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This sample attributes data table includes body site where sample was collected, analyte type, histological type, tumor status, case/control status for Testicular Germ Cell Tumors (TGCT), histology and side of first and second TGCT cases, family history of TGCT (n=4 variables), and medical history of cryptorchidism (n=2 variables).

4 Formulär  
pht010330
Beskrivning

pht010330

Alias
UMLS CUI [1,1]
C3846158
Sample ID
Beskrivning

SAMPLE_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C1299222
Case/control status for TCGT
Beskrivning

Phenotype

Datatyp

text

Alias
UMLS CUI [1,1]
C3274646
Histology of first tumor diagnosis (EGCT or TGCT)
Beskrivning

CASE_FIRST_HISTOLOGY

Datatyp

text

Alias
UMLS CUI [1,1]
C0019638
UMLS CUI [1,2]
C3172269
UMLS CUI [1,3]
C1336708
UMLS CUI [1,4]
C0262963
CASE: Did your first TGCT arise in left or right testis?
Beskrivning

CASE_FIRST_SIDE

Datatyp

text

Alias
UMLS CUI [1,1]
C1706256
UMLS CUI [1,2]
C1336708
UMLS CUI [1,3]
C1515974
CASE: Did you have a subsequent TGCT dx? (1=Yes,0=No)
Beskrivning

CASE_SECOND_TGCT

Datatyp

text

Alias
UMLS CUI [1,1]
C1706256
UMLS CUI [1,2]
C1336708
CASE: Histology of second TGCT
Beskrivning

CASE_SECOND_TGCT_HISTOLOGY

Datatyp

text

Alias
UMLS CUI [1,1]
C1706256
UMLS CUI [1,2]
C1336708
UMLS CUI [1,3]
C0019638
UMLS CUI [1,4]
C0205436
CASE: Did your second TGCT arise in left or right testis?
Beskrivning

CASE_SECOND_TGCT_SIDE

Datatyp

text

Alias
UMLS CUI [1,1]
C1706256
UMLS CUI [1,2]
C1336708
UMLS CUI [1,3]
C1515974
UMLS CUI [1,4]
C0205436
FAMHX: ever had 1st degree relative diagnosed with TGCT
Beskrivning

FAMHX_EVER_1DEG

Datatyp

text

Alias
UMLS CUI [1,1]
C0241889
UMLS CUI [1,2]
C1266851
UMLS CUI [1,3]
C1336708
UMLS CUI [1,4]
C0011900
FAMHX: 1st degree relative with TGCT
Beskrivning

FAMHX_REL_1DEG

Datatyp

text

Alias
UMLS CUI [1,1]
C0241889
UMLS CUI [1,2]
C1336708
UMLS CUI [1,3]
C1266851
FAMHX: ever had 2nd degree relative diagnosed with TGCT
Beskrivning

FAMHX_EVER_2DEG

Datatyp

text

Alias
UMLS CUI [1,1]
C0241889
UMLS CUI [1,2]
C1336708
UMLS CUI [1,3]
C3698428
UMLS CUI [1,4]
C0011900
FAMHX: 2nd degree relative with TGCT
Beskrivning

FAMHX_REL_2DEG

Datatyp

text

Alias
UMLS CUI [1,1]
C0241889
UMLS CUI [1,2]
C1336708
UMLS CUI [1,3]
C3698428
MEDHX: cryptorchidism
Beskrivning

MEDHX_CRYPT

Datatyp

text

Alias
UMLS CUI [1,1]
C0262926
UMLS CUI [1,2]
C0010417
MEDHX: cryptorchidism laterality
Beskrivning

MEDHX_CRYPT_TYPE

Datatyp

text

Alias
UMLS CUI [1,1]
C0262926
UMLS CUI [1,2]
C0010417
UMLS CUI [1,3]
C0925205
The collection site of the sample
Beskrivning

BODY_SITE

Datatyp

text

Alias
UMLS CUI [1,1]
C0449705
The analyte type of the sample
Beskrivning

ANALYTE_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C4744818
UMLS CUI [1,2]
C0370003
Histological type of the sample
Beskrivning

HISTOLOGICAL_TYPE

Datatyp

text

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C0449574
Tumor status of the sample
Beskrivning

IS_TUMOR

Datatyp

text

Alias
UMLS CUI [1,1]
C0475752
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Similar models

This sample attributes data table includes body site where sample was collected, analyte type, histological type, tumor status, case/control status for Testicular Germ Cell Tumors (TGCT), histology and side of first and second TGCT cases, family history of TGCT (n=4 variables), and medical history of cryptorchidism (n=2 variables).

