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The data table contains phenotype data which provide the diagnosis and year of diagnosis of Ulcerative Colitis (UC) or Indeterminate Colitis (IC) and cancer, IBD comorbidities, such as affected joints, skin, eye, and liver (n=11 variables), treatment/surgery (n=7 variables), and UC disease location (n=5 variables). Variables of environmental factors such as smoking (n=4 variables), medical history of first and second degree relatives (n=14 variables) and sociodemographic variables of Jewish and non-Jewish ancestry (n=11 variables) are included. Subjects are also marked for whether they were included in the conditional analysis of HumanHap300 or HumanHap550 markers.

4 Formulieren  
pht002376
Beschrijving

pht002376

Subject ID
Beschrijving

subjid

Datatype

string

Alias
UMLS CUI [1,1]
C2348585
Disease type
Beschrijving

diag

Datatype

text

Alias
UMLS CUI [1,1]
C3699655
Sex
Beschrijving

sex

Datatype

text

Alias
UMLS CUI [1,1]
C0079399
Year of birth
Beschrijving

yob

Datatype

text

Alias
UMLS CUI [1,1]
C2826771
Race (self-report)
Beschrijving

race

Datatype

text

Alias
UMLS CUI [1,1]
C0034510
UMLS CUI [1,2]
C2700446
Hispanic ethnicity (self-report)
Beschrijving

hispanic

Datatype

text

Alias
UMLS CUI [1,1]
C2700446
UMLS CUI [1,2]
C0086409
Jewish ethnicity (self-report)
Beschrijving

jewish

Datatype

text

Alias
UMLS CUI [1,1]
C2700446
UMLS CUI [1,2]
C0022422
Jewish paternal grandfather
Beschrijving

pgfthr_j

Datatype

text

Alias
UMLS CUI [1,1]
C0178443
UMLS CUI [1,2]
C3272879
Ashkenazi paternal grandfather
Beschrijving

pgfthr_a

Datatype

text

Alias
UMLS CUI [1,1]
C0337704
UMLS CUI [1,2]
C3272879
Jewish paternal grandmother
Beschrijving

pgmthr_j

Datatype

text

Alias
UMLS CUI [1,1]
C3272880
UMLS CUI [1,2]
C0178443
Ashkenazi paternal grandmother
Beschrijving

pgmthr_a

Datatype

text

Alias
UMLS CUI [1,1]
C0337704
UMLS CUI [1,2]
C3272880
Jewish maternal grandfather
Beschrijving

mgfthr_j

Datatype

text

Alias
UMLS CUI [1,1]
C0178443
UMLS CUI [1,2]
C1273523
Ashkenazi materal grandfather
Beschrijving

mgfthr_a

Datatype

text

Alias
UMLS CUI [1,1]
C0337704
UMLS CUI [1,2]
C1273523
Jewish maternal grandmother
Beschrijving

mgmthr_j

Datatype

text

Alias
UMLS CUI [1,1]
C0178443
UMLS CUI [1,2]
C1273525
Ashkenazi maternal grandmother
Beschrijving

mgmthr_a

Datatype

text

Alias
UMLS CUI [1,1]
C1273525
UMLS CUI [1,2]
C0337704
Year of diagnosis
Beschrijving

diag_yr

Datatype

text

Alias
UMLS CUI [1,1]
C0439234
UMLS CUI [1,2]
C0011900
Year of last clinical exam/encounter
Beschrijving

review

Datatype

float

Alias
UMLS CUI [1,1]
C0805839
Father's IBD affection status
Beschrijving

fthr_ibd

Datatype

text

Alias
UMLS CUI [1,1]
C0021390
UMLS CUI [1,2]
C0262926
UMLS CUI [1,3]
C0241889
UMLS CUI [1,4]
C0015671
Mother's IBD affection status
Beschrijving

