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The sample attributes data table includes sample type, body site where sample was extracted, sample analyte type and histological type. Tumor samples have further information relating to the stage, grade, location, and if tumor sample was primary or metastatic.

5 Formulieren  
pht002700
Beschrijving

pht002700

De-identified Sample ID
Beschrijving

SAMPID

Datatype

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Beschrijving

BODY_SITE

Datatype

string

Alias
UMLS CUI [1,1]
C1515974
UMLS CUI [1,2]
C0200345
Analyte Type
Beschrijving

ANALYTE_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Beschrijving

IS_TUMOR

Datatype

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Beschrijving

HISTOLOGICAL_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C0449475
UMLS CUI [1,2]
C2713035
UMLS CUI [1,3]
C0449560
Primary tumor, metastasis, or transformed cell line
Beschrijving

PRIMARY_METASTATIC_TUMOR

Datatype

string

Alias
UMLS CUI [1,1]
C0677930
UMLS CUI [1,2]
C0027627
UMLS CUI [1,3]
C0007601
Primary tumor location
Beschrijving

PRIMARY_TUMOR_LOCATION

Datatype

string

Alias
UMLS CUI [1,1]
C0677930
Tumor stage of sample
Beschrijving

TUMOR_STAGE

Datatype

string

Alias
UMLS CUI [1,1]
C1300072
UMLS CUI [1,2]
C2347026
Tumor grade of sample
Beschrijving

TUMOR_GRADE

Datatype

string

Alias
UMLS CUI [1,1]
C0919553
UMLS CUI [1,2]
C2347026
Type of tumor treatment for sample
Beschrijving

TUMOR_TREATMENT

Datatype

string

Alias
UMLS CUI [1,1]
C0332307
UMLS CUI [1,2]
C0003392
UMLS CUI [1,3]
C2347026
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Similar models

The sample attributes data table includes sample type, body site where sample was extracted, sample analyte type and histological type. Tumor samples have further information relating to the stage, grade, location, and if tumor sample was primary or metastatic.

5 Formulieren
Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht002700
SAMPID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C1515974 (UMLS CUI [1,1])
C0200345 (UMLS CUI [1,2])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (N)
CL Item
Is Tumor (Y)
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C0449475 (UMLS CUI [1,1])
C2713035 (UMLS CUI [1,2])
C0449560 (UMLS CUI [1,3])
PRIMARY_METASTATIC_TUMOR
Item
Primary tumor, metastasis, or transformed cell line
string
C0677930 (UMLS CUI [1,1])
C0027627 (UMLS CUI [1,2])
C0007601 (UMLS CUI [1,3])
PRIMARY_TUMOR_LOCATION
Item
Primary tumor location
string
C0677930 (UMLS CUI [1,1])
TUMOR_STAGE
Item
Tumor stage of sample
string
C1300072 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
TUMOR_GRADE
Item
Tumor grade of sample
string
C0919553 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
TUMOR_TREATMENT
Item
Type of tumor treatment for sample
string
C0332307 (UMLS CUI [1,1])
C0003392 (UMLS CUI [1,2])
C2347026 (UMLS CUI [1,3])
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