English

Subject ID, case or control, age, gender, PCA, initial starting material for MBD-seq, total mass captured after MethyMiner enrichment, batch ID, whether sample was done in duplicate, whether sample was rerun because of low read count of participants with or without schizophrenia and involved in the "Whole Genome Profiling to Detect Schizophrenia Methylation Markers" project.

4 forms  
pht003344
Description

pht003344

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Description

SUBJECT_ID

Data type

string

Alias
UMLS CUI [1,1]
C2348585
Case control status of the subject
Description

primary_disease

Data type

text

Alias
UMLS CUI [1,1]
C3274646
Age (in years)
Description

ageatsampling

Data type

text

Alias
UMLS CUI [1,1]
C0001779
Gender status
Description

male

Data type

text

Alias
UMLS CUI [1,1]
C0079399
Component 1 from PCA
Description

PC1

Data type

text

Alias
UMLS CUI [1,1]
C1705248
UMLS CUI [1,2]
C0205447
UMLS CUI [1,3]
C0429865
Component 2 from PCA
Description

PC2

Data type

text

Alias
UMLS CUI [1,1]
C1705248
UMLS CUI [1,2]
C0205448
UMLS CUI [1,3]
C0429865
Component 3 from PCA
Description

PC3

Data type

text

Alias
UMLS CUI [1,1]
C1705248
UMLS CUI [1,2]
C0205449
UMLS CUI [1,3]
C0429865
Component 4 from PCA
Description

PC4

Data type

text

Alias
UMLS CUI [1,1]
C1705248
UMLS CUI [1,2]
C0205450
UMLS CUI [1,3]
C0429865
Component 5 from PCA
Description

PC5

Data type

text

Alias
UMLS CUI [1,1]
C1705248
UMLS CUI [1,2]
C0205451
UMLS CUI [1,3]
C0429865
Component 6 from PCA
Description

PC6

Data type

text

Alias
UMLS CUI [1,1]
C1705248
UMLS CUI [1,2]
C0205452
UMLS CUI [1,3]
C0429865
Component 7 from PCA
Description

PC7

Data type

text

Alias
UMLS CUI [1,1]
C1705248
UMLS CUI [1,2]
C0205453
UMLS CUI [1,3]
C0429865
Initial starting material for MBD-seq
Description

instartmat

Data type

text

Alias
UMLS CUI [1,1]
C0520510
UMLS CUI [1,2]
C1561491
Total mass captured after MethyMiner enrichment
Description

tmasscap

Data type

text

Alias
UMLS CUI [1,1]
C0439810
UMLS CUI [1,2]
C1306372
UMLS CUI [1,3]
C3846158
UMLS CUI [1,4]
C0746574
UMLS CUI [1,5]
C0012854
UMLS CUI [1,6]
C4724475
Batch id
Description

batch_id

Data type

text

Alias
UMLS CUI [1,1]
C1948031
UMLS CUI [1,2]
C2348585
Whether samples was done in duplicate
Description

duplicate

Data type

text

Alias
UMLS CUI [1,1]
C0884358
UMLS CUI [1,2]
C0205173
UMLS CUI [1,3]
C2347026
Whether sample was rerun because of low read count
Description

rerun

Data type

text

Alias
UMLS CUI [1,1]
C5670429
UMLS CUI [1,2]
C0205251
UMLS CUI [1,3]
C5236470
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Similar models

Subject ID, case or control, age, gender, PCA, initial starting material for MBD-seq, total mass captured after MethyMiner enrichment, batch ID, whether sample was done in duplicate, whether sample was rerun because of low read count of participants with or without schizophrenia and involved in the "Whole Genome Profiling to Detect Schizophrenia Methylation Markers" project.

4 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht003344
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
Item
Case control status of the subject
text
C3274646 (UMLS CUI [1,1])
primary_disease
Code List
Case control status of the subject
CL Item
Control (0)
C3274648 (UMLS CUI [1,1])
CL Item
Schizophrenia Case (1)
ageatsampling
Item
Age (in years)
text
C0001779 (UMLS CUI [1,1])
Item
Gender status
text
C0079399 (UMLS CUI [1,1])
male
Code List
Gender status
CL Item
Female (0)
C0086287 (UMLS CUI [1,1])
CL Item
Male (1)
C0086582 (UMLS CUI [1,1])
PC1
Item
Component 1 from PCA
text
C1705248 (UMLS CUI [1,1])
C0205447 (UMLS CUI [1,2])
C0429865 (UMLS CUI [1,3])
PC2
Item
Component 2 from PCA
text
C1705248 (UMLS CUI [1,1])
C0205448 (UMLS CUI [1,2])
C0429865 (UMLS CUI [1,3])
PC3
Item
Component 3 from PCA
text
C1705248 (UMLS CUI [1,1])
C0205449 (UMLS CUI [1,2])
C0429865 (UMLS CUI [1,3])
PC4
Item
Component 4 from PCA
text
C1705248 (UMLS CUI [1,1])
C0205450 (UMLS CUI [1,2])
C0429865 (UMLS CUI [1,3])
PC5
Item
Component 5 from PCA
text
C1705248 (UMLS CUI [1,1])
C0205451 (UMLS CUI [1,2])
C0429865 (UMLS CUI [1,3])
PC6
Item
Component 6 from PCA
text
C1705248 (UMLS CUI [1,1])
C0205452 (UMLS CUI [1,2])
C0429865 (UMLS CUI [1,3])
PC7
Item
Component 7 from PCA
text
C1705248 (UMLS CUI [1,1])
C0205453 (UMLS CUI [1,2])
C0429865 (UMLS CUI [1,3])
instartmat
Item
Initial starting material for MBD-seq
text
C0520510 (UMLS CUI [1,1])
C1561491 (UMLS CUI [1,2])
tmasscap
Item
Total mass captured after MethyMiner enrichment
text
C0439810 (UMLS CUI [1,1])
C1306372 (UMLS CUI [1,2])
C3846158 (UMLS CUI [1,3])
C0746574 (UMLS CUI [1,4])
C0012854 (UMLS CUI [1,5])
C4724475 (UMLS CUI [1,6])
Item
Batch id
text
C1948031 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
batch_id
Code List
Batch id
CL Item
Stage 1 (1)
CL Item
Stage 2 (2)
Item
Whether samples was done in duplicate
text
C0884358 (UMLS CUI [1,1])
C0205173 (UMLS CUI [1,2])
C2347026 (UMLS CUI [1,3])
duplicate
Code List
Whether samples was done in duplicate
CL Item
Not a duplicate, (0)
CL Item
Duplicate (1)
Item
Whether sample was rerun because of low read count
text
C5670429 (UMLS CUI [1,1])
C0205251 (UMLS CUI [1,2])
C5236470 (UMLS CUI [1,3])
rerun
Code List
Whether sample was rerun because of low read count
CL Item
Not a rerun, (0)
CL Item
Rerun (1)
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