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This sample attributes table includes body site where sample was collected, analyte type, histological type, tumor status, plate, barcode, and treatment IDs, sequencing step, and number of cells used in assays.

5 forms  
pht005798
Description

pht005798

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Description

SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
Cell or tissue type or subtype of sample
Description

HISTOLOGICAL_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Tumor status
Description

IS_TUMOR

Data type

text

Alias
UMLS CUI [1,1]
C0475752
Treatment plate ID
Description

PLATE_ID

Data type

string

Alias
UMLS CUI [1,1]
C0087111
UMLS CUI [1,2]
C0600091
Sequencing library barcode ID
Description

BARCODE_ID

Data type

string

Alias
UMLS CUI [1,1]
C1561491
UMLS CUI [1,2]
C0023621
UMLS CUI [1,3]
C0004738
UMLS CUI [1,4]
C0600091
Treatment ID
Description

TREATMENT_ID

Data type

text

Alias
UMLS CUI [1,1]
C0087111
UMLS CUI [1,2]
C0600091
Sequencing step
Description

SEQUENCING_STEP

Data type

text

Alias
UMLS CUI [1,1]
C1561491
UMLS CUI [1,2]
C1261552
Number of cells used in assay
Description

NUMBER_CELLS

Data type

text

Alias
UMLS CUI [1,1]
C0007584
UMLS CUI [1,2]
C1510438
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Similar models

This sample attributes table includes body site where sample was collected, analyte type, histological type, tumor status, plate, barcode, and treatment IDs, sequencing step, and number of cells used in assays.

5 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht005798
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (Y)
C0027651 (UMLS CUI [1,1])
PLATE_ID
Item
Treatment plate ID
string
C0087111 (UMLS CUI [1,1])
C0600091 (UMLS CUI [1,2])
BARCODE_ID
Item
Sequencing library barcode ID
string
C1561491 (UMLS CUI [1,1])
C0023621 (UMLS CUI [1,2])
C0004738 (UMLS CUI [1,3])
C0600091 (UMLS CUI [1,4])
Item
Treatment ID
text
C0087111 (UMLS CUI [1,1])
C0600091 (UMLS CUI [1,2])
TREATMENT_ID
Code List
Treatment ID
CL Item
Media (CO1)
CL Item
Ethanol (CO2)
CL Item
DMSO (CO3)
CL Item
Progesterone (C1) (T10C1)
CL Item
Progesterone (C2) (T10C2)
CL Item
Estrogen (T11C1)
CL Item
Dexamethasone (T12C1)
CL Item
Caffeine (T13C1)
CL Item
Nicotine (T14C1)
CL Item
Copper (T15C1)
CL Item
Iron (C1) (T16C1)
CL Item
Iron (C2) (T16C2)
CL Item
Manganese (C1) (T17C1)
CL Item
Manganese (C2) (T17C2)
CL Item
Molybdenum (T18C1)
CL Item
Selenium (T19C1)
CL Item
Vitamin C (T1C1)
CL Item
Zinc (T20C1)
CL Item
Tunicamycin (T21C1)
CL Item
PM 2.5 (T22C1)
CL Item
Vitamin D (T23C1)
CL Item
Acrylamide (T24C1)
CL Item
BP-3 (T25C1)
CL Item
BPA (T26C1)
CL Item
Cadmium (T27C1)
CL Item
CCl3 (T28C1)
CL Item
PFOA (T29C1)
CL Item
Vitamin H (T2C1)
CL Item
Triclosan (T30C1)
CL Item
Vitamin B9 (T32C1)
CL Item
Insulin (T33C1)
CL Item
Glucagon (T34C1)
CL Item
Oxytocin (T35C1)
CL Item
Vasopressin (T36C1)
CL Item
Acetylcholine (T37C1)
CL Item
Glucose (T38C1)
CL Item
MSG (T39C1)
CL Item
Vitamin B3 (T3C1)
CL Item
BHA (T40C1)
CL Item
Ibuprofen (T41C1)
CL Item
Acetaminophen (T42C1)
CL Item
Aspirin (T43C1)
CL Item
Loratadine (T44C1)
CL Item
Cetirizine (T45C1)
CL Item
Dextromethorphan (T46C1)
CL Item
Phthalate (T47C1)
C3846158 (UMLS CUI [1,1])
CL Item
Cholesterol (T48C1)
CL Item
Vitamin B5 (T4C1)
CL Item
Vitamin B6 (T5C1)
CL Item
Vitamin A (T6C1)
CL Item
Vitamin E (T7C1)
CL Item
Vitamin K3 (T8C1)
CL Item
Aldosterone (T9C1)
SEQUENCING_STEP
Item
Sequencing step
text
C1561491 (UMLS CUI [1,1])
C1261552 (UMLS CUI [1,2])
NUMBER_CELLS
Item
Number of cells used in assay
text
C0007584 (UMLS CUI [1,1])
C1510438 (UMLS CUI [1,2])
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