The dataset contains data describing participants' case/control status, HIV risk group (Latent Class Analysis, LCA), several LCA indicators (e.g. multiple partners, needle sharing, STD), viral load, and provides basic socio-demographic information. Note that multiple measurements (over time) are reported for some variables.

pht002650
Description

pht002650

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Description

subjid

Data type

string

Alias
UMLS CUI [1,1]
C2348585
Consent group as determined by DAC
Description

consent

Data type

text

Alias
UMLS CUI [1,1]
C0021430
Case - control status of the subject
Description

affection_status

Data type

text

Alias
UMLS CUI [1,1]
C3274646
HIV status
Description

hivstat

Data type

text

Alias
UMLS CUI [1,1]
C0458074
Viral Load Copies/mL
Description

ViralLoad_cperml

Data type

float

Alias
UMLS CUI [1,1]
C1168369
Viral Log 10
Description

ViralLoad_Log10

Data type

float

Alias
UMLS CUI [1,1]
C1168369
UMLS CUI [1,2]
C3873230
Participant reported sex
Description

sex

Data type

text

Alias
UMLS CUI [1,1]
C0079399
Self-reported ancestry of participant
Description

race

Data type

text

Alias
UMLS CUI [1,1]
C0015031
Reported age of participant
Description

age

Data type

text

Measurement units
  • Years
Alias
UMLS CUI [1,1]
C0001779
Years
Age strata used in frequency matching (</=37, 38-45, 46+)
Description

age_cat

Data type

text

Alias
UMLS CUI [1,1]
C3846158
Year participated in UHS (1986-2002)
Description

year

Data type

text

Alias
UMLS CUI [1,1]
C3846158
Year strata used in frequency matching (</= 1994; 1995+)
Description

year_cat

Data type

text

Alias
UMLS CUI [1,1]
C3846158
Latent Class Analysis (LCA) assigned HIV risk group used in frequency matching
Description

lca_group

Data type

text

Alias
UMLS CUI [1,1]
C4704739
UMLS CUI [1,2]
C0744979
Multiple sex partners in the past year, indicator used in LCA
Description

mpartners

Data type

text

Alias
UMLS CUI [1,1]
C0558265
UMLS CUI [1,2]
C4086728
Ever had sexually transmitted disease (excluding HIV), indicator used in LCA
Description

stis

Data type

text

Alias
UMLS CUI [1,1]
C0036916
UMLS CUI [1,2]
C0332300
UMLS CUI [1,3]
C0019682
Had receptive anal sex in the past 6 months, indicator used in LCA
Description

anal

Data type

text

Alias
UMLS CUI [1,1]
C0282347
UMLS CUI [1,2]
C3828652
Sharing needles in the past 30 days, indicator used in LCA
Description

needleshare

Data type

text

Alias
UMLS CUI [1,1]
C0085091
UMLS CUI [1,2]
C4331910
Participant ever traded sex for drugs or money, indicator used in LCA
Description

sexwork

Data type

text

Alias
UMLS CUI [1,1]
C0033595
Blinded site indicator - site 1 vs. 2
Description

site

Data type

text

Alias
UMLS CUI [1,1]
C3846158
Serum Sample ID
Description

sampid

Data type

text

Alias
UMLS CUI [1,1]
C5237951
UMLS CUI [1,2]
C1550100
Genotype identified sex
Description

gwassex

Data type

text

Alias
UMLS CUI [1,1]
C5236416
Record identified as individual appearing multiple times as inadvertant duplicate.
Description

cluster

Data type

text

Alias
UMLS CUI [1,1]
C0460112
UMLS CUI [1,2]
C0679646
Unique individual who was selected for inclusion in the investigators' final analysis data set, based on passing QC and having complete phenotype and covariate data.
Description

final_analysis

Data type

text

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0679646

Similar models

The dataset contains data describing participants' case/control status, HIV risk group (Latent Class Analysis, LCA), several LCA indicators (e.g. multiple partners, needle sharing, STD), viral load, and provides basic socio-demographic information. Note that multiple measurements (over time) are reported for some variables.

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht002650
C3846158 (UMLS CUI [1,1])
subjid
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
consent
Item
Consent group as determined by DAC
text
C0021430 (UMLS CUI [1,1])
affection_status
Item
Case - control status of the subject
text
C3274646 (UMLS CUI [1,1])
hivstat
Item
HIV status
text
C0458074 (UMLS CUI [1,1])
ViralLoad_cperml
Item
Viral Load Copies/mL
float
C1168369 (UMLS CUI [1,1])
ViralLoad_Log10
Item
Viral Log 10
float
C1168369 (UMLS CUI [1,1])
C3873230 (UMLS CUI [1,2])
sex
Item
Participant reported sex
text
C0079399 (UMLS CUI [1,1])
race
Item
Self-reported ancestry of participant
text
C0015031 (UMLS CUI [1,1])
age
Item
Reported age of participant
text
C0001779 (UMLS CUI [1,1])
age_cat
Item
Age strata used in frequency matching (</=37, 38-45, 46+)
text
C3846158 (UMLS CUI [1,1])
year
Item
Year participated in UHS (1986-2002)
text
C3846158 (UMLS CUI [1,1])
year_cat
Item
Year strata used in frequency matching (</= 1994; 1995+)
text
C3846158 (UMLS CUI [1,1])
lca_group
Item
Latent Class Analysis (LCA) assigned HIV risk group used in frequency matching
text
C4704739 (UMLS CUI [1,1])
C0744979 (UMLS CUI [1,2])
mpartners
Item
Multiple sex partners in the past year, indicator used in LCA
text
C0558265 (UMLS CUI [1,1])
C4086728 (UMLS CUI [1,2])
stis
Item
Ever had sexually transmitted disease (excluding HIV), indicator used in LCA
text
C0036916 (UMLS CUI [1,1])
C0332300 (UMLS CUI [1,2])
C0019682 (UMLS CUI [1,3])
anal
Item
Had receptive anal sex in the past 6 months, indicator used in LCA
text
C0282347 (UMLS CUI [1,1])
C3828652 (UMLS CUI [1,2])
needleshare
Item
Sharing needles in the past 30 days, indicator used in LCA
text
C0085091 (UMLS CUI [1,1])
C4331910 (UMLS CUI [1,2])
sexwork
Item
Participant ever traded sex for drugs or money, indicator used in LCA
text
C0033595 (UMLS CUI [1,1])
site
Item
Blinded site indicator - site 1 vs. 2
text
C3846158 (UMLS CUI [1,1])
sampid
Item
Serum Sample ID
text
C5237951 (UMLS CUI [1,1])
C1550100 (UMLS CUI [1,2])
gwassex
Item
Genotype identified sex
text
C5236416 (UMLS CUI [1,1])
cluster
Item
Record identified as individual appearing multiple times as inadvertant duplicate.
text
C0460112 (UMLS CUI [1,1])
C0679646 (UMLS CUI [1,2])
final_analysis
Item
Unique individual who was selected for inclusion in the investigators' final analysis data set, based on passing QC and having complete phenotype and covariate data.
text
C1512693 (UMLS CUI [1,1])
C0679646 (UMLS CUI [1,2])