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The sample attributes table includes longitudinal sample ID, body site where sample was collected, analyte type, tumor status, histological type, tumor type, stage, and location, treatment type, genotyping and sequencing centers, and reason for sample collection.

5 Formulaires  
pht003890
Description

pht003890

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Description

SAMPLE_ID

Type de données

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Description

BODY_SITE

Type de données

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Description

ANALYTE_TYPE

Type de données

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Description

IS_TUMOR

Type de données

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Description

HISTOLOGICAL_TYPE

Type de données

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Primary tumor, metastasis, or transformed cell line
Description

PRIMARY_METASTATIC_TUMOR

Type de données

string

Alias
UMLS CUI [1,1]
C0677930
UMLS CUI [2,1]
C0027627
UMLS CUI [3,1]
C0007601
Primary tumor location
Description

PRIMARY_TUMOR_LOCATION

Type de données

string

Alias
UMLS CUI [1,1]
C0475447
Tumor stage of sample
Description

TUMOR_STAGE

Type de données

text

Alias
UMLS CUI [1,1]
C1300072
Name of the center which conducted genotyping
Description

GENOTYPING_CENTER

Type de données

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C1285573
Name of the center which conducted sequencing
Description

SEQUENCING_CENTER

Type de données

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C1561491
Reason for procedure
Description

REASON_FOR_COLLECTION

Type de données

string

Alias
UMLS CUI [1,1]
C0392360
UMLS CUI [1,2]
C0087111
De-identified Longitudinal Sample ID
Description

LONGITUDINAL_ID

Type de données

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C0205127
UMLS CUI [1,3]
C1299222
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Similar models

The sample attributes table includes longitudinal sample ID, body site where sample was collected, analyte type, tumor status, histological type, tumor type, stage, and location, treatment type, genotyping and sequencing centers, and reason for sample collection.

5 Formulaires
Name
Type
Description | Question | Decode (Coded Value)
Type de données
Alias
Item Group
pht003890
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (Y)
C0027651 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
PRIMARY_METASTATIC_TUMOR
Item
Primary tumor, metastasis, or transformed cell line
string
C0677930 (UMLS CUI [1,1])
C0027627 (UMLS CUI [2,1])
C0007601 (UMLS CUI [3,1])
PRIMARY_TUMOR_LOCATION
Item
Primary tumor location
string
C0475447 (UMLS CUI [1,1])
Item
Tumor stage of sample
text
C1300072 (UMLS CUI [1,1])
TUMOR_STAGE
Code List
Tumor stage of sample
CL Item
ISS Stage I (I)
CL Item
ISS Stage II (II)
CL Item
ISS Stage III (III)
GENOTYPING_CENTER
Item
Name of the center which conducted genotyping
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1285573 (UMLS CUI [1,3])
SEQUENCING_CENTER
Item
Name of the center which conducted sequencing
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
REASON_FOR_COLLECTION
Item
Reason for procedure
string
C0392360 (UMLS CUI [1,1])
C0087111 (UMLS CUI [1,2])
LONGITUDINAL_ID
Item
De-identified Longitudinal Sample ID
string
C4684638 (UMLS CUI [1,1])
C0205127 (UMLS CUI [1,2])
C1299222 (UMLS CUI [1,3])
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