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This subject phenotype table contains subject ID, and any detected bacteria or virus pathogens including H.influenzae, M.catarrhalis, S.pneumoniae, coronavirus, and rhinovirus.

9 moduli  
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. The subject consent file includes subject ID and consent information.
    3. This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    4. This subject phenotype table contains subject ID, 12 genes (B2M, CD83, CES1, DNAI2, DNAH5, FOXRED1, GPI, KRT8, OAS1, PPIA, SOCS6, TYROBP) being expressed, and scores tied to gene expression.
    5. This subject phenotype table contains subject ID, delivery method, gestational age, birth weight, breastfeeding, family size, smoke exposure, enrollment season, sex, race, ethnicity, age at enrollment, and derived score for breastfeeding.
    6. This subject phenotype table contains subject ID, and any detected bacteria or virus pathogens including H.influenzae, M.catarrhalis, S.pneumoniae, coronavirus, and rhinovirus.
    7. This sample attribute table contains sample ID, and bacteria taxon including Moraxellaceae, Streptococcaceae, and Pasteurellaceae.
    8. This sample attribute table contains sample ID, body site, analyte type, tumor status, histological type, publication, attribute, sequence number, sample days, presence of bacteria and virus (adenovirus, bocavirus, coronavirus, C. pneumoniae, enterobacteriaceae, Flu A or B, H. influenzae, metapneumovirus, catarrhalis, M. hominis, M. pneumoniae, parechovirus, PIV, rhinovirus, respiratory syncytial virus, S. pneumoniae, and ureaplasma), antibody titer scores of serum (Fa, Ga, Gb, RSV A, RSV B, nasal swab, and nasal wash), and read count.
    9. This subject phenotype table contains subject ID, age at time of visit, presence of symptoms (wheezing, rales, retraction, cyanosis, apnea, lethargy, and poor air movement), maximum respiratory rate, worst saturated oxygen score, length of stay, strain of RSV (Respiratory Syncytial Virus), derived RSV severity score, RSV severity label, and antibiotic use.
pht007558
Descrizione

pht007558

Alias
UMLS CUI [1,1]
C3846158
De-identified Subject ID
Descrizione

SUBJECT_ID

Tipo di dati

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C2348585
H. influenzae, M. catarrhalis or S. pneumoniae detected
Descrizione

ANY_BACTERIA

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0018483
UMLS CUI [1,2]
C0038410
UMLS CUI [1,3]
C0006132
UMLS CUI [1,4]
C0442726
Any bacteria or virus detected
Descrizione

ANY_PATHOGEN

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0004611
UMLS CUI [1,2]
C0042776
UMLS CUI [1,3]
C0442726
Coronavirus or Rhinovirus detected
Descrizione

ANY_VIRUS

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0206422
UMLS CUI [1,2]
C0035473
UMLS CUI [1,3]
C0442726
Coronavirus detected
Descrizione

Coronavirus

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0206422
UMLS CUI [1,2]
C0442726
H. influenzae detected
Descrizione

H_influenzae

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0018483
UMLS CUI [1,2]
C0442726
M. catarrhalis detected
Descrizione

M_catarrhalis

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0006132
UMLS CUI [1,2]
C0442726
Rhinovirus detected
Descrizione

Rhinovirus

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0035473
UMLS CUI [1,2]
C0442726
S. pneumoniae dectected
Descrizione

S_pneumoniae

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0038410
UMLS CUI [1,2]
C0442726
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Similar models

This subject phenotype table contains subject ID, and any detected bacteria or virus pathogens including H.influenzae, M.catarrhalis, S.pneumoniae, coronavirus, and rhinovirus.

