Inglese

This sample attributes table includes sample histological type, tumor status, analyte type, sample source, other IDs (UCSD source tissue, UCSD iPSC clone, WiCell), sequencing center, clone and passage.

6 moduli  
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. The subject consent data table contains subject IDs and consent information.
    3. This pedigree data table contains family relationships in the format of family IDs, subject IDs, father IDs, mother IDs, subjects's sex, twin IDs, and indicator for monozygotic and dizygotic twins.
    4. This data table contains mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    5. This subject phenotype table includes subject's sex, age at enrollment, race (n=3 variables; self-reported, race/ethnicity grouped by researcher, and genetically similar population groups), heart diagnoses (n=5 variables; primary diagnoses and classification, other diagnoses, comments, and disease ontology), IPSCORE IDs, and indicators if subject was part of a study/paper (n=10 variables; iPSCORE resource, aberrant iPSC methylation in twins, WGS, eQTL, allele-specific NKX2-5 binding in iPSC-CMs, Hi-C in iPSCs and iPSC-CMs, mutational burden of iPSCs, iPSC-derived retinal pigment epithelium, structural variation in IPSCORE, and lncrnas in iPSC-CMs).
    6. This sample attributes table includes sample histological type, tumor status, analyte type, sample source, other IDs (UCSD source tissue, UCSD iPSC clone, WiCell), sequencing center, clone and passage.
pht006353
Descrizione

pht006353

Alias
UMLS CUI [1,1]
C3846158
De-identified unique Sample ID
Descrizione

SAMPLE_ID

Tipo di dati

string

Alias
UMLS CUI [1,1]
C2348585
UMLS CUI [1,2]
C4684638
Cell or tissue type or subtype of sample
Descrizione

HISTOLOGICAL_TYPE

Tipo di dati

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Tumor status
Descrizione

IS_TUMOR

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0475752
Original clone number from which cell line was expanded
Descrizione

CLONE

Tipo di dati

string

Alias
UMLS CUI [1,1]
C0205313
UMLS CUI [1,2]
C1522642
UMLS CUI [1,3]
C0007600
Passage number of cell line which was analysed
Descrizione

PASSAGE

Tipo di dati

string

Alias
UMLS CUI [1,1]
C5236382
UMLS CUI [1,2]
C0007600
UMLS CUI [1,3]
C0936012
UUID Identifier for tissue sample of fibroblast, blood or iPSC
Descrizione

UCSD_SOURCE_TISSUE_ID

Tipo di dati

string

Alias
UMLS CUI [1,1]
C1710569
UMLS CUI [1,2]
C0016030
UMLS CUI [2,1]
C1710569
UMLS CUI [2,2]
C0178913
UMLS CUI [3,1]
C1710569
UMLS CUI [3,2]
C2717959
UUID Identifier for iPSC clone. If the cell is an iPSC-derived cell type, this indicates the source clone.
Descrizione

UCSD_IPSC_CLONE_ID

Tipo di dati

string

Alias
UMLS CUI [1,1]
C1710569
UMLS CUI [1,2]
C2717959
UMLS CUI [1,3]
C1522642
UMLS CUI [2,1]
C2717959
UMLS CUI [2,2]
C0449475
UMLS CUI [2,3]
C0449416
UMLS CUI [2,4]
C1522642
WiCell identifier assigned to iPSC line archived at WiCell Research Institute, Wisconsin, USA
Descrizione

WICELL_ID

Tipo di dati

string

Alias
UMLS CUI [1,1]
C3846158
UMLS CUI [1,2]
C0600091
UMLS CUI [1,3]
C2717959
UMLS CUI [1,4]
C1301943
Analyte Type
Descrizione

ANALYTE_TYPE

Tipo di dati

string

Alias
UMLS CUI [1,1]
C4744818
Organisation providing original sample
Descrizione

SAMPLE_SOURCE

Tipo di dati

string

Alias
UMLS CUI [1,1]
C1549759
UMLS CUI [1,2]
C1138603
UMLS CUI [1,3]
C0205313
UMLS CUI [1,4]
C2347026
Name of the center which conducted sequencing
Descrizione

SEQUENCING_CENTER

Tipo di dati

text

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C1561491
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Similar models

This sample attributes table includes sample histological type, tumor status, analyte type, sample source, other IDs (UCSD source tissue, UCSD iPSC clone, WiCell), sequencing center, clone and passage.

