Inglés

This sample attributes table includes body site where sample was collected, analyte type, tumor status, sequencing center, funding source, TOPMed phase, project, and study name.

6 formularios  
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. The subject consent data table contains subject IDs, consent group information, and subject aliases.
    3. This pedigree data table contains family relationships in the format of family IDs, subject IDs, father IDs, mother IDs, sex of subjects, and twin IDs for monozygotic twins.
    4. This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    5. This sample attributes table includes body site where sample was collected, analyte type, tumor status, sequencing center, funding source, TOPMed phase, project, and study name.
    6. This subject phenotypes data table includes study visit, anthropometric measurements (n=4 variables; height, BMI, waist, and hip), blood pressure (n=6 variables; systolic, diastolic, and ankle-brachial), medications (n=4 variables; blood pressure, hypertension, diabetes, and lipid), blood measurements (n=99 variables; cholesterol, blood factors, rbc, wbc, whole blood, platelet rich plasma, aggregation for epinephrine or ADP, inflammatory markers), urinary creatinine, menstruation and menopause status (n=3 variables), CT measurements (n=2 variables), food intake, carbon monoxide exposure, and smoking status (n=7 variables).
pht005960
Descripción

pht005960

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Descripción

SAMPLE_ID

Tipo de datos

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Descripción

BODY_SITE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Descripción

ANALYTE_TYPE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Descripción

IS_TUMOR

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0475752
Name of the center which conducted sequencing
Descripción

SEQUENCING_CENTER

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C1561491
Project funding source
Descripción

Funding_Source

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1709701
UMLS CUI [1,2]
C0243098
UMLS CUI [1,3]
C0449416
TOPMed Phase
Descripción

TOPMed_Phase

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0205390
UMLS CUI [1,2]
C2603343
TOPMed Project that funded sequencing
Descripción

TOPMed_Project

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0700032
UMLS CUI [1,2]
C0243098
UMLS CUI [1,3]
C1561491
TOPMed-assigned short study name (1:1 with TOPMed phs number)
Descripción

Study_Name

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1806781
UMLS CUI [1,2]
C2348560
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Similar models

This sample attributes table includes body site where sample was collected, analyte type, tumor status, sequencing center, funding source, TOPMed phase, project, and study name.

6 formularios
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. The subject consent data table contains subject IDs, consent group information, and subject aliases.
    3. This pedigree data table contains family relationships in the format of family IDs, subject IDs, father IDs, mother IDs, sex of subjects, and twin IDs for monozygotic twins.
    4. This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    5. This sample attributes table includes body site where sample was collected, analyte type, tumor status, sequencing center, funding source, TOPMed phase, project, and study name.
    6. This subject phenotypes data table includes study visit, anthropometric measurements (n=4 variables; height, BMI, waist, and hip), blood pressure (n=6 variables; systolic, diastolic, and ankle-brachial), medications (n=4 variables; blood pressure, hypertension, diabetes, and lipid), blood measurements (n=99 variables; cholesterol, blood factors, rbc, wbc, whole blood, platelet rich plasma, aggregation for epinephrine or ADP, inflammatory markers), urinary creatinine, menstruation and menopause status (n=3 variables), CT measurements (n=2 variables), food intake, carbon monoxide exposure, and smoking status (n=7 variables).
Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de datos
Alias
Item Group
pht005960
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
BODY_SITE
Code List
Body site where sample was collected
CL Item
peripheral blood (peripheral blood)
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
ANALYTE_TYPE
Code List
Analyte Type
CL Item
DNA (DNA)
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
unknown (unknown)
Item
Name of the center which conducted sequencing
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
SEQUENCING_CENTER
Code List
Name of the center which conducted sequencing
CL Item
BROAD (BROAD)
CL Item
ILLUMINA (ILLUMINA)
CL Item
MACROGEN (MACROGEN)
Funding_Source
Item
Project funding source
string
C1709701 (UMLS CUI [1,1])
C0243098 (UMLS CUI [1,2])
C0449416 (UMLS CUI [1,3])
TOPMed_Phase
Item
TOPMed Phase
text
C0205390 (UMLS CUI [1,1])
C2603343 (UMLS CUI [1,2])
TOPMed_Project
Item
TOPMed Project that funded sequencing
string
C0700032 (UMLS CUI [1,1])
C0243098 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
Study_Name
Item
TOPMed-assigned short study name (1:1 with TOPMed phs number)
string
C1806781 (UMLS CUI [1,1])
C2348560 (UMLS CUI [1,2])
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