9 moduli
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. The subject consent file includes subject ID and consent information.
    3. This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    4. This subject phenotype table contains subject ID, 12 genes (B2M, CD83, CES1, DNAI2, DNAH5, FOXRED1, GPI, KRT8, OAS1, PPIA, SOCS6, TYROBP) being expressed, and scores tied to gene expression.
    5. This subject phenotype table contains subject ID, delivery method, gestational age, birth weight, breastfeeding, family size, smoke exposure, enrollment season, sex, race, ethnicity, age at enrollment, and derived score for breastfeeding.
    6. This subject phenotype table contains subject ID, and any detected bacteria or virus pathogens including H.influenzae, M.catarrhalis, S.pneumoniae, coronavirus, and rhinovirus.
    7. This sample attribute table contains sample ID, and bacteria taxon including Moraxellaceae, Streptococcaceae, and Pasteurellaceae.
    8. This sample attribute table contains sample ID, body site, analyte type, tumor status, histological type, publication, attribute, sequence number, sample days, presence of bacteria and virus (adenovirus, bocavirus, coronavirus, C. pneumoniae, enterobacteriaceae, Flu A or B, H. influenzae, metapneumovirus, catarrhalis, M. hominis, M. pneumoniae, parechovirus, PIV, rhinovirus, respiratory syncytial virus, S. pneumoniae, and ureaplasma), antibody titer scores of serum (Fa, Ga, Gb, RSV A, RSV B, nasal swab, and nasal wash), and read count.
    9. This subject phenotype table contains subject ID, age at time of visit, presence of symptoms (wheezing, rales, retraction, cyanosis, apnea, lethargy, and poor air movement), maximum respiratory rate, worst saturated oxygen score, length of stay, strain of RSV (Respiratory Syncytial Virus), derived RSV severity score, RSV severity label, and antibiotic use.
Name
genere
Description | Question | Decode (Coded Value)
Tipo di dati
Alias
Item Group
pht007558
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
De-identified Subject ID
string
C4684638 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
Item
H. influenzae, M. catarrhalis or S. pneumoniae detected
text
C0018483 (UMLS CUI [1,1])
C0038410 (UMLS CUI [1,2])
C0006132 (UMLS CUI [1,3])
C0442726 (UMLS CUI [1,4])
ANY_BACTERIA
Code List
H. influenzae, M. catarrhalis or S. pneumoniae detected
CL Item
TRUE (1)
CL Item
NA (99)
CL Item
FALSE (0)
Item
Any bacteria or virus detected
text
C0004611 (UMLS CUI [1,1])
C0042776 (UMLS CUI [1,2])
C0442726 (UMLS CUI [1,3])
ANY_PATHOGEN
Code List
Any bacteria or virus detected
CL Item
TRUE (1)
CL Item
NA (99)
CL Item
FALSE (0)
Item
Coronavirus or Rhinovirus detected
text
C0206422 (UMLS CUI [1,1])
C0035473 (UMLS CUI [1,2])
C0442726 (UMLS CUI [1,3])
ANY_VIRUS
Code List
Coronavirus or Rhinovirus detected
CL Item
TRUE (1)
CL Item
NA (99)
CL Item
FALSE (0)
Item
Coronavirus detected
text
C0206422 (UMLS CUI [1,1])
C0442726 (UMLS CUI [1,2])
Coronavirus
Code List
Coronavirus detected
CL Item
TRUE (1)
CL Item
NA (99)
CL Item
FALSE (0)
Item
H. influenzae detected
text
C0018483 (UMLS CUI [1,1])
C0442726 (UMLS CUI [1,2])
H_influenzae
Code List
H. influenzae detected
CL Item
TRUE (1)
CL Item
NA (99)
CL Item
FALSE (0)
Item
M. catarrhalis detected
text
C0006132 (UMLS CUI [1,1])
C0442726 (UMLS CUI [1,2])
M_catarrhalis
Code List
M. catarrhalis detected
CL Item
TRUE (1)
CL Item
NA (99)
CL Item
FALSE (0)
Item
Rhinovirus detected
text
C0035473 (UMLS CUI [1,1])
C0442726 (UMLS CUI [1,2])
Rhinovirus
Code List
Rhinovirus detected
CL Item
TRUE (1)
CL Item
NA (99)
CL Item
FALSE (0)
Item
S. pneumoniae dectected
text
C0038410 (UMLS CUI [1,1])
C0442726 (UMLS CUI [1,2])
S_pneumoniae
Code List
S. pneumoniae dectected
CL Item
TRUE (1)
CL Item
NA (99)
CL Item
FALSE (0)
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