6 moduli
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. The subject consent data table contains subject IDs and consent information.
    3. This pedigree data table contains family relationships in the format of family IDs, subject IDs, father IDs, mother IDs, subjects's sex, twin IDs, and indicator for monozygotic and dizygotic twins.
    4. This data table contains mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs.
    5. This subject phenotype table includes subject's sex, age at enrollment, race (n=3 variables; self-reported, race/ethnicity grouped by researcher, and genetically similar population groups), heart diagnoses (n=5 variables; primary diagnoses and classification, other diagnoses, comments, and disease ontology), IPSCORE IDs, and indicators if subject was part of a study/paper (n=10 variables; iPSCORE resource, aberrant iPSC methylation in twins, WGS, eQTL, allele-specific NKX2-5 binding in iPSC-CMs, Hi-C in iPSCs and iPSC-CMs, mutational burden of iPSCs, iPSC-derived retinal pigment epithelium, structural variation in IPSCORE, and lncrnas in iPSC-CMs).
    6. This sample attributes table includes sample histological type, tumor status, analyte type, sample source, other IDs (UCSD source tissue, UCSD iPSC clone, WiCell), sequencing center, clone and passage.
Name
genere
Description | Question | Decode (Coded Value)
Tipo di dati
Alias
Item Group
pht006353
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified unique Sample ID
string
C2348585 (UMLS CUI [1,1])
C4684638 (UMLS CUI [1,2])
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
HISTOLOGICAL_TYPE
Code List
Cell or tissue type or subtype of sample
CL Item
blood (blood)
CL Item
fibroblast (fibroblast)
CL Item
iPSC (iPSC)
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
No (N)
CLONE
Item
Original clone number from which cell line was expanded
string
C0205313 (UMLS CUI [1,1])
C1522642 (UMLS CUI [1,2])
C0007600 (UMLS CUI [1,3])
PASSAGE
Item
Passage number of cell line which was analysed
string
C5236382 (UMLS CUI [1,1])
C0007600 (UMLS CUI [1,2])
C0936012 (UMLS CUI [1,3])
UCSD_SOURCE_TISSUE_ID
Item
UUID Identifier for tissue sample of fibroblast, blood or iPSC
string
C1710569 (UMLS CUI [1,1])
C0016030 (UMLS CUI [1,2])
C1710569 (UMLS CUI [2,1])
C0178913 (UMLS CUI [2,2])
C1710569 (UMLS CUI [3,1])
C2717959 (UMLS CUI [3,2])
UCSD_IPSC_CLONE_ID
Item
UUID Identifier for iPSC clone. If the cell is an iPSC-derived cell type, this indicates the source clone.
string
C1710569 (UMLS CUI [1,1])
C2717959 (UMLS CUI [1,2])
C1522642 (UMLS CUI [1,3])
C2717959 (UMLS CUI [2,1])
C0449475 (UMLS CUI [2,2])
C0449416 (UMLS CUI [2,3])
C1522642 (UMLS CUI [2,4])
WICELL_ID
Item
WiCell identifier assigned to iPSC line archived at WiCell Research Institute, Wisconsin, USA
string
C3846158 (UMLS CUI [1,1])
C0600091 (UMLS CUI [1,2])
C2717959 (UMLS CUI [1,3])
C1301943 (UMLS CUI [1,4])
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
ANALYTE_TYPE
Code List
Analyte Type
CL Item
DNA (DNA)
Item
Organisation providing original sample
string
C1549759 (UMLS CUI [1,1])
C1138603 (UMLS CUI [1,2])
C0205313 (UMLS CUI [1,3])
C2347026 (UMLS CUI [1,4])
SAMPLE_SOURCE
Code List
Organisation providing original sample
CL Item
UCSD (UCSD)
Item
Name of the center which conducted sequencing
text
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
SEQUENCING_CENTER
Code List
Name of the center which conducted sequencing
CL Item
Human Longevity, Inc. (HLI)
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