English

Subject ID, age, sex, race, ethnicity, smoking status, smoking ICD9 code, CEU population, follow-up time of cancer participant visit, cancer status, cancer diagnosis, cancer site, CEU population, total population, smoking status, year of diagnosis, cancer type, cancer stage, breast cancer, colorectal cancer, lung cancer, melanoma, non-Hodgkin's lymphoma, ovarian cancer, prostate cancer, endometrial cancer, multiply cancer and follow-up time of cancer participant's visit of subjects with or without cancer and involved in the "Population Architecture Using Genomics and Epidemiology (PAGE): Epidemiologic Architecture for Genes Linked to Environment (EAGLE) - BioVU Cancer Project" project.

5 forms  
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. Subject ID and consent group of participants with or without cancer and involved in the "Population Architecture Using Genomics and Epidemiology (PAGE): Epidemiologic Architecture for Genes Linked to Environment (EAGLE) - BioVU Cancer Project" project.
    3. Subject ID, sample ID and sample use variable obtained from participants with or without cancer and involved in the "Population Architecture Using Genomics and Epidemiology (PAGE): Epidemiologic Architecture for Genes Linked to Environment (EAGLE) - BioVU Cancer Project" project.
    4. Subject ID, age, sex, race, ethnicity, smoking status, smoking ICD9 code, CEU population, follow-up time of cancer participant visit, cancer status, cancer diagnosis, cancer site, CEU population, total population, smoking status, year of diagnosis, cancer type, cancer stage, breast cancer, colorectal cancer, lung cancer, melanoma, non-Hodgkin's lymphoma, ovarian cancer, prostate cancer, endometrial cancer, multiply cancer and follow-up time of cancer participant's visit of subjects with or without cancer and involved in the "Population Architecture Using Genomics and Epidemiology (PAGE): Epidemiologic Architecture for Genes Linked to Environment (EAGLE) - BioVU Cancer Project" project.
    5. Sample ID, body site where sample was collected [blood], analyte type, tumor status, and histological type of sample obtained from participants with or without cancer and involved in the "Population Architecture Using Genomics and Epidemiology (PAGE): Epidemiologic Architecture for Genes Linked to Environment (EAGLE) - BioVU Cancer Project" project.
pht003616
Description

pht003616

Subject ID
Description

subjid

Data type

text

Alias
UMLS CUI [1,1]
C2348585
Age of participant
Description

age

Data type

text

Measurement units
  • Years
Alias
UMLS CUI [1,1]
C0001779
Years
Gender of participant
Description

sex

Data type

text

Alias
UMLS CUI [1,1]
C0079399
Race of Participant
Description

race

Data type

text

Alias
UMLS CUI [1,1]
C0034510
Ethnicity from Genetic Ancestry
Description

ethnicity_assignment

Data type

text

Alias
UMLS CUI [1,1]
C0015031
Smoking status: NLP Definition
Description

smoking

Data type

text

Alias
UMLS CUI [1,1]
C1519386
Smoking status: ICD9 Definition
Description

smokingcode

Data type

text

Alias
UMLS CUI [1,1]
C1519386
UMLS CUI [1,2]
C2346503
1st Principal components of total population
Description

pc1

Data type

text

Alias
UMLS CUI [1,1]
C3258257
UMLS CUI [1,2]
C0429865
UMLS CUI [1,3]
C0205435
2nd Principal components of total population
Description

pc2

Data type

text

Alias
UMLS CUI [1,1]
C3258257
UMLS CUI [1,2]
C0429865
UMLS CUI [1,3]
C0205436
3rd Principal components of total population
Description

pc3

Data type

text

Alias
UMLS CUI [1,1]
C3258257
UMLS CUI [1,2]
C0429865
1st Principal components of CEU population
Description

CEU_PC1

Data type

text

Alias
UMLS CUI [1,1]
C0429865
UMLS CUI [1,2]
C1257890
UMLS CUI [1,3]
C0205435
2nd Principal components of CEU population
Description