mthr_ibd

Datatype

text

Alias
UMLS CUI [1,1]
C0021390
UMLS CUI [1,2]
C0026591
UMLS CUI [1,3]
C0262926
UMLS CUI [1,4]
C0241889
No. of siblings with CD
Beschrijving

sib_cd

Datatype

text

Alias
UMLS CUI [1,1]
C0557094
UMLS CUI [1,2]
C0010346
No. of siblings with UC/IC
Beschrijving

sib_uc

Datatype

text

Alias
UMLS CUI [1,1]
C0557094
UMLS CUI [1,2]
C0009324
UMLS CUI [1,3]
C0282488
No. of siblings with IBD (type unclear)
Beschrijving

sib_ibd

Datatype

text

Alias
UMLS CUI [1,1]
C0557094
UMLS CUI [1,2]
C0021390
No. of unaffected siblings
Beschrijving

sib_unf

Datatype

text

Alias
UMLS CUI [1,1]
C0557094
UMLS CUI [1,2]
C0522477
No. of siblings with unknown status
Beschrijving

sib_unk

Datatype

text

Alias
UMLS CUI [1,1]
C0557094
UMLS CUI [1,2]
C0449438
UMLS CUI [1,3]
C0439673
No. of children with CD
Beschrijving

chld_cd

Datatype

text

Alias
UMLS CUI [1,1]
C2229974
UMLS CUI [1,2]
C0010346
No. of children with UC
Beschrijving

chld_uc

Datatype

text

Alias
UMLS CUI [1,1]
C2229974
UMLS CUI [1,2]
C0009324
No. of children with IBD (type unclear)
Beschrijving

chld_ibd

Datatype

text

Alias
UMLS CUI [1,1]
C2229974
UMLS CUI [1,2]
C0021390
No. of unaffected children
Beschrijving

chld_unf

Datatype

text

Alias
UMLS CUI [1,1]
C2229974
UMLS CUI [1,2]
C0522477
No. of children with unknown status
Beschrijving

chld_unk

Datatype

text

Alias
UMLS CUI [1,1]
C2229974
UMLS CUI [1,2]
C0449438
UMLS CUI [1,3]
C0439673
Family history of IBD in 2nd degree relatives
Beschrijving

fam_hist

Datatype

text

Alias
UMLS CUI [1,1]
C0241889
UMLS CUI [1,2]
C1519210
UMLS CUI [1,3]
C0522476
UMLS CUI [1,4]
C0021390
Family type (CD/UC/Mixed/Unknown)
Beschrijving

fam_type

Datatype

text

Alias
UMLS CUI [1,1]
C0015576
UMLS CUI [1,2]
C0332307
Smoking status at diagnosis
Beschrijving

smoking

Datatype

text

Alias
UMLS CUI [1,1]
C1519386
UMLS CUI [1,2]
C0011008
UMLS CUI [1,3]
C0011900
Year started smoking
Beschrijving

smokstrt

Datatype

text

Alias
UMLS CUI [1,1]
C0439234
UMLS CUI [1,2]
C0808070
UMLS CUI [1,3]
C0543414
Year stopped smoking
Beschrijving

smokstop

Datatype

text

Alias
UMLS CUI [1,1]
C0439234
UMLS CUI [1,2]
C0011008
UMLS CUI [1,3]
C0425310
No. of cigarettes smoked per day
Beschrijving

no_cigar

Datatype

text

Alias
UMLS CUI [1,1]
C3694146
UC disease location: Proctitis
Beschrijving

proctit

Datatype

text

Alias
UMLS CUI [1,1]
C0009324
UMLS CUI [1,2]
C0450429
UMLS CUI [1,3]
C2986546
UMLS CUI [1,4]
C0033246
UC disease location: Left-sided (to splenic flexure)
Beschrijving

left

Datatype

text

Alias
UMLS CUI [1,1]
C0009324
UMLS CUI [1,2]
C0450429
UMLS CUI [1,3]
C2986546
UMLS CUI [1,4]
C0205091
UC disease location: Extensive (beyond splenic flexure)
Beschrijving

