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This sample attributes table includes body site where sample was collected, analyte type, histological type, tumor status, genotyping center, genotype platform, sample inclusion or exclusion in GWAS association analyses, and genome strand and build for SNP calling.

5 Formulieren  
pht009258
Beschrijving

pht009258

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Beschrijving

SAMPLE_ID

Datatype

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Beschrijving

BODY_SITE

Datatype

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Beschrijving

ANALYTE_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Beschrijving

IS_TUMOR

Datatype

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Beschrijving

HISTOLOGICAL_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Name of the center which conducted genotyping
Beschrijving

GENOTYPING_CENTER

Datatype

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C1285573
Platform vendor and name
Beschrijving

GENOTYPE_PLATFORM

Datatype

string

Alias
UMLS CUI [1,1]
C1710360
UMLS CUI [1,2]
C2924091
Whether the sample was included in the GWAS association analyses
Beschrijving

SAMPLE_IN_ASSOCIATION_ANALYSES

Datatype

text

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C2350277
UMLS CUI [1,4]
C0936012
If sample was not included in the GWAS association analyses, give reason. Otherwise, "NA"
Beschrijving

REASON_FOR_EXCLUSION

Datatype

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C1298908
UMLS CUI [1,3]
C1512693
UMLS CUI [1,4]
C2350277
UMLS CUI [1,5]
C0936012
UMLS CUI [1,6]
C0566251
Genome build and strand used in SNP calling for the platforms used in the GWAS association analyses. Otherwise, "NA"
Beschrijving

SNP_CALLS

Datatype

string

Alias
UMLS CUI [1,1]
C0017428
UMLS CUI [1,2]
C0752046
UMLS CUI [1,3]
C3846158
UMLS CUI [1,4]
C1524063
UMLS CUI [1,5]
C2964215
UMLS CUI [1,6]
C2350277
UMLS CUI [1,7]
C0936012
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Similar models

This sample attributes table includes body site where sample was collected, analyte type, histological type, tumor status, genotyping center, genotype platform, sample inclusion or exclusion in GWAS association analyses, and genome strand and build for SNP calling.

5 Formulieren
Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht009258
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (no)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (yes)
C0027651 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
GENOTYPING_CENTER
Item
Name of the center which conducted genotyping
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1285573 (UMLS CUI [1,3])
GENOTYPE_PLATFORM
Item
Platform vendor and name
string
C1710360 (UMLS CUI [1,1])
C2924091 (UMLS CUI [1,2])
Item
Whether the sample was included in the GWAS association analyses
text
C1512693 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C2350277 (UMLS CUI [1,3])
C0936012 (UMLS CUI [1,4])
SAMPLE_IN_ASSOCIATION_ANALYSES
Code List
Whether the sample was included in the GWAS association analyses
CL Item
excluded (no)
CL Item
included (yes)
REASON_FOR_EXCLUSION
Item
If sample was not included in the GWAS association analyses, give reason. Otherwise, "NA"
string
C2347026 (UMLS CUI [1,1])
C1298908 (UMLS CUI [1,2])
C1512693 (UMLS CUI [1,3])
C2350277 (UMLS CUI [1,4])
C0936012 (UMLS CUI [1,5])
C0566251 (UMLS CUI [1,6])
SNP_CALLS
Item
Genome build and strand used in SNP calling for the platforms used in the GWAS association analyses. Otherwise, "NA"
string
C0017428 (UMLS CUI [1,1])
C0752046 (UMLS CUI [1,2])
C3846158 (UMLS CUI [1,3])
C1524063 (UMLS CUI [1,4])
C2964215 (UMLS CUI [1,5])
C2350277 (UMLS CUI [1,6])
C0936012 (UMLS CUI [1,7])
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