English

Sample ID, analyte type, body site where sample was obtained, indicator for worse duplicates for sample, and indicator for failed QC criterion of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.

10 forms  
  1. StudyEvent: SEV1
    1. Subject ID, consent group, and affection status of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    2. Subject ID, sample ID, sample use variable, and study of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    3. Subject ID, age at diagnosis, tumor description including tumor behavior, tumor grade, tumor histology, tumor status of sample, and primary site of tumor of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    4. Sample ID, analyte type, and body site where sample was obtained of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    5. Subject ID, gender, ancestry, age at diagnosis, tumor description including tumor behavior, tumor grade, tumor histology, and primary site of tumor of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    6. Sample ID, analyte type, body site where sample was obtained, tumor status of sample, and indicator if DNA was whole genome amplified of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    7. Subject ID, subject ancestry, age at diagnosis, tumor description including tumor behavior, tumor grade, tumor histology, tumor status of sample, primary site of tumor, and indicator if analyzed in European GWAS by FOCI of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    8. Sample ID, analyte type, body site where sample was obtained, indicator for worse duplicates for sample, and indicator for failed QC criterion of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    9. Subject ID, tumor behavior, tumor grade, tumor histology, primary cancer site or control status, and age at diagnosis (cases) or interview (controls) of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    10. Sample ID, analyte type, body site where sample was obtained, and tumor status of sample of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
pht007502
Description

pht007502

Alias
UMLS CUI [1,1]
C3846158
De-identified sample ID
Description

SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C0449705
Analyte type
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
Indicator for worse duplicates for sample, to be removed from primary analysis
Description

EXCL_WORSEDUP

Data type

text

Alias
UMLS CUI [1,1]
C1522602
UMLS CUI [1,2]
C1457868
UMLS CUI [1,3]
C0205173
UMLS CUI [1,4]
C0370003
UMLS CUI [1,5]
C0849355
UMLS CUI [1,6]
C0205225
UMLS CUI [1,7]
C0936012
Indicator for failed QC criterion: call rate less than 95%, extreme heterozygosity
Description

EXCLUDE_QC

Data type

text

Alias
UMLS CUI [1,1]
C1522602
UMLS CUI [1,2]
C0231175
UMLS CUI [1,3]
C0034378
UMLS CUI [2,1]
C3846158
UMLS CUI [2,2]
C0205403
UMLS CUI [2,3]
C0019425
Tumor status of sample
Description

IS_TUMOR

Data type

text

Alias
UMLS CUI [1,1]
C0475752
Indicator for failed sex check from plink --sex-check option (i.e. >80% male calls)
Description

FAIL_SEXCHECK

Data type

text

Alias
UMLS CUI [1,1]
C1522602
UMLS CUI [1,2]
C0231175
UMLS CUI [1,3]
C0079399
UMLS CUI [1,4]
C4321547
Back to the top of the page

Similar models

Sample ID, analyte type, body site where sample was obtained, indicator for worse duplicates for sample, and indicator for failed QC criterion of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.

10 forms
  1. StudyEvent: SEV1
    1. Subject ID, consent group, and affection status of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    2. Subject ID, sample ID, sample use variable, and study of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    3. Subject ID, age at diagnosis, tumor description including tumor behavior, tumor grade, tumor histology, tumor status of sample, and primary site of tumor of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    4. Sample ID, analyte type, and body site where sample was obtained of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    5. Subject ID, gender, ancestry, age at diagnosis, tumor description including tumor behavior, tumor grade, tumor histology, and primary site of tumor of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    6. Sample ID, analyte type, body site where sample was obtained, tumor status of sample, and indicator if DNA was whole genome amplified of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    7. Subject ID, subject ancestry, age at diagnosis, tumor description including tumor behavior, tumor grade, tumor histology, tumor status of sample, primary site of tumor, and indicator if analyzed in European GWAS by FOCI of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    8. Sample ID, analyte type, body site where sample was obtained, indicator for worse duplicates for sample, and indicator for failed QC criterion of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    9. Subject ID, tumor behavior, tumor grade, tumor histology, primary cancer site or control status, and age at diagnosis (cases) or interview (controls) of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
    10. Sample ID, analyte type, body site where sample was obtained, and tumor status of sample of participants with or without ovarian cancer and involved in the "Follow-up of Ovarian Cancer Genetic Association and Interaction Studies (FOCI)" project.
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht007502
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte type
string
C4744818 (UMLS CUI [1,1])
EXCL_WORSEDUP
Item
Indicator for worse duplicates for sample, to be removed from primary analysis
text
C1522602 (UMLS CUI [1,1])
C1457868 (UMLS CUI [1,2])
C0205173 (UMLS CUI [1,3])
C0370003 (UMLS CUI [1,4])
C0849355 (UMLS CUI [1,5])
C0205225 (UMLS CUI [1,6])
C0936012 (UMLS CUI [1,7])
EXCLUDE_QC
Item
Indicator for failed QC criterion: call rate less than 95%, extreme heterozygosity
text
C1522602 (UMLS CUI [1,1])
C0231175 (UMLS CUI [1,2])
C0034378 (UMLS CUI [1,3])
C3846158 (UMLS CUI [2,1])
C0205403 (UMLS CUI [2,2])
C0019425 (UMLS CUI [2,3])
Item
Tumor status of sample
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status of sample
CL Item
Not a tumor (N)
FAIL_SEXCHECK
Item
Indicator for failed sex check from plink --sex-check option (i.e. >80% male calls)
text
C1522602 (UMLS CUI [1,1])
C0231175 (UMLS CUI [1,2])
C0079399 (UMLS CUI [1,3])
C4321547 (UMLS CUI [1,4])
Back to the top of the page