CEU_PC2

Data type

text

Alias
UMLS CUI [1,1]
C0429865
UMLS CUI [1,2]
C1257890
UMLS CUI [1,3]
C0205436
3rd Principal components of CEU population
Description

CEU_PC3

Data type

text

Alias
UMLS CUI [1,1]
C0429865
UMLS CUI [1,2]
C1257890
UMLS CUI [1,3]
C0205437
4th Principal components of CEU population
Description

CEU_PC4

Data type

text

Alias
UMLS CUI [1,1]
C0429865
UMLS CUI [1,2]
C1257890
UMLS CUI [1,3]
C0205438
5th Principal components of CEU population
Description

CEU_PC5

Data type

text

Alias
UMLS CUI [1,1]
C0429865
UMLS CUI [1,2]
C1257890
UMLS CUI [1,3]
C0205439
Follow-up time of cancer participant's visit
Description

followup_time

Data type

text

Alias
UMLS CUI [1,1]
C1522577
UMLS CUI [1,2]
C0040223
Cancer: Yes or No
Description

cancer_prevalent_status

Data type

text

Alias
UMLS CUI [1,1]
C0006826
UMLS CUI [1,2]
C0150312
Type of Cancer
Description

Cancer_Sites

Data type

text

Alias
UMLS CUI [1,1]
C4743729
Year Cancer was diagnosed
Description

Cancer_Diagnosis_Year

Data type

text

Measurement units
  • Years
Alias
UMLS CUI [1,1]
C4763616
UMLS CUI [1,2]
C0006826
Years
Cancer Stages: Local/Regional/Other
Description

cancer_stages

Data type

text

Alias
UMLS CUI [1,1]
C4716421
NHL: Whites
Description

NHL_CEU

Data type

text

Alias
UMLS CUI [1,1]
C0024305
UMLS CUI [1,2]
C0043157
NHL_SLL: Whites
Description

NHL_CEU_SLL

Data type

text

Alias
UMLS CUI [1,1]
C0024305
UMLS CUI [1,2]
C0855095
UMLS CUI [1,3]
C0043157
NHLFolicular: Whites
Description

NHLFolicular_CEU

Data type

text

Alias
UMLS CUI [1,1]
C0024301
UMLS CUI [1,2]
C0043157
NHLFolicular: All races
Description

NHLFolicular_racecombined

Data type

text

Alias
UMLS CUI [1,1]
C0024301
NHLFolicular: All races
Description

NHLFolicular_racecombinedSelf

Data type

text

Alias
UMLS CUI [1,1]
C0024301
NHL: All races
Description

NHL_racecombined

Data type

text

Alias
UMLS CUI [1,1]
C0024305
NHL_SLL: All races
Description

NHL_racecombined_SLL

Data type

text

Alias
UMLS CUI [1,1]
C0855095
UMLS CUI [1,2]
C0024305
Breast: Whites
Description

breast_CEU

Data type

text

Alias
UMLS CUI [1,1]
C0678222
UMLS CUI [1,2]
C0043157
Breast: Blacks
Description

breast_YRI

Data type

text

Alias
UMLS CUI [1,1]
C0678222
UMLS CUI [1,2]
C0085756
BreastNoInsitu: Whites
Description

breastNoInsitu_CEU

Data type

text

Alias
UMLS CUI [1,1]
C0043157
UMLS CUI [1,2]
C0853879
BreastNoInsitu: Blacks
Description

breastNoInsitu_YRI

Data type

text

Alias
UMLS CUI [1,1]
C0085756
UMLS CUI [1,2]
C0853879
Colorectal: Whites
Description

colorectal_CEU

Data type

text

Alias
UMLS CUI [1,1]
C0043157
UMLS CUI [1,2]
C0009402
Colorectal: Whites
Description

colorectal_W

Data type

text

Alias
UMLS CUI [1,1]
C0043157
UMLS CUI [1,2]
C0009402
Colorectal: All races
Description