4 Formulär
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht010330
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
Item
Case/control status for TCGT
text
C3274646 (UMLS CUI [1,1])
Phenotype
Code List
Case/control status for TCGT
CL Item
Control (1)
C3274648 (UMLS CUI [1,1])
CL Item
Control (2)
C3274648 (UMLS CUI [1,1])
Item
Histology of first tumor diagnosis (EGCT or TGCT)
text
C0019638 (UMLS CUI [1,1])
C3172269 (UMLS CUI [1,2])
C1336708 (UMLS CUI [1,3])
C0262963 (UMLS CUI [1,4])
CASE_FIRST_HISTOLOGY
Code List
Histology of first tumor diagnosis (EGCT or TGCT)
CL Item
control (0)
C3274648 (UMLS CUI [1,1])
CL Item
seminoma (1)
CL Item
non-seminoma (2)
CL Item
mixed (3)
CL Item
Other (4)
CL Item
spermacytic seminoma (5)
CL Item
Unknown (6)
CL Item
Right:seminoma Left:non-seminoma (7)
CL Item
Right:seminoma Left:mixed (8)
CL Item
Missing (9)
CL Item
R:mixed L:Unknown (10)
CL Item
R:seminoma L:mixed (11)
CL Item
R:non-seminoma L:mixed (12)
CL Item
R:unknwon L:mixed (13)
CL Item
R:seminoma L:non-seminoma (14)
Item
CASE: Did your first TGCT arise in left or right testis?
text
C1706256 (UMLS CUI [1,1])
C1336708 (UMLS CUI [1,2])
C1515974 (UMLS CUI [1,3])
CASE_FIRST_SIDE
Code List
CASE: Did your first TGCT arise in left or right testis?
CL Item
Control (0)
C3274648 (UMLS CUI [1,1])
CL Item
Left (1)
CL Item
Right (2)
CL Item
Both (3)
CL Item
Extragonadal (4)
CL Item
Missing (9)
CL Item
Unknown (.)
Item
CASE: Did you have a subsequent TGCT dx? (1=Yes,0=No)
text
C1706256 (UMLS CUI [1,1])
C1336708 (UMLS CUI [1,2])
CASE_SECOND_TGCT
Code List
CASE: Did you have a subsequent TGCT dx? (1=Yes,0=No)
CL Item
Control (0)
C3274648 (UMLS CUI [1,1])
CL Item
Case (1)
C3274647 (UMLS CUI [1,1])
CL Item
Missing (9)
CL Item
Missing (.)
Item
CASE: Histology of second TGCT
text
C1706256 (UMLS CUI [1,1])
C1336708 (UMLS CUI [1,2])
C0019638 (UMLS CUI [1,3])
C0205436 (UMLS CUI [1,4])
CASE_SECOND_TGCT_HISTOLOGY
Code List
CASE: Histology of second TGCT
CL Item
control (0)
C3274648 (UMLS CUI [1,1])
CL Item
seminoma (1)
CL Item
non-seminoma (2)
CL Item
mixed (3)
CL Item
Other (4)
CL Item
spermacytic seminoma (5)
CL Item
Unknown (6)
CL Item
Right:seminoma Left:non-seminoma (7)
CL Item
Right:seminoma Left:mixed (8)
CL Item
Missing (9)
CL Item
R:mixed L:Unknown (10)
CL Item
R:seminoma L:mixed (11)
CL Item
R:non-seminoma L:mixed (12)
CL Item
R:unknwon L:mixed (13)
CL Item
R:seminoma L:non-seminoma (14)
Item
CASE: Did your second TGCT arise in left or right testis?
text
C1706256 (UMLS CUI [1,1])
C1336708 (UMLS CUI [1,2])
C1515974 (UMLS CUI [1,3])
C0205436 (UMLS CUI [1,4])
CASE_SECOND_TGCT_SIDE
Code List
