason Grade

Data type

text

Alias
UMLS CUI [1,1]
C0205225
UMLS CUI [1,2]
C3203027
UMLS CUI [1,3]
C1521733
UMLS CUI [1,4]
C0243095
Path Secondary Gleason Grade
Description

Path Secondary Gleason Grade

Data type

text

Alias
UMLS CUI [1,1]
C1273605
UMLS CUI [1,2]
C1521733
UMLS CUI [1,3]
C0243095
Total # L. Nodes Exam
Description

Total # L. Nodes Exam

Data type

text

Alias
UMLS CUI [1,1]
C0439810
UMLS CUI [1,2]
C0750480
UMLS CUI [1,3]
C0332128
UMLS CUI [1,4]
C0024204
# Pos. L. Nodes
Description

# Pos. L. Nodes

Data type

text

Alias
UMLS CUI [1,1]
C1446409
UMLS CUI [1,2]
C0024204
UMLS CUI [1,3]
C0750480
Est. Tumor vol. (cc)
Description

Est. Tumor vol(cc)

Data type

float

Measurement units
  • cc
Alias
UMLS CUI [1,1]
C0750572
UMLS CUI [1,2]
C0475276
cc
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Similar models

This subject phenotype table contains subject IDs, family history of prostate cancer, ages at diagnosis and at surgery, prostate specific antigen (PSA) at diagnosis, treatment prior to surgey, lymphadenectomy, pathology Gleason score, pathology primary and secondary Gleason grades, total number of lymph nodes examined, number of positive lymph nodes, and estimated tumor volume (cc).

5 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht006838
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
Item
Family History of Prostate Cancer
text
C0241889 (UMLS CUI [1,1])
C0600139 (UMLS CUI [1,2])
Family history
Code List
Family History of Prostate Cancer
CL Item
family history of prostate cancer (Yes)
Age at diagnosis
Item
Age at Diagnosis
text
C1828181 (UMLS CUI [1,1])
PSA at Daignosis (or closest)
Item
Earliest prostate specific antigen (PSA)
float
C1279919 (UMLS CUI [1,1])
C0201544 (UMLS CUI [1,2])
Item
Treatment Before Sample Collection
text
C0087111 (UMLS CUI [1,1])
C0332152 (UMLS CUI [1,2])
C0200345 (UMLS CUI [1,3])
Treatment Prior to Surgery
Code List
Treatment Before Sample Collection
CL Item
No treatment prior to sample collection (No)
Age at Surgery
Item
Age at Surgery
text
C0001779 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0543467 (UMLS CUI [1,3])
Item
Lymphadenectomy
text
C0024203 (UMLS CUI [1,1])
Lymphadenectomy
Code List
Lymphadenectomy
CL Item
Lymphadenectomy was performed (Yes)
Path Gleason Score
Item
Path Gleason Score
text
C3203027 (UMLS CUI [1,1])
C1521733 (UMLS CUI [1,2])
C0243095 (UMLS CUI [1,3])
Path Primary Gleason Grade
Item
Path Primary Gleason Grade
text
C0205225 (UMLS CUI [1,1])
C3203027 (UMLS CUI [1,2])
C1521733 (UMLS CUI [1,3])
C0243095 (UMLS CUI [1,4])
Path Secondary Gleason Grade
Item
Path Secondary Gleason Grade
text
C1273605 (UMLS CUI [1,1])
C1521733 (UMLS CUI [1,2])
C0243095 (UMLS CUI [1,3])
Total # L. Nodes Exam
Item
Total # L. Nodes Exam
text
C0439810 (UMLS CUI [1,1])
C0750480 (UMLS CUI [1,2])
C0332128 (UMLS CUI [1,3])
C0024204 (UMLS CUI [1,4])
# Pos. L. Nodes
Item
# Pos. L. Nodes
text
C1446409 (UMLS CUI [1,1])
C0024204 (UMLS CUI [1,2])
C0750480 (UMLS CUI [1,3])
Est. Tumor vol(cc)
Item
Est. Tumor vol. (cc)
float
C0750572 (UMLS CUI [1,1])
C0475276 (UMLS CUI [1,2])
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