colorectal_racecombined

Data type

text

Alias
UMLS CUI [1,1]
C0009402
Colorectal: All races
Description

colorectal_racecombinedSelf

Data type

text

Alias
UMLS CUI [1,1]
C0009402
Lung: Whites
Description

lung_CEU

Data type

text

Alias
UMLS CUI [1,1]
C0242379
UMLS CUI [1,2]
C0043157
LungCode: All races
Description

lungCode_racecombined

Data type

text

Alias
UMLS CUI [1,1]
C0242379
LungSmoking: Whites
Description

lungSmoking_CEU

Data type

text

Alias
UMLS CUI [1,1]
C0043157
UMLS CUI [1,2]
C0242379
UMLS CUI [1,3]
C1519384
LungSmokingCode: Whites
Description

lungSmokingCode_CEU

Data type

text

Alias
UMLS CUI [1,1]
C0043157
UMLS CUI [1,2]
C0242379
UMLS CUI [1,3]
C1519384
Lung: All races
Description

lung_racecombined

Data type

text

Alias
UMLS CUI [1,1]
C0242379
Adeno: All races
Description

lung_racecombined_adeno

Data type

text

Alias
UMLS CUI [1,1]
C0001418
Large_cell: All races
Description

lung_racecombined_largecell

Data type

text

Alias
UMLS CUI [1,1]
C0345958
Amall_cell: All races
Description

lung_racecombined_smallcell

Data type

text

Alias
UMLS CUI [1,1]
C0262584
Squamous: All races
Description

lung_racecombined_squamous

Data type

text

Alias
UMLS CUI [1,1]
C0334247
Melanoma: Whites
Description

melanoma_CEU

Data type

text

Alias
UMLS CUI [1,1]
C0043157
UMLS CUI [1,2]
C0025202
MelanomaNoInsitu: Whites
Description

melanomaNoInsitu_CEU

Data type

text

Alias
UMLS CUI [1,1]
C0043157
UMLS CUI [1,2]
C0006826
UMLS CUI [1,3]
C0205281
Multiple: All races
Description

multiple_primaries

Data type

text

Alias
UMLS CUI [1,1]
C0026764
Ovarian: Whites
Description

ovarian_CEU

Data type

text

Alias
UMLS CUI [1,1]
C0043157
UMLS CUI [1,2]
C0029925
OvarianSerous: Whites
Description

ovarianSerous_CEU

Data type

text

Alias
UMLS CUI [1,1]
C0043157
UMLS CUI [1,2]
C1335177
Prostate: Whites
Description

prostate_CEU

Data type

text

Alias
UMLS CUI [1,1]
C0043157
UMLS CUI [1,2]
C0033578
Prostate: Blacks
Description

prostate_YRI

Data type

text

Alias
UMLS CUI [1,1]
C0085756
UMLS CUI [1,2]
C0033578
Prostate_AGGRESSIVE: Whites
Description

prostate_CEU_aggressive

Data type

text

Alias
UMLS CUI [1,1]
C0043157
UMLS CUI [1,2]
C0033578
UMLS CUI [1,3]
C0580822
Prostate_GRADE: Whites
Description

prostate_CEU_grade

Data type

text

Alias
UMLS CUI [1,1]
C0043157
UMLS CUI [1,2]
C0033578
UMLS CUI [1,3]
C0919553
Prostate_STAGE: Whites
Description

prostate_CEU_stage

Data type

text

Alias
UMLS CUI [1,1]
C0043157
UMLS CUI [1,2]
C0033578
UMLS CUI [1,3]
C1300072
Prostate_AGGRESSIVE: Blacks
Description

prostate_YRI_aggressive

Data type

text

Alias
UMLS CUI [1,1]
C0085756
UMLS CUI [1,2]
C0033578
UMLS CUI [1,3]
C0580822
Prostate_GRADE: Blacks
Description

prostate_YRI_grade

Data type

text

Alias
UMLS CUI [1,1]
C0085756
UMLS CUI [1,2]
C0033578
UMLS CUI [1,3]
C0919553
Prostate_STAGE: Blacks
Description

prostate_YRI_stage

Data type

text

Alias
UMLS CUI [1,1]
C0085756
UMLS CUI [1,2]
C0033578
UMLS CUI [1,3]
C1300072
Endometrial: All races
Description

endometrial

Data type

text

Alias
UMLS CUI [1,1]
C0476089
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Similar models