extensiv

Datatype

text

Alias
UMLS CUI [1,1]
C0009324
UMLS CUI [1,2]
C0450429
UMLS CUI [1,3]
C2986546
UMLS CUI [1,4]
C0205231
UC disease location: Periappendiceal inflammation
Beschrijving

pi

Datatype

text

Alias
UMLS CUI [1,1]
C0009324
UMLS CUI [1,2]
C0450429
UMLS CUI [1,3]
C2986546
UMLS CUI [1,4]
C0021368
UMLS CUI [1,5]
C0003617
Surgery for treatment of CD/UC
Beschrijving

surgery

Datatype

text

Alias
UMLS CUI [1,1]
C0543467
UMLS CUI [1,2]
C0087111
UMLS CUI [1,3]
C0010346
UMLS CUI [1,4]
C0009324
Year of first operation (CD) or colectomy (UC/IC)
Beschrijving

surg_yr

Datatype

text

Alias
UMLS CUI [1,1]
C0439234
UMLS CUI [1,2]
C0205435
UMLS CUI [1,3]
C0543467
UMLS CUI [1,4]
C0010346
UMLS CUI [2,1]
C0439234
UMLS CUI [2,2]
C0009274
UMLS CUI [2,3]
C0009324
Surgery for dysplasia/cancer (UC/IC only)
Beschrijving

surg_dys

Datatype

text

Alias
UMLS CUI [1,1]
C0543467
UMLS CUI [1,2]
C0334044
UMLS CUI [1,3]
C0006826
UMLS CUI [1,4]
C0009324
Surgery for chronic continuous disease (UC/IC only)
Beschrijving

surg_chr

Datatype

text

Alias
UMLS CUI [1,1]
C0543467
UMLS CUI [1,2]
C0008679
UMLS CUI [1,3]
C0549178
UMLS CUI [1,4]
C0009324
Surgery for acute fulminant disease (UC/IC only)
Beschrijving

surg_acu

Datatype

text

Alias
UMLS CUI [1,1]
C0543467
UMLS CUI [1,2]
C0001314
UMLS CUI [1,3]
C0009324
Diagnosis of dysplasia/cancer (UC/IC only)
Beschrijving

cancer

Datatype

text

Alias
UMLS CUI [1,1]
C0011900
UMLS CUI [1,2]
C0334044
UMLS CUI [1,3]
C0006826
UMLS CUI [1,4]
C0009324
Appendectomy
Beschrijving

append

Datatype

text

Alias
UMLS CUI [1,1]
C1512698
UMLS CUI [1,2]
C0884358
UMLS CUI [1,3]
C0003611
Year of appendectomy
Beschrijving

app_yr

Datatype

text

Alias
UMLS CUI [1,1]
C0439234
UMLS CUI [1,2]
C0003611
Joints: Large joint related to disease activity
Beschrijving

j_large

Datatype

text

Alias
UMLS CUI [1,1]
C0549177
UMLS CUI [1,2]
C0022417
UMLS CUI [1,3]
C0012634
UMLS CUI [1,4]
C0205177
Joints: Small joint unrelated to disease activity
Beschrijving

j_small

Datatype

text

Alias
UMLS CUI [1,1]
C0700321
UMLS CUI [1,2]
C0022417
UMLS CUI [1,3]
C0445356
UMLS CUI [1,4]
C0012634
UMLS CUI [1,5]
C0205177
Joints: Ankylosing spondylitis
Beschrijving

j_as

Datatype

text

Alias
UMLS CUI [1,1]
C0038013
Joints: Sacro-iliitis
Beschrijving

j_si

Datatype

text

Alias
UMLS CUI [1,1]
C0574960
Joints: Non-specific joint inflammation
Beschrijving

j_nonsp

Datatype

text

Alias
UMLS CUI [1,1]
C0574941
UMLS CUI [1,2]
C0205370
Skin: Erythema nodosum
Beschrijving