CASE: Did your second TGCT arise in left or right testis?
CL Item
Control (0)
C3274648 (UMLS CUI [1,1])
CL Item
Left (1)
CL Item
Right (2)
CL Item
Both (3)
CL Item
Extragonadal (4)
CL Item
Unknown (.)
Item
FAMHX: ever had 1st degree relative diagnosed with TGCT
text
C0241889 (UMLS CUI [1,1])
C1266851 (UMLS CUI [1,2])
C1336708 (UMLS CUI [1,3])
C0011900 (UMLS CUI [1,4])
FAMHX_EVER_1DEG
Code List
FAMHX: ever had 1st degree relative diagnosed with TGCT
CL Item
No (0)
CL Item
Yes (1)
CL Item
Unknown (9)
Item
FAMHX: 1st degree relative with TGCT
text
C0241889 (UMLS CUI [1,1])
C1336708 (UMLS CUI [1,2])
C1266851 (UMLS CUI [1,3])
FAMHX_REL_1DEG
Code List
FAMHX: 1st degree relative with TGCT
CL Item
Father (1)
CL Item
Brother (2)
CL Item
Son (3)
CL Item
Father and Brother (4)
CL Item
2 Brothers (5)
CL Item
Unknown (9)
Item
FAMHX: ever had 2nd degree relative diagnosed with TGCT
text
C0241889 (UMLS CUI [1,1])
C1336708 (UMLS CUI [1,2])
C3698428 (UMLS CUI [1,3])
C0011900 (UMLS CUI [1,4])
FAMHX_EVER_2DEG
Code List
FAMHX: ever had 2nd degree relative diagnosed with TGCT
CL Item
No (0)
CL Item
Yes (1)
CL Item
Unknown (9)
Item
FAMHX: 2nd degree relative with TGCT
text
C0241889 (UMLS CUI [1,1])
C1336708 (UMLS CUI [1,2])
C3698428 (UMLS CUI [1,3])
FAMHX_REL_2DEG
Code List
FAMHX: 2nd degree relative with TGCT
CL Item
Grandfather (1)
CL Item
Uncle (2)
CL Item
Nephew (3)
CL Item
Half Brother (4)
CL Item
Grandson (5)
CL Item
Cousin (6)
CL Item
Unknown (9)
Item
MEDHX: cryptorchidism
text
C0262926 (UMLS CUI [1,1])
C0010417 (UMLS CUI [1,2])
MEDHX_CRYPT
Code List
MEDHX: cryptorchidism
CL Item
missing, else 4 digit integer (.)
Item
MEDHX: cryptorchidism laterality
text
C0262926 (UMLS CUI [1,1])
C0010417 (UMLS CUI [1,2])
C0925205 (UMLS CUI [1,3])
MEDHX_CRYPT_TYPE
Code List
MEDHX: cryptorchidism laterality
CL Item
bilateral (1)
CL Item
unilateral, side unknown (2)
CL Item
unilateral on right (3)
CL Item
unilateral on left (4)
CL Item
laterality unknown (5)
CL Item
missing (9)
Item
The collection site of the sample
text
C0449705 (UMLS CUI [1,1])
BODY_SITE
Code List
The collection site of the sample
CL Item
blood (1)
CL Item
saliva (2)
ANALYTE_TYPE
Item
The analyte type of the sample
string
C4744818 (UMLS CUI [1,1])
C0370003 (UMLS CUI [1,2])
Item
Histological type of the sample
text
C0370003 (UMLS CUI [1,1])
C0449574 (UMLS CUI [1,2])
HISTOLOGICAL_TYPE
Code List
Histological type of the sample
CL Item
leukocytes (1)
CL Item
epithelial buccal cells (2)
Item
Tumor status of the sample
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status of the sample
CL Item
yes (1)
CL Item
no (2)
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