Inglês

Sample ID, analyte type, body site where sample was obtained, protocols to extract total RNA, cell or tissue type of sample, tumor status of sample, protocols to remove rRNA from sequencing library, primary tumor, metastasis, or transformed cell line, primary tumor location, sequencing center, tissue type to extract total RNA for library construction, tumor grade, tumor stage, and tumor treatment of participants with breast cancer and involved in the "Sequence-Based Analysis of Human Breast Tumors" project.

5 Formulários  
pht003590
Descrição

pht003590

Alias
UMLS CUI [1,1]
C3846158
De-identified sample ID
Descrição

SAMPLE_ID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Descrição

BODY_SITE

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0449705
Analyte type
Descrição

ANALYTE_TYPE

Tipo de dados

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Descrição

IS_TUMOR

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Descrição

HISTOLOGICAL_TYPE

Tipo de dados

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Primary tumor, metastasis, or transformed cell line
Descrição

PRIMARY_METASTATIC_TUMOR

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0677930
UMLS CUI [2,1]
C0027627
UMLS CUI [3,1]
C0007601
Primary tumor location
Descrição

PRIMARY_TUMOR_LOCATION

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0475447
Name of the center which conducted sequencing
Descrição

SEQUENCING_CENTER

Tipo de dados

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C1561491
Type of tissues to extract total RNA for library construction
Descrição

TISSUE_TYPE

Tipo de dados

string

Alias
UMLS CUI [1,1]
C2713035
UMLS CUI [1,2]
C0035668
UMLS CUI [1,3]
C0185115
UMLS CUI [1,4]
C0023621
Protocols to remove rRNA from sequencing library
Descrição

LIBRARY_CONSTRUCTION_PROTOCOL

Tipo de dados

string

Alias
UMLS CUI [1,1]
C2348563
UMLS CUI [1,2]
C1883720
UMLS CUI [1,3]
C0035701
UMLS CUI [1,4]
C4688351
Protocols to extract total RNA
Descrição

EXTRACT_PROTOCOL

Tipo de dados

string

Alias
UMLS CUI [1,1]
C2348563
UMLS CUI [1,2]
C0185115
UMLS CUI [1,3]
C5235881
Tumor stage
Descrição

TUMOR_STAGE

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1300072
Tumor grade
Descrição

TUMOR_GRADE

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0919553
Tumor treatment
Descrição

TUMOR_TREATMENT

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0087111
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Similar models

Sample ID, analyte type, body site where sample was obtained, protocols to extract total RNA, cell or tissue type of sample, tumor status of sample, protocols to remove rRNA from sequencing library, primary tumor, metastasis, or transformed cell line, primary tumor location, sequencing center, tissue type to extract total RNA for library construction, tumor grade, tumor stage, and tumor treatment of participants with breast cancer and involved in the "Sequence-Based Analysis of Human Breast Tumors" project.

5 Formulários
Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
pht003590
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (Y)
C0027651 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
PRIMARY_METASTATIC_TUMOR
Item
Primary tumor, metastasis, or transformed cell line
string
C0677930 (UMLS CUI [1,1])
C0027627 (UMLS CUI [2,1])
C0007601 (UMLS CUI [3,1])
PRIMARY_TUMOR_LOCATION
Item
Primary tumor location
string
C0475447 (UMLS CUI [1,1])
SEQUENCING_CENTER
Item
Name of the center which conducted sequencing
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
TISSUE_TYPE
Item
Type of tissues to extract total RNA for library construction
string
C2713035 (UMLS CUI [1,1])
C0035668 (UMLS CUI [1,2])
C0185115 (UMLS CUI [1,3])
C0023621 (UMLS CUI [1,4])
LIBRARY_CONSTRUCTION_PROTOCOL
Item
Protocols to remove rRNA from sequencing library
string
C2348563 (UMLS CUI [1,1])
C1883720 (UMLS CUI [1,2])
C0035701 (UMLS CUI [1,3])
C4688351 (UMLS CUI [1,4])
EXTRACT_PROTOCOL
Item
Protocols to extract total RNA
string
C2348563 (UMLS CUI [1,1])
C0185115 (UMLS CUI [1,2])
C5235881 (UMLS CUI [1,3])
TUMOR_STAGE
Item
Tumor stage
text
C1300072 (UMLS CUI [1,1])
TUMOR_GRADE
Item
Tumor grade
text
C0919553 (UMLS CUI [1,1])
TUMOR_TREATMENT
Item
Tumor treatment
text
C0087111 (UMLS CUI [1,1])
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