skin_en

Datatype

text

Alias
UMLS CUI [1,1]
C0014743
Skin: Pyoderma
Beschrijving

skin_py

Datatype

text

Alias
UMLS CUI [1,1]
C0085652
Eyes: Uveitis
Beschrijving

eye_uv

Datatype

text

Alias
UMLS CUI [1,1]
C0042164
Eyes: Episcleritis
Beschrijving

eye_ep

Datatype

text

Alias
UMLS CUI [1,1]
C0014583
Eyes: Undiagnosed ocular inflammation
Beschrijving

eye_uoi

Datatype

text

Alias
UMLS CUI [1,1]
C0243095
UMLS CUI [1,2]
C1408353
UMLS CUI [1,3]
C1299003
UMLS CUI [1,4]
C0021368
Liver: Primary sclerosing cholangitis
Beschrijving

liv_psc

Datatype

text

Alias
UMLS CUI [1,1]
C0566602
Included in conditional analysis of HumanHap300 markers
Beschrijving

hh300

Datatype

text

Alias
UMLS CUI [1,1]
C1701901
UMLS CUI [1,2]
C1513380
Included in conditional analysis of HumanHap550 markers
Beschrijving

hh550

Datatype

text

Alias
UMLS CUI [1,1]
C1701901
UMLS CUI [1,2]
C1513380
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The data table contains phenotype data which provide the diagnosis and year of diagnosis of Ulcerative Colitis (UC) or Indeterminate Colitis (IC) and cancer, IBD comorbidities, such as affected joints, skin, eye, and liver (n=11 variables), treatment/surgery (n=7 variables), and UC disease location (n=5 variables). Variables of environmental factors such as smoking (n=4 variables), medical history of first and second degree relatives (n=14 variables) and sociodemographic variables of Jewish and non-Jewish ancestry (n=11 variables) are included. Subjects are also marked for whether they were included in the conditional analysis of HumanHap300 or HumanHap550 markers.

