Engelsk

This sample attributes table includes body site where sample was collected, analyte type, histological type, tumor status, sequencing center, funding source, TOPMed phase, project, and study name.

4 Formulär  
pht008604
Beskrivning

pht008604

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample Identifier
Beskrivning

SAMPLE_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C5237951
Body site where sample was collected
Beskrivning

BODY_SITE

Datatyp

string

Alias
UMLS CUI [1,1]
C0449705
UMLS CUI [1,2]
C0200345
Analyte Type
Beskrivning

ANALYTE_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C4744818
Name of the center which conducted sequencing
Beskrivning

SEQUENCING_CENTER

Datatyp

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C5575037
UMLS CUI [1,3]
C1561491
Cell or tissue type or subtype of sample
Beskrivning

HISTOLOGICAL_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Tumor status
Beskrivning

IS_TUMOR

Datatyp

text

Alias
UMLS CUI [1,1]
C0475752
Project funding source
Beskrivning

Funding_Source

Datatyp

string

Alias
UMLS CUI [1,1]
C0243098
UMLS CUI [1,2]
C0449416
TOPMed Phase
Beskrivning

TOPMed_Phase

Datatyp

text

Alias
UMLS CUI [1,1]
C0205390
UMLS CUI [1,2]
C3846158
TOPMed Project that funded sequencing
Beskrivning

TOPMed_Project

Datatyp

string

Alias
UMLS CUI [1,1]
C3846158
UMLS CUI [1,2]
C1709701
UMLS CUI [1,3]
C0243098
UMLS CUI [1,4]
C1561491
TOPMed-assigned short study name (1:1 with TOPMed phs number)
Beskrivning

Study_Name

Datatyp

string

Alias
UMLS CUI [1,1]
C3846158
UMLS CUI [1,2]
C2348560
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Similar models

This sample attributes table includes body site where sample was collected, analyte type, histological type, tumor status, sequencing center, funding source, TOPMed phase, project, and study name.

4 Formulär
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht008604
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample Identifier
string
C4684638 (UMLS CUI [1,1])
C5237951 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
C0200345 (UMLS CUI [1,2])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
SEQUENCING_CENTER
Item
Name of the center which conducted sequencing
string
C1301943 (UMLS CUI [1,1])
C5575037 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not tumor (N)
CL Item
Is tumor (Y)
C0027651 (UMLS CUI [1,1])
Funding_Source
Item
Project funding source
string
C0243098 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
TOPMed_Phase
Item
TOPMed Phase
text
C0205390 (UMLS CUI [1,1])
C3846158 (UMLS CUI [1,2])
TOPMed_Project
Item
TOPMed Project that funded sequencing
string
C3846158 (UMLS CUI [1,1])
C1709701 (UMLS CUI [1,2])
C0243098 (UMLS CUI [1,3])
C1561491 (UMLS CUI [1,4])
Study_Name
Item
TOPMed-assigned short study name (1:1 with TOPMed phs number)
string
C3846158 (UMLS CUI [1,1])
C2348560 (UMLS CUI [1,2])
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