English

This subject phenotype table contains subject ID, BCAC acronym for study, country that the sample is located, case control status of the subject for breast cancer, gender of participant, gender detected by genotype data, age at interview, age at diagnosis, estrogen receptor (ER) status of index tumor, and source of data on ER status of index tumor.

5 forms  
pht006340
Description

pht006340

Alias
UMLS CUI [1,1]
C3846158
BCAC unique subject identifier
Description

subject_ID

Data type

string

Alias
UMLS CUI [1,1]
C1511299
UMLS CUI [1,2]
C2348584
BCAC acronym for study
Description

study

Data type

string

Alias
UMLS CUI [1,1]
C1511299
UMLS CUI [1,2]
C2986333
Country that the sample is located
Description

study_country

Data type

string

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C0454664
Case-control status
Description

status

Data type

text

Alias
UMLS CUI [1,1]
C3274646
Gender of participant
Description

sex

Data type

text

Alias
UMLS CUI [1,1]
C0079399
Age at interview/questionnaire for controls and cases
Description

age_int

Data type

text

Measurement units
  • years
Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [1,2]
C0038951
UMLS CUI [1,3]
C1706256
UMLS CUI [1,4]
C0009932
years
Age at diagnosis of indexed breast cancer for cases
Description

age_diag_index

Data type

text

Measurement units
  • years
Alias
UMLS CUI [1,1]
C1828181
UMLS CUI [1,2]
C0678222
UMLS CUI [1,3]
C1706256
years
Estrogen receptor status of index tumour
Description

ER_statusIndex

Data type

text

Alias
UMLS CUI [1,1]
C2919271
Source of data on ER status of index tumour
Description

ER_statusIndex_source

Data type

text

Alias
UMLS CUI [1,1]
C2919271
UMLS CUI [1,2]
C0011001
Gender of participant detected by genotype data
Description

sex_by_geno

Data type

text

Alias
UMLS CUI [1,1]
C0079399
UMLS CUI [1,2]
C0017431
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Similar models

This subject phenotype table contains subject ID, BCAC acronym for study, country that the sample is located, case control status of the subject for breast cancer, gender of participant, gender detected by genotype data, age at interview, age at diagnosis, estrogen receptor (ER) status of index tumor, and source of data on ER status of index tumor.

5 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht006340
C3846158 (UMLS CUI [1,1])
subject_ID
Item
BCAC unique subject identifier
string
C1511299 (UMLS CUI [1,1])
C2348584 (UMLS CUI [1,2])
study
Item
BCAC acronym for study
string
C1511299 (UMLS CUI [1,1])
C2986333 (UMLS CUI [1,2])
study_country
Item
Country that the sample is located
string
C0370003 (UMLS CUI [1,1])
C0454664 (UMLS CUI [1,2])
Item
Case-control status
text
C3274646 (UMLS CUI [1,1])
status
Code List
Case-control status
CL Item
control (0)
C3274648 (UMLS CUI [1,1])
CL Item
invasive case (1)
CL Item
in-situ case (2)
CL Item
case unknown invasiveness (3)
Item
Gender of participant
text
C0079399 (UMLS CUI [1,1])
sex
Code List
Gender of participant
CL Item
female (F)
C0086287 (UMLS CUI [1,1])
CL Item
unknown (U)
age_int
Item
Age at interview/questionnaire for controls and cases
text
C0001779 (UMLS CUI [1,1])
C0038951 (UMLS CUI [1,2])
C1706256 (UMLS CUI [1,3])
C0009932 (UMLS CUI [1,4])
age_diag_index
Item
Age at diagnosis of indexed breast cancer for cases
text
C1828181 (UMLS CUI [1,1])
C0678222 (UMLS CUI [1,2])
C1706256 (UMLS CUI [1,3])
Item
Estrogen receptor status of index tumour
text
C2919271 (UMLS CUI [1,1])
ER_statusIndex
Code List
Estrogen receptor status of index tumour
CL Item
negative (0)
CL Item
positive (1)
CL Item
not applicable (777)
C1272460 (UMLS CUI [1,1])
CL Item
unknown (888)
Item
Source of data on ER status of index tumour
text
C2919271 (UMLS CUI [1,1])
C0011001 (UMLS CUI [1,2])
ER_statusIndex_source
Code List
Source of data on ER status of index tumour
CL Item
clinical records (0)
CL Item
IHC stain of whole sections (1)
CL Item
IHC stain of TMAs (2)
CL Item
other (3)
CL Item
Derived from Ariol data of TMAs (4)
CL Item
not applicable (777)
C1272460 (UMLS CUI [1,1])
CL Item
unknown (888)
Item
Gender of participant detected by genotype data
text
C0079399 (UMLS CUI [1,1])
C0017431 (UMLS CUI [1,2])
sex_by_geno
Code List
Gender of participant detected by genotype data
CL Item
female (F)
C0086287 (UMLS CUI [1,1])
CL Item
male (M)
C0086582 (UMLS CUI [1,1])
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