This sample attributes table contains sample IDs, body site, analyte type, histological type, tumor status, DNA concentration, coefficient of variation between two pico readings, dish QC metric, cluster call rate, heterozygous SNP genotypes, sample status, and name of the center which conducted genotyping.

5 Formulär

StudyEvent: SEV1

pht006190

Beskrivning

pht006190

De-identified Sample ID

Beskrivning

Sample_ID

Datatyp

string

Alias

UMLS CUI [1,1]: C4684638

UMLS CUI [1,2]: C1299222

Body site where sample was collected

Beskrivning

Body_Site

Datatyp

string

Alias

UMLS CUI [1,1]: C0449705

Analyte Type of the sample

Beskrivning

Analyte_Type

Datatyp

string

Alias

UMLS CUI [1,1]: C4744818

not available (indicating no depositied genotypes for this sample) (NA)

Cell or tissue type or subtype of sample

Beskrivning

Histological_Type

Datatyp

string

Alias

UMLS CUI [1,1]: C2347026

UMLS CUI [1,2]: C0007634

UMLS CUI [1,3]: C0332307

UMLS CUI [2,1]: C1292533

UMLS CUI [2,2]: C0332307

Tumor status

Beskrivning

Is_Tumor

Datatyp

string

Alias

UMLS CUI [1,1]: C0475752

Affymetrix PicoGreen concentration of the DNA sample

Beskrivning

DNA_Concentration

Datatyp

text

Måttenheter

ng per uL

Alias

UMLS CUI [1,1]: C0444245

UMLS CUI [1,2]: C4085938

UMLS CUI [1,3]: C0389638

UMLS CUI [1,4]: C1446561

ng per uL

Coefficient of variation between two pico readings for a sample.

Beskrivning

CVpct

Datatyp

text

Måttenheter

percentage

Alias

UMLS CUI [1,1]: C0389638

UMLS CUI [1,2]: C1975904

percentage

Dish QC metric.

Beskrivning

dQC

Datatyp

text

Alias

UMLS CUI [1,1]: C0034378

UMLS CUI [1,2]: C0699680

The Axiom GT1 cluster call rate of the best array.

Beskrivning

Cluster_CR

Datatyp

text

Alias

UMLS CUI [1,1]: C3846158

(# heterozygous SNP genotypes)/(total # SNPs called)

Beskrivning

Het_Rate

Datatyp

text

Måttenheter

percentage

Alias

UMLS CUI [1,1]: C0752046

UMLS CUI [1,2]: C4288115

percentage

Status of the sample based on Affymetrix QC metrics.

Beskrivning

Sample_Status

Datatyp

string

Alias

UMLS CUI [1,1]: C0370003

UMLs CUI [1, 2]: C0449438

Name of the center which conducted genotyping

Beskrivning

Genotyping_Center

Datatyp

string

Alias

UMLS CUI [1,1]: C1707515

not available (indicating no depositied genotypes for this sample) (NA)

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This sample attributes table contains sample IDs, body site, analyte type, histological type, tumor status, DNA concentration, coefficient of variation between two pico readings, dish QC metric, cluster call rate, heterozygous SNP genotypes, sample status, and name of the center which conducted genotyping.

5 Formulär

StudyEvent: SEV1

Name

Typ

Description | Question | Decode (Coded Value)

Datatyp

Alias

pht006190

Item Group

pht006190

Sample_ID

Item

De-identified Sample ID

string

C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])

Body_Site

Item

Body site where sample was collected

string

C0449705 (UMLS CUI [1,1])

Analyte_Type

Item

Analyte Type of the sample

string

C4744818 (UMLS CUI [1,1])

Analyte_Type

Code List

Analyte Type of the sample

CL Item

not available (indicating no depositied genotypes for this sample) (NA)

C0686905 (UMLS CUI [1,1])

Histological_Type

Item

Cell or tissue type or subtype of sample

string

C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C1292533 (UMLS CUI [2,1])
C0332307 (UMLS CUI [2,2])

Is_Tumor

Item

Tumor status

string

C0475752 (UMLS CUI [1,1])

DNA_Concentration

Item

Affymetrix PicoGreen concentration of the DNA sample

text

C0444245 (UMLS CUI [1,1])
C4085938 (UMLS CUI [1,2])
C0389638 (UMLS CUI [1,3])
C1446561 (UMLS CUI [1,4])

CVpct

Item

Coefficient of variation between two pico readings for a sample.

text

C0389638 (UMLS CUI [1,1])
C1975904 (UMLS CUI [1,2])

dQC

Item

Dish QC metric.

text

C0034378 (UMLS CUI [1,1])
C0699680 (UMLS CUI [1,2])

Cluster_CR

Item

The Axiom GT1 cluster call rate of the best array.

text

C3846158 (UMLS CUI [1,1])

Het_Rate

Item

(# heterozygous SNP genotypes)/(total # SNPs called)

text

C0752046 (UMLS CUI [1,1])
C4288115 (UMLS CUI [1,2])

Sample_Status

Item

Status of the sample based on Affymetrix QC metrics.

string

C0370003 (UMLS CUI [1,1])
C0449438 (UMLs CUI [1, 2])

Genotyping_Center

Item

Name of the center which conducted genotyping

string

C1707515 (UMLS CUI [1,1])

Genotyping_Center

Code List

Name of the center which conducted genotyping

CL Item

not available (indicating no depositied genotypes for this sample) (NA)

C0686905 (UMLS CUI [1,1])

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