4 Formulieren
Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht002376
subjid
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
Item
Disease type
text
C3699655 (UMLS CUI [1,1])
diag
Code List
Disease type
CL Item
CD (1)
CL Item
IC (2)
CL Item
UC (3)
Item
Sex
text
C0079399 (UMLS CUI [1,1])
sex
Code List
Sex
CL Item
Male (1)
CL Item
Female (2)
yob
Item
Year of birth
text
C2826771 (UMLS CUI [1,1])
Item
Race (self-report)
text
C0034510 (UMLS CUI [1,1])
C2700446 (UMLS CUI [1,2])
race
Code List
Race (self-report)
CL Item
White (1)
CL Item
Black/African American (2)
CL Item
Asian (3)
CL Item
American Indian/Alaskan Native (4)
CL Item
Native Hawaiian/Pacific Islander (5)
CL Item
Other (6)
CL Item
Unknown (7)
Item
Hispanic ethnicity (self-report)
text
C2700446 (UMLS CUI [1,1])
C0086409 (UMLS CUI [1,2])
hispanic
Code List
Hispanic ethnicity (self-report)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Jewish ethnicity (self-report)
text
C2700446 (UMLS CUI [1,1])
C0022422 (UMLS CUI [1,2])
jewish
Code List
Jewish ethnicity (self-report)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Jewish paternal grandfather
text
C0178443 (UMLS CUI [1,1])
C3272879 (UMLS CUI [1,2])
pgfthr_j
Code List
Jewish paternal grandfather
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Ashkenazi paternal grandfather
text
C0337704 (UMLS CUI [1,1])
C3272879 (UMLS CUI [1,2])
pgfthr_a
Code List
Ashkenazi paternal grandfather
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Jewish paternal grandmother
text
C3272880 (UMLS CUI [1,1])
C0178443 (UMLS CUI [1,2])
pgmthr_j
Code List
Jewish paternal grandmother
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Ashkenazi paternal grandmother
text
C0337704 (UMLS CUI [1,1])
C3272880 (UMLS CUI [1,2])
pgmthr_a
Code List
Ashkenazi paternal grandmother
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Jewish maternal grandfather
text
C0178443 (UMLS CUI [1,1])
C1273523 (UMLS CUI [1,2])
mgfthr_j
Code List
Jewish maternal grandfather
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Ashkenazi materal grandfather
text
C0337704 (UMLS CUI [1,1])
C1273523 (UMLS CUI [1,2])
mgfthr_a
Code List
Ashkenazi materal grandfather
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Jewish maternal grandmother
text
C0178443 (UMLS CUI [1,1])
C1273525 (UMLS CUI [1,2])
mgmthr_j
Code List
Jewish maternal grandmother
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Ashkenazi maternal grandmother
text
C1273525 (UMLS CUI [1,1])
C0337704 (UMLS CUI [1,2])
mgmthr_a
Code List
Ashkenazi maternal grandmother
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
diag_yr
Item
Year of diagnosis
text
C0439234 (UMLS CUI [1,1])
C0011900 (UMLS CUI [1,2])
review
Item
Year of last clinical exam/encounter
float
C0805839 (UMLS CUI [1,1])
Item
Father's IBD affection status
text
C0021390 (UMLS CUI [1,1])
C0262926 (UMLS CUI [1,2])
C0241889 (UMLS CUI [1,3])
C0015671 (UMLS CUI [1,4])
fthr_ibd
Code List
Father's IBD affection status
CL Item
CD (1)
CL Item
UC/IC (2)
CL Item
IBD affected (type unclear) (3)
CL Item
Unaffected (4)
CL Item
Unknown (5)
Item
Mother's IBD affection status
text
C0021390 (UMLS CUI [1,1])
C0026591 (UMLS CUI [1,2])
C0262926 (UMLS CUI [1,3])
C0241889 (UMLS CUI [1,4])
mthr_ibd
Code List
Mother's IBD affection status
CL Item
CD (1)
CL Item
UC/IC (2)
CL Item
IBD affected (type unclear) (3)
CL Item
Unaffected (4)
CL Item
Unknown (5)
sib_cd
Item
No. of siblings with CD
text
C0557094 (UMLS CUI [1,1])
C0010346 (UMLS CUI [1,2])
sib_uc
Item
No. of siblings with UC/IC
text
C0557094 (UMLS CUI [1,1])
C0009324 (UMLS CUI [1,2])
C0282488 (UMLS CUI [1,3])
sib_ibd
Item
No. of siblings with IBD (type unclear)
text
C0557094 (UMLS CUI [1,1])
C0021390 (UMLS CUI [1,2])
sib_unf
Item
No. of unaffected siblings
text
C0557094 (UMLS CUI [1,1])
C0522477 (UMLS CUI [1,2])
sib_unk
Item
No. of siblings with unknown status
text
C0557094 (UMLS CUI [1,1])
C0449438 (UMLS CUI [1,2])
C0439673 (UMLS CUI [1,3])
chld_cd
Item
No. of children with CD
text
C2229974 (UMLS CUI [1,1])
C0010346 (UMLS CUI [1,2])
chld_uc
Item
No. of children with UC
text
C2229974 (UMLS CUI [1,1])
C0009324 (UMLS CUI [1,2])
chld_ibd
Item
No. of children with IBD (type unclear)
text
C2229974 (UMLS CUI [1,1])
C0021390 (UMLS CUI [1,2])
chld_unf
Item
No. of unaffected children
text
C2229974 (UMLS CUI [1,1])
C0522477 (UMLS CUI [1,2])
chld_unk
Item
No. of children with unknown status
text
C2229974 (UMLS CUI [1,1])
C0449438 (UMLS CUI [1,2])
C0439673 (UMLS CUI [1,3])
Item
Family history of IBD in 2nd degree relatives
text
C0241889 (UMLS CUI [1,1])
C1519210 (UMLS CUI [1,2])
C0522476 (UMLS CUI [1,3])
C0021390 (UMLS CUI [1,4])
fam_hist
Code List
Family history of IBD in 2nd degree relatives
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Family type (CD/UC/Mixed/Unknown)
text
C0015576 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
fam_type
Code List
Family type (CD/UC/Mixed/Unknown)
CL Item
CD (1)
CL Item
UC (2)
CL Item
Mixed (3)
CL Item
Unknown (4)
Item
Smoking status at diagnosis
text
C1519386 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0011900 (UMLS CUI [1,3])
smoking
Code List
Smoking status at diagnosis
CL Item
Current (1)
CL Item
Ex-smoker (2)
CL Item
No (3)
CL Item
Unknown (4)
smokstrt
Item
Year started smoking
text
C0439234 (UMLS CUI [1,1])
C0808070 (UMLS CUI [1,2])
C0543414 (UMLS CUI [1,3])
smokstop
Item
Year stopped smoking
text
C0439234 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0425310 (UMLS CUI [1,3])
no_cigar
Item
No. of cigarettes smoked per day
text
C3694146 (UMLS CUI [1,1])
Item
UC disease location: Proctitis
text
C0009324 (UMLS CUI [1,1])
C0450429 (UMLS CUI [1,2])
C2986546 (UMLS CUI [1,3])
C0033246 (UMLS CUI [1,4])
proctit
Code List
UC disease location: Proctitis
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
UC disease location: Left-sided (to splenic flexure)
text
C0009324 (UMLS CUI [1,1])
C0450429 (UMLS CUI [1,2])
C2986546 (UMLS CUI [1,3])
C0205091 (UMLS CUI [1,4])
left
Code List
UC disease location: Left-sided (to splenic flexure)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
UC disease location: Extensive (beyond splenic flexure)
text
C0009324 (UMLS CUI [1,1])
C0450429 (UMLS CUI [1,2])
C2986546 (UMLS CUI [1,3])
C0205231 (UMLS CUI [1,4])
extensiv
Code List
UC disease location: Extensive (beyond splenic flexure)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
UC disease location: Periappendiceal inflammation
text
C0009324 (UMLS CUI [1,1])
C0450429 (UMLS CUI [1,2])
C2986546 (UMLS CUI [1,3])
C0021368 (UMLS CUI [1,4])
C0003617 (UMLS CUI [1,5])
pi
Code List
UC disease location: Periappendiceal inflammation
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Surgery for treatment of CD/UC
text
C0543467 (UMLS CUI [1,1])
C0087111 (UMLS CUI [1,2])
C0010346 (UMLS CUI [1,3])
C0009324 (UMLS CUI [1,4])
surgery
Code List
Surgery for treatment of CD/UC
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
surg_yr
Item
Year of first operation (CD) or colectomy (UC/IC)
text
C0439234 (UMLS CUI [1,1])
C0205435 (UMLS CUI [1,2])
C0543467 (UMLS CUI [1,3])
C0010346 (UMLS CUI [1,4])
C0439234 (UMLS CUI [2,1])
C0009274 (UMLS CUI [2,2])
C0009324 (UMLS CUI [2,3])
Item
Surgery for dysplasia/cancer (UC/IC only)
text
C0543467 (UMLS CUI [1,1])
C0334044 (UMLS CUI [1,2])
C0006826 (UMLS CUI [1,3])
C0009324 (UMLS CUI [1,4])
surg_dys
Code List
Surgery for dysplasia/cancer (UC/IC only)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Surgery for chronic continuous disease (UC/IC only)
text
C0543467 (UMLS CUI [1,1])
C0008679 (UMLS CUI [1,2])
C0549178 (UMLS CUI [1,3])
C0009324 (UMLS CUI [1,4])
surg_chr
Code List
Surgery for chronic continuous disease (UC/IC only)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Surgery for acute fulminant disease (UC/IC only)
text
C0543467 (UMLS CUI [1,1])
C0001314 (UMLS CUI [1,2])
C0009324 (UMLS CUI [1,3])
surg_acu
Code List
Surgery for acute fulminant disease (UC/IC only)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Diagnosis of dysplasia/cancer (UC/IC only)
text
C0011900 (UMLS CUI [1,1])
C0334044 (UMLS CUI [1,2])
C0006826 (UMLS CUI [1,3])
C0009324 (UMLS CUI [1,4])
cancer
Code List
Diagnosis of dysplasia/cancer (UC/IC only)
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Appendectomy
text
C1512698 (UMLS CUI [1,1])
C0884358 (UMLS CUI [1,2])
C0003611 (UMLS CUI [1,3])
append
Code List
Appendectomy
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
app_yr
Item
Year of appendectomy
text
C0439234 (UMLS CUI [1,1])
C0003611 (UMLS CUI [1,2])
Item
Joints: Large joint related to disease activity
text
C0549177 (UMLS CUI [1,1])
C0022417 (UMLS CUI [1,2])
C0012634 (UMLS CUI [1,3])
C0205177 (UMLS CUI [1,4])
j_large
Code List
Joints: Large joint related to disease activity
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Joints: Small joint unrelated to disease activity
text
C0700321 (UMLS CUI [1,1])
C0022417 (UMLS CUI [1,2])
C0445356 (UMLS CUI [1,3])
C0012634 (UMLS CUI [1,4])
C0205177 (UMLS CUI [1,5])
j_small
Code List
Joints: Small joint unrelated to disease activity
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Joints: Ankylosing spondylitis
text
C0038013 (UMLS CUI [1,1])
j_as
Code List
Joints: Ankylosing spondylitis
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Joints: Sacro-iliitis
text
C0574960 (UMLS CUI [1,1])
j_si
Code List
Joints: Sacro-iliitis
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Joints: Non-specific joint inflammation
text
C0574941 (UMLS CUI [1,1])
C0205370 (UMLS CUI [1,2])
j_nonsp
Code List
Joints: Non-specific joint inflammation
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Skin: Erythema nodosum
text
C0014743 (UMLS CUI [1,1])
skin_en
Code List
Skin: Erythema nodosum
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Skin: Pyoderma
text
C0085652 (UMLS CUI [1,1])
skin_py
Code List
Skin: Pyoderma
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Eyes: Uveitis
text
C0042164 (UMLS CUI [1,1])
eye_uv
Code List
Eyes: Uveitis
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Eyes: Episcleritis
text
C0014583 (UMLS CUI [1,1])
eye_ep
Code List
Eyes: Episcleritis
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Eyes: Undiagnosed ocular inflammation
text
C0243095 (UMLS CUI [1,1])
C1408353 (UMLS CUI [1,2])
C1299003 (UMLS CUI [1,3])
C0021368 (UMLS CUI [1,4])
eye_uoi
Code List
Eyes: Undiagnosed ocular inflammation
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Liver: Primary sclerosing cholangitis
text
C0566602 (UMLS CUI [1,1])
liv_psc
Code List
Liver: Primary sclerosing cholangitis
CL Item
Yes (1)
CL Item
No (2)
CL Item
Unknown (3)
Item
Included in conditional analysis of HumanHap300 markers
text
C1701901 (UMLS CUI [1,1])
C1513380 (UMLS CUI [1,2])
hh300
Code List
Included in conditional analysis of HumanHap300 markers
CL Item
Excluded (0)
CL Item
Included (1)
Item
Included in conditional analysis of HumanHap550 markers
text
C1701901 (UMLS CUI [1,1])
C1513380 (UMLS CUI [1,2])
hh550
Code List
Included in conditional analysis of HumanHap550 markers
CL Item
Excluded (0)
CL Item
Included (1)
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