Subject ID, age, sex, race, ethnicity, smoking status, smoking ICD9 code, CEU population, follow-up time of cancer participant visit, cancer status, cancer diagnosis, cancer site, CEU population, total population, smoking status, year of diagnosis, cancer type, cancer stage, breast cancer, colorectal cancer, lung cancer, melanoma, non-Hodgkin's lymphoma, ovarian cancer, prostate cancer, endometrial cancer, multiply cancer and follow-up time of cancer participant's visit of subjects with or without cancer and involved in the "Population Architecture Using Genomics and Epidemiology (PAGE): Epidemiologic Architecture for Genes Linked to Environment (EAGLE) - BioVU Cancer Project" project.

5 forms
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. Subject ID and consent group of participants with or without cancer and involved in the "Population Architecture Using Genomics and Epidemiology (PAGE): Epidemiologic Architecture for Genes Linked to Environment (EAGLE) - BioVU Cancer Project" project.
    3. Subject ID, sample ID and sample use variable obtained from participants with or without cancer and involved in the "Population Architecture Using Genomics and Epidemiology (PAGE): Epidemiologic Architecture for Genes Linked to Environment (EAGLE) - BioVU Cancer Project" project.
    4. Subject ID, age, sex, race, ethnicity, smoking status, smoking ICD9 code, CEU population, follow-up time of cancer participant visit, cancer status, cancer diagnosis, cancer site, CEU population, total population, smoking status, year of diagnosis, cancer type, cancer stage, breast cancer, colorectal cancer, lung cancer, melanoma, non-Hodgkin's lymphoma, ovarian cancer, prostate cancer, endometrial cancer, multiply cancer and follow-up time of cancer participant's visit of subjects with or without cancer and involved in the "Population Architecture Using Genomics and Epidemiology (PAGE): Epidemiologic Architecture for Genes Linked to Environment (EAGLE) - BioVU Cancer Project" project.
    5. Sample ID, body site where sample was collected [blood], analyte type, tumor status, and histological type of sample obtained from participants with or without cancer and involved in the "Population Architecture Using Genomics and Epidemiology (PAGE): Epidemiologic Architecture for Genes Linked to Environment (EAGLE) - BioVU Cancer Project" project.
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht003616
subjid
Item
Subject ID
text
C2348585 (UMLS CUI [1,1])
age
Item
Age of participant
text
C0001779 (UMLS CUI [1,1])
sex
Item
Gender of participant
text
C0079399 (UMLS CUI [1,1])
race
Item
Race of Participant
text
C0034510 (UMLS CUI [1,1])
Item
Ethnicity from Genetic Ancestry
text
C0015031 (UMLS CUI [1,1])
ethnicity_assignment
Code List
Ethnicity from Genetic Ancestry
CL Item
CEU (1)
CL Item
YRI (2)
