Engelsk

This sample attributes table contains sample IDs, manuscript patient IDs, sample type, sequencing WGS coverage, estimated tumor purity using method outlined in publication, shorthand sample ID used in publication text and figures, tumor location and measurements (n=4 variables; length, width, depth and Fuhrman grade) , name of the center which conducted sequencing, and analyte type.

5 Formulär  
pht005491
Beskrivning

pht005491

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Beskrivning

SAMPLE_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
De-identified Patient ID used in the manuscript
Beskrivning

MANUSCRIPT_PATIENT_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1269815
UMLS CUI [1,3]
C4704799
Sample Type
Beskrivning

SAMPLE_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C2347029
Sequencing WGS coverage
Beskrivning

COVERAGE

Datatyp

float

Alias
UMLS CUI [1,1]
C3640077
UMLS CUI [1,2]
C3846158
Estimated tumor purity using method outlined in publication
Beskrivning

EST_PURITY

Datatyp

string

Alias
UMLS CUI [1,1]
C0750572
UMLS CUI [1,2]
C0027651
UMLS CUI [1,3]
C1882508
UMLS CUI [1,4]
C2911685
UMLS CUI [1,5]
C1704324
Shorthand sample ID used in publication text and figures
Beskrivning

SAMPLE_FIGURE_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C0037001
UMLS CUI [1,2]
C1299222
UMLS CUI [1,3]
C1704324
UMLS CUI [1,4]
C1527021
UMLS CUI [1,5]
C3846158
Tumor length
Beskrivning

TUMOR_LENGTH_CM

Datatyp

string

Alias
UMLS CUI [1,1]
C0027651
UMLS CUI [1,2]
C1444754
Tumor width
Beskrivning

TUMOR_WIDTH_CM

Datatyp

string

Alias
UMLS CUI [1,1]
C0027651
UMLS CUI [1,2]
C0487742
Tumor depth
Beskrivning

TUMOR_DEPTH_CM

Datatyp

string

Alias
UMLS CUI [1,1]
C0027651
UMLS CUI [1,2]
C0205125
Fuhrman grade of tumor
Beskrivning

FUHRMAN_GRADE

Datatyp

string

Alias
UMLS CUI [1,1]
C1300581
Location of tumor in body
Beskrivning

PRIMARY_TUMOR_LOCATION

Datatyp

string

Alias
UMLS CUI [1,1]
C0872338
Name of the center which conducted sequencing
Beskrivning

SEQUENCING_CENTER

Datatyp

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C1561491
Analyte type
Beskrivning

ANALYTE_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C4744818
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Similar models

This sample attributes table contains sample IDs, manuscript patient IDs, sample type, sequencing WGS coverage, estimated tumor purity using method outlined in publication, shorthand sample ID used in publication text and figures, tumor location and measurements (n=4 variables; length, width, depth and Fuhrman grade) , name of the center which conducted sequencing, and analyte type.

5 Formulär
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht005491
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
MANUSCRIPT_PATIENT_ID
Item
De-identified Patient ID used in the manuscript
string
C4684638 (UMLS CUI [1,1])
C1269815 (UMLS CUI [1,2])
C4704799 (UMLS CUI [1,3])
SAMPLE_TYPE
Item
Sample Type
string
C2347029 (UMLS CUI [1,1])
COVERAGE
Item
Sequencing WGS coverage
float
C3640077 (UMLS CUI [1,1])
C3846158 (UMLS CUI [1,2])
EST_PURITY
Item
Estimated tumor purity using method outlined in publication
string
C0750572 (UMLS CUI [1,1])
C0027651 (UMLS CUI [1,2])
C1882508 (UMLS CUI [1,3])
C2911685 (UMLS CUI [1,4])
C1704324 (UMLS CUI [1,5])
SAMPLE_FIGURE_ID
Item
Shorthand sample ID used in publication text and figures
string
C0037001 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
C1704324 (UMLS CUI [1,3])
C1527021 (UMLS CUI [1,4])
C3846158 (UMLS CUI [1,5])
TUMOR_LENGTH_CM
Item
Tumor length
string
C0027651 (UMLS CUI [1,1])
C1444754 (UMLS CUI [1,2])
TUMOR_WIDTH_CM
Item
Tumor width
string
C0027651 (UMLS CUI [1,1])
C0487742 (UMLS CUI [1,2])
TUMOR_DEPTH_CM
Item
Tumor depth
string
C0027651 (UMLS CUI [1,1])
C0205125 (UMLS CUI [1,2])
FUHRMAN_GRADE
Item
Fuhrman grade of tumor
string
C1300581 (UMLS CUI [1,1])
PRIMARY_TUMOR_LOCATION
Item
Location of tumor in body
string
C0872338 (UMLS CUI [1,1])
SEQUENCING_CENTER
Item
Name of the center which conducted sequencing
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
ANALYTE_TYPE
Item
Analyte type
string
C4744818 (UMLS CUI [1,1])
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