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The sample GEO mapping data table includes a mapping of sample IDs to NCBI GEO accession ID. It also contains sample title, platform assay type, GEO platform assay type accession, and sample tissue type.

12 Formulär  
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. The sample GEO mapping data table includes a mapping of sample IDs to NCBI GEO accession ID. It also contains sample title, platform assay type, GEO platform assay type accession, and sample tissue type.
    3. This sample attributes data table contains body site and analyte type.
    4. This subject consent data table contains subject IDs, consent group information, and biological sex.
    5. This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    6. This subject phenotypes data table contains case control status with respect to clinical diagnosis of a neurological disorder or disease at the time of death, self-reported race, and subject age at enrollment.
    7. This sample attributes data table contains body site, analyte type, and and tumor status.
    8. This sample attributes data table contains body site, analyte type, and and tumor status.
    9. This sample attributes data table contains body site, analyte type, and and tumor status.
    10. This sample attributes data table contains body site, analyte type, and and tumor status.
    11. This sample attributes data table contains body site, analyte type, and and tumor status.
    12. This sample attributes data table contains body site, analyte type, and and tumor status.
pht001878
Beskrivning

pht001878

Alias
UMLS CUI [1,1]
C3846158
Sample D
Beskrivning

SAMPLE_ID

Datatyp

text

Alias
UMLS CUI [1,1]
C2347026
Sample Title at GEO
Beskrivning

GEO_SAMPLE_TITLE

Datatyp

string

Alias
UMLS CUI [1,1]
C1299222
UMLS CUI [1,2]
C3888414
Accession Number for sample at GEO repository
Beskrivning

GEO_ SAMPLE_ACCESSION

Datatyp

string

Alias
UMLS CUI [1,1]
C1510755
UMLS CUI [1,2]
C2347026
UMLS CUI [1,3]
C3847505
Platform assay type
Beskrivning

GEO_PLATFORM_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C2964215
UMLS CUI [1,2]
C0332307
Accession Number for platform assay type at GEO repository
Beskrivning

GEO_PLATFORM_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C1510755
UMLS CUI [1,2]
C2964215
UMLS CUI [1,3]
C3847505
Sample Tissue Type
Beskrivning

GEO_SAMPLE_SOURCE

Datatyp

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C2713035
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Similar models

The sample GEO mapping data table includes a mapping of sample IDs to NCBI GEO accession ID. It also contains sample title, platform assay type, GEO platform assay type accession, and sample tissue type.

12 Formulär
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. The sample GEO mapping data table includes a mapping of sample IDs to NCBI GEO accession ID. It also contains sample title, platform assay type, GEO platform assay type accession, and sample tissue type.
    3. This sample attributes data table contains body site and analyte type.
    4. This subject consent data table contains subject IDs, consent group information, and biological sex.
    5. This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    6. This subject phenotypes data table contains case control status with respect to clinical diagnosis of a neurological disorder or disease at the time of death, self-reported race, and subject age at enrollment.
    7. This sample attributes data table contains body site, analyte type, and and tumor status.
    8. This sample attributes data table contains body site, analyte type, and and tumor status.
    9. This sample attributes data table contains body site, analyte type, and and tumor status.
    10. This sample attributes data table contains body site, analyte type, and and tumor status.
    11. This sample attributes data table contains body site, analyte type, and and tumor status.
    12. This sample attributes data table contains body site, analyte type, and and tumor status.
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht001878
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
Sample D
text
C2347026 (UMLS CUI [1,1])
GEO_SAMPLE_TITLE
Item
Sample Title at GEO
string
C1299222 (UMLS CUI [1,1])
C3888414 (UMLS CUI [1,2])
GEO_ SAMPLE_ACCESSION
Item
Accession Number for sample at GEO repository
string
C1510755 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C3847505 (UMLS CUI [1,3])
Item
Platform assay type
string
C2964215 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
GEO_PLATFORM_TYPE
Code List
Platform assay type
CL Item
CpG Site Methylation (CpG)
CL Item
messenger RNA Expression (mRNA)
CL Item
micro RNA expression (miRNA)
Item
Accession Number for platform assay type at GEO repository
string
C1510755 (UMLS CUI [1,1])
C2964215 (UMLS CUI [1,2])
C3847505 (UMLS CUI [1,3])
GEO_PLATFORM_ID
Code List
Accession Number for platform assay type at GEO repository
CL Item
Illumina HumanRef-8 v2.0 expression beadchip (GPL6104)
CL Item
Illumina HumanHT-12 V3.0 beadchip (GPL6947)
CL Item
Illumina Human v1 MicroRNA expression beadchip (GPL8178)
CL Item
Illumina HumanMethylation27 BeadChip (GPL8490)
Item
Sample Tissue Type
string
C2347026 (UMLS CUI [1,1])
C2713035 (UMLS CUI [1,2])
GEO_SAMPLE_SOURCE
Code List
Sample Tissue Type
CL Item
Cerebellum (CRBLM)
CL Item
Frontal cortex (FCTX)
CL Item
Caudal pons (PONS)
CL Item
Temporal cortex (TCTX)
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