CL Item
MEX (3)
CL Item
CHB (4)
CL Item
IND (5)
CL Item
NAM (6)
CL Item
Missing (999)
smoking
Item
Smoking status: NLP Definition
text
C1519386 (UMLS CUI [1,1])
smokingcode
Item
Smoking status: ICD9 Definition
text
C1519386 (UMLS CUI [1,1])
C2346503 (UMLS CUI [1,2])
pc1
Item
1st Principal components of total population
text
C3258257 (UMLS CUI [1,1])
C0429865 (UMLS CUI [1,2])
C0205435 (UMLS CUI [1,3])
pc2
Item
2nd Principal components of total population
text
C3258257 (UMLS CUI [1,1])
C0429865 (UMLS CUI [1,2])
C0205436 (UMLS CUI [1,3])
pc3
Item
3rd Principal components of total population
text
C3258257 (UMLS CUI [1,1])
C0429865 (UMLS CUI [1,2])
CEU_PC1
Item
1st Principal components of CEU population
text
C0429865 (UMLS CUI [1,1])
C1257890 (UMLS CUI [1,2])
C0205435 (UMLS CUI [1,3])
CEU_PC2
Item
2nd Principal components of CEU population
text
C0429865 (UMLS CUI [1,1])
C1257890 (UMLS CUI [1,2])
C0205436 (UMLS CUI [1,3])
CEU_PC3
Item
3rd Principal components of CEU population
text
C0429865 (UMLS CUI [1,1])
C1257890 (UMLS CUI [1,2])
C0205437 (UMLS CUI [1,3])
CEU_PC4
Item
4th Principal components of CEU population
text
C0429865 (UMLS CUI [1,1])
C1257890 (UMLS CUI [1,2])
C0205438 (UMLS CUI [1,3])
CEU_PC5
Item
5th Principal components of CEU population
text
C0429865 (UMLS CUI [1,1])
C1257890 (UMLS CUI [1,2])
C0205439 (UMLS CUI [1,3])
followup_time
Item
Follow-up time of cancer participant's visit
text
C1522577 (UMLS CUI [1,1])
C0040223 (UMLS CUI [1,2])
cancer_prevalent_status
Item
Cancer: Yes or No
text
C0006826 (UMLS CUI [1,1])
C0150312 (UMLS CUI [1,2])
Cancer_Sites
Item
Type of Cancer
text
C4743729 (UMLS CUI [1,1])
Cancer_Diagnosis_Year
Item
Year Cancer was diagnosed
text
C4763616 (UMLS CUI [1,1])
C0006826 (UMLS CUI [1,2])
cancer_stages
Item
Cancer Stages: Local/Regional/Other
text
C4716421 (UMLS CUI [1,1])
NHL_CEU
Item
NHL: Whites
text
C0024305 (UMLS CUI [1,1])
C0043157 (UMLS CUI [1,2])
NHL_CEU_SLL
Item
NHL_SLL: Whites
text
C0024305 (UMLS CUI [1,1])
C0855095 (UMLS CUI [1,2])
C0043157 (UMLS CUI [1,3])
NHLFolicular_CEU
Item
NHLFolicular: Whites
text
C0024301 (UMLS CUI [1,1])
C0043157 (UMLS CUI [1,2])
NHLFolicular_racecombined
Item
NHLFolicular: All races
text
C0024301 (UMLS CUI [1,1])
NHLFolicular_racecombinedSelf
Item
NHLFolicular: All races
text
C0024301 (UMLS CUI [1,1])
NHL_racecombined
Item
NHL: All races
text
C0024305 (UMLS CUI [1,1])
NHL_racecombined_SLL
Item
NHL_SLL: All races
text
C0855095 (UMLS CUI [1,1])
C0024305 (UMLS CUI [1,2])
breast_CEU
Item
Breast: Whites
text
C0678222 (UMLS CUI [1,1])
C0043157 (UMLS CUI [1,2])
breast_YRI
Item
Breast: Blacks
text
C0678222 (UMLS CUI [1,1])
C0085756 (UMLS CUI [1,2])
breastNoInsitu_CEU
Item
BreastNoInsitu: Whites
text
C0043157 (UMLS CUI [1,1])
C0853879 (UMLS CUI [1,2])
breastNoInsitu_YRI
Item
BreastNoInsitu: Blacks
text
C0085756 (UMLS CUI [1,1])
C0853879 (UMLS CUI [1,2])
colorectal_CEU
Item
Colorectal: Whites
text
C0043157 (UMLS CUI [1,1])
C0009402 (UMLS CUI [1,2])
colorectal_W
Item
Colorectal: Whites
text
C0043157 (UMLS CUI [1,1])
C0009402 (UMLS CUI [1,2])
colorectal_racecombined
Item
Colorectal: All races
text
C0009402 (UMLS CUI [1,1])
colorectal_racecombinedSelf
Item
Colorectal: All races
text
C0009402 (UMLS CUI [1,1])
lung_CEU
Item
Lung: Whites
text
C0242379 (UMLS CUI [1,1])
C0043157 (UMLS CUI [1,2])
lungCode_racecombined
Item
LungCode: All races
text
C0242379 (UMLS CUI [1,1])
lungSmoking_CEU
Item
LungSmoking: Whites
text
C0043157 (UMLS CUI [1,1])
C0242379 (UMLS CUI [1,2])
C1519384 (UMLS CUI [1,3])
lungSmokingCode_CEU
Item
LungSmokingCode: Whites
text
C0043157 (UMLS CUI [1,1])
C0242379 (UMLS CUI [1,2])
C1519384 (UMLS CUI [1,3])
lung_racecombined
Item
Lung: All races
text
C0242379 (UMLS CUI [1,1])
lung_racecombined_adeno
Item
Adeno: All races
text
C0001418 (UMLS CUI [1,1])
lung_racecombined_largecell
Item
Large_cell: All races
text
C0345958 (UMLS CUI [1,1])
lung_racecombined_smallcell
Item
Amall_cell: All races
text
C0262584 (UMLS CUI [1,1])
lung_racecombined_squamous
Item
Squamous: All races
text
C0334247 (UMLS CUI [1,1])
melanoma_CEU
Item
Melanoma: Whites
text
C0043157 (UMLS CUI [1,1])
C0025202 (UMLS CUI [1,2])
melanomaNoInsitu_CEU
Item
MelanomaNoInsitu: Whites
text
C0043157 (UMLS CUI [1,1])
C0006826 (UMLS CUI [1,2])
C0205281 (UMLS CUI [1,3])
multiple_primaries
Item
Multiple: All races
text
C0026764 (UMLS CUI [1,1])
ovarian_CEU
Item
Ovarian: Whites
text
C0043157 (UMLS CUI [1,1])
C0029925 (UMLS CUI [1,2])
ovarianSerous_CEU
Item
OvarianSerous: Whites
text
C0043157 (UMLS CUI [1,1])
C1335177 (UMLS CUI [1,2])
prostate_CEU
Item
Prostate: Whites
text
C0043157 (UMLS CUI [1,1])
C0033578 (UMLS CUI [1,2])
prostate_YRI
Item
Prostate: Blacks
text
C0085756 (UMLS CUI [1,1])
C0033578 (UMLS CUI [1,2])
prostate_CEU_aggressive
Item
Prostate_AGGRESSIVE: Whites
text
C0043157 (UMLS CUI [1,1])
C0033578 (UMLS CUI [1,2])
C0580822 (UMLS CUI [1,3])
prostate_CEU_grade
Item
Prostate_GRADE: Whites
text
C0043157 (UMLS CUI [1,1])
C0033578 (UMLS CUI [1,2])
C0919553 (UMLS CUI [1,3])
prostate_CEU_stage
Item
Prostate_STAGE: Whites
text
C0043157 (UMLS CUI [1,1])
C0033578 (UMLS CUI [1,2])
C1300072 (UMLS CUI [1,3])
prostate_YRI_aggressive
Item
Prostate_AGGRESSIVE: Blacks
text
C0085756 (UMLS CUI [1,1])
C0033578 (UMLS CUI [1,2])
C0580822 (UMLS CUI [1,3])
prostate_YRI_grade
Item
Prostate_GRADE: Blacks
text
C0085756 (UMLS CUI [1,1])
C0033578 (UMLS CUI [1,2])
C0919553 (UMLS CUI [1,3])
prostate_YRI_stage
Item
Prostate_STAGE: Blacks
text
C0085756 (UMLS CUI [1,1])
C0033578 (UMLS CUI [1,2])
C1300072 (UMLS CUI [1,3])
endometrial
Item
Endometrial: All races
text
C0476089 (UMLS CUI [1,1])
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