Engelsk

The subject sample data table contains mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes a mapping of sample IDs to other sample ID aliases, pooled sample IDs, and sample use.

6 Formulär  
pht003133
Beskrivning

pht003133

Subject ID
Beskrivning

SUBJID

Datatyp

string

Alias
UMLS CUI [1,1]
C2348585
Sample ID
Beskrivning

SAMPID

Datatyp

string

Alias
UMLS CUI [1,1]
C1299222
Source repository where samples originate
Beskrivning

SAMP_SOURCE

Datatyp

string

Alias
UMLS CUI [1,1]
C0449416
UMLS CUI [1,2]
C3847505
Sample ID used in the Source Repository
Beskrivning

SOURCE_SAMPID

Datatyp

string

Alias
UMLS CUI [1,1]
C2348585
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C3847505
Sample ID created for pooled samples
Beskrivning

POOLED_SAMPID

Datatyp

string

Alias
UMLS CUI [1,1]
C1299222
UMLS CUI [1,2]
C1509144
Sample use. SNP_Array: SNP genotypes obtained using standard or custom microarrays; WES_SRA: Whole exome sequencing data available through SRA
Beskrivning

SAMPLE_USE

Datatyp

text

Alias
UMLS CUI [1,1]
C1524063
UMLS CUI [1,2]
C0370003
UMLS CUI [1,3]
C3897601
UMLS CUI [1,4]
C3640077
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Similar models

The subject sample data table contains mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes a mapping of sample IDs to other sample ID aliases, pooled sample IDs, and sample use.

6 Formulär
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht003133
SUBJID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
SAMPID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
SAMP_SOURCE
Item
Source repository where samples originate
string
C0449416 (UMLS CUI [1,1])
C3847505 (UMLS CUI [1,2])
SOURCE_SAMPID
Item
Sample ID used in the Source Repository
string
C2348585 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C3847505 (UMLS CUI [1,3])
POOLED_SAMPID
Item
Sample ID created for pooled samples
string
C1299222 (UMLS CUI [1,1])
C1509144 (UMLS CUI [1,2])
SAMPLE_USE
Item
Sample use. SNP_Array: SNP genotypes obtained using standard or custom microarrays; WES_SRA: Whole exome sequencing data available through SRA
text
C1524063 (UMLS CUI [1,1])
C0370003 (UMLS CUI [1,2])
C3897601 (UMLS CUI [1,3])
C3640077 (UMLS CUI [1,4])
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