English

Sample ID, analyte type [somatic or genomic DNA, total RNA], sample type [tumor or normal], type of material, body site where sample was collected, anatomical zone of the prostate from which sample derived, tumor grade, RNA integrity number of RNA sample, Gleason Score, fusion status of TMPRSS2-ERG gene of participant tumor, and percent of tumor specimen with grade 4 or 5 histology of samples obtained from participants with prostate cancer and involved in the "Prostate Cancer Genome Sequencing Project" project.

5 forms  
pht002582
Description

pht002582

De-identified sample ID
Description

SAMPID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Sample type [tumor, normal]
Description

SAMPLE_TYPE

Data type

text

Alias
UMLS CUI [1,1]
C2347029
Analyte Type [DNA Somatic, DNA Genomic, DNA WGA Cleaned, Total RNA]
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
Type of material
Description

Original Material Type

Data type

text

Alias
UMLS CUI [1,1]
C2713035
Body site where sample was collected
Description

Tissue Site

Data type

string

Alias
UMLS CUI [1,1]
C0449705
Anatomical zone of the prostate from which sample derived [Peripheral Zone (PZ), Transitional Zone (TZ), Central Zone (CZ), Central Zone (CZ)/Peripheral Zone (PZ), Peripheral Zone (PZ)/Central Zone (Cz)]
Description

Sample Zonal Origin

Data type

text

Alias
UMLS CUI [1,1]
C0932029
UMLS CUI [1,2]
C0586599
UMLS CUI [1,3]
C1550535
Indicates level of cell differentiation of participant tumor [Normal, Low grade/Well-differentiated, Intermediate grade/Moderately-differentiated, High grade/Poorly-differentiated, Anaplastic]
Description

Histologic Grade

Data type

text

Alias
UMLS CUI [1,1]
C0441889
UMLS CUI [1,2]
C0007589
UMLS CUI [1,3]
C0027651
RNA integrity number of RNA sample [N/A]
Description

RIN Number

Data type

text

Alias
UMLS CUI [1,1]
C1882531
UMLS CUI [1,2]
C5420592
Composite score of histological grades of participant tumor reflecting severity of disease
Description

Gleason Score

Data type

text

Alias
UMLS CUI [1,1]
C4055211
UMLS CUI [1,2]
C0521117
TMPRSS2-ERG gene fusion status of participant tumor [Negative, Positive, Fusion with interstitial deletion]
Description

TMPRSS2-ERG Fusion Status

Data type

text

Alias
UMLS CUI [1,1]
C2826126
Percent of participant tumor specimen with grade 4 or 5 histology
Description

% Pattern Field

Data type

text

Measurement units
  • %
Alias
UMLS CUI [1,1]
C0439165
UMLS CUI [1,2]
C0919553
%
Back to the top of the page

Similar models

Sample ID, analyte type [somatic or genomic DNA, total RNA], sample type [tumor or normal], type of material, body site where sample was collected, anatomical zone of the prostate from which sample derived, tumor grade, RNA integrity number of RNA sample, Gleason Score, fusion status of TMPRSS2-ERG gene of participant tumor, and percent of tumor specimen with grade 4 or 5 histology of samples obtained from participants with prostate cancer and involved in the "Prostate Cancer Genome Sequencing Project" project.

5 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht002582
SAMPID
Item
De-identified sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
SAMPLE_TYPE
Item
Sample type [tumor, normal]
text
C2347029 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type [DNA Somatic, DNA Genomic, DNA WGA Cleaned, Total RNA]
string
C4744818 (UMLS CUI [1,1])
Original Material Type
Item
Type of material
text
C2713035 (UMLS CUI [1,1])
Tissue Site
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
Sample Zonal Origin
Item
Anatomical zone of the prostate from which sample derived [Peripheral Zone (PZ), Transitional Zone (TZ), Central Zone (CZ), Central Zone (CZ)/Peripheral Zone (PZ), Peripheral Zone (PZ)/Central Zone (Cz)]
text
C0932029 (UMLS CUI [1,1])
C0586599 (UMLS CUI [1,2])
C1550535 (UMLS CUI [1,3])
Histologic Grade
Item
Indicates level of cell differentiation of participant tumor [Normal, Low grade/Well-differentiated, Intermediate grade/Moderately-differentiated, High grade/Poorly-differentiated, Anaplastic]
text
C0441889 (UMLS CUI [1,1])
C0007589 (UMLS CUI [1,2])
C0027651 (UMLS CUI [1,3])
RIN Number
Item
RNA integrity number of RNA sample [N/A]
text
C1882531 (UMLS CUI [1,1])
C5420592 (UMLS CUI [1,2])
Gleason Score
Item
Composite score of histological grades of participant tumor reflecting severity of disease
text
C4055211 (UMLS CUI [1,1])
C0521117 (UMLS CUI [1,2])
TMPRSS2-ERG Fusion Status
Item
TMPRSS2-ERG gene fusion status of participant tumor [Negative, Positive, Fusion with interstitial deletion]
text
C2826126 (UMLS CUI [1,1])
% Pattern Field
Item
Percent of participant tumor specimen with grade 4 or 5 histology
text
C0439165 (UMLS CUI [1,1])
C0919553 (UMLS CUI [1,2])
Back to the top of the page