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This sample attributes table includes body site where sample was extracted, analyte type, histological type, sample type, genotyping center, and sequencing center.

4 Formulär  
pht003814
Beskrivning

pht003814

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Beskrivning

SAMPLE_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Beskrivning

BODY_SITE

Datatyp

string

Alias
UMLS CUI [1,1]
C0449705
Cell or tissue type or subtype of sample
Beskrivning

HISTOLOGICAL_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Description of sample origin
Beskrivning

SAMPLE_TYPE

Datatyp

text

Alias
UMLS CUI [1,1]
C5419128
Analyte Type
Beskrivning

ANALYTE_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C4744818
Name of the center which conducted genotyping
Beskrivning

GENOTYPING_CENTER

Datatyp

text

Alias
UMLS CUI [1,1]
C2825181
UMLS CUI [1,2]
C1301943
UMLS CUI [1,3]
C1285573
Name of the center which conducted sequencing
Beskrivning

SEQUENCING_CENTER

Datatyp

text

Alias
UMLS CUI [1,1]
C2825181
UMLS CUI [1,2]
C1301943
UMLS CUI [1,3]
C1561491
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Similar models

This sample attributes table includes body site where sample was extracted, analyte type, histological type, sample type, genotyping center, and sequencing center.

4 Formulär
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht003814
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
Item
Description of sample origin
text
C5419128 (UMLS CUI [1,1])
SAMPLE_TYPE
Code List
Description of sample origin
CL Item
Distant metastatis disease (Metastasis)
CL Item
Normal adjacent liver (Normal)
CL Item
Local recurrence of primary tumor (Recurrent)
CL Item
Primary tumor (Tumor)
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Name of the center which conducted genotyping
text
C2825181 (UMLS CUI [1,1])
C1301943 (UMLS CUI [1,2])
C1285573 (UMLS CUI [1,3])
GENOTYPING_CENTER
Code List
Name of the center which conducted genotyping
CL Item
The Rockefeller University (The Rockefeller University)
Item
Name of the center which conducted sequencing
text
C2825181 (UMLS CUI [1,1])
C1301943 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
SEQUENCING_CENTER
Code List
Name of the center which conducted sequencing
CL Item
New York Genome Center